IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1878	 67.52	0	2049173..2049874	+	233	121594314	-	Ajs_1954	-	PAP2 (acid phosphatase) superfamily protein-like protein
1879	 68.19	0	2049921..2051690	+	589	121594315	-	Ajs_1955	-	sulfatase
1880	 64.95	0	2051754..2052335	-	193	121594316	-	Ajs_1956	-	uncharacterized peroxidase-related enzyme
1881	 71.64	+1	2052352..2053035	-	227	121594317	-	Ajs_1957	-	DTW domain-containing protein
1882	 66.53	0	2053142..2054593	-	483	121594318	-	Ajs_1958	-	catalase
1883	 70.57	0	2054769..2056049	+	426	121594319	-	Ajs_1959	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1884	 66.30	0	2056169..2056714	-	181	121594320	-	Ajs_1960	-	LuxR family transcriptional regulator
1885	 65.54	0	2056797..2057504	+	235	121594321	-	Ajs_1961	-	3-oxoacid CoA-transferase, A subunit
1886	 64.16	0	2057508..2058146	+	212	121594322	-	Ajs_1962	-	butyryl-CoA:acetate CoA transferase
1887	 67.28	0	2058298..2059611	+	437	121594323	-	Ajs_1963	-	metal dependent phosphohydrolase
1888	 61.48	-1	2059746..2060747	+	333	121594324	-	Ajs_1964	-	hypothetical protein
1889	 74.09	+1	2060823..2061590	+	255	121594325	-	Ajs_1965	-	hypothetical protein
1890	 75.74	+1	2061556..2062965	+	469	121594326	-	Ajs_1966	-	hypothetical protein
1891	 71.17	0	2062962..2066156	+	1064	121594327	-	Ajs_1967	-	DNA polymerase III, alpha subunit
1892	 75.60	+1	2066220..2067473	-	417	121594328	-	Ajs_1968	-	Sel1 domain-containing protein
1893	 67.30	0	2067509..2069254	-	581	121594329	-	Ajs_1969	-	hypothetical protein
1894	 67.86	0	2069349..2069768	-	139	121594330	-	Ajs_1970	-	hypothetical protein
1895	 61.76	0	2069835..2070425	-	196	121594331	-	Ajs_1971	-	hypothetical protein
1896	 63.43	0	2073679..2075007	-	442	121594332	-	Ajs_1976	-	transposase IS116/IS110/IS902 family protein
1897	 64.35	0	2075379..2077232	-	617	121594333	-	Ajs_1977	-	phage integrase family protein
1898	 66.60	0	2077713..2079203	-	496	121594334	-	Ajs_1978	-	succinate semialdehyde dehydrogenase
1899	 66.48	0	2079348..2081972	+	874	121594335	-	Ajs_1979	-	alanyl-tRNA synthetase
1900	 64.68	0	2082120..2083124	-	334	121594336	-	Ajs_1980	-	diguanylate cyclase
1901	 68.65	0	2083145..2083900	-	251	121594337	-	Ajs_1981	-	tRNA (guanine-N(7)-)-methyltransferase
1902	 68.11	0	2083897..2084868	-	323	121594338	-	Ajs_1982	-	glutamate--tRNA ligase
1903	 71.83	+1	2084865..2085968	-	367	121594339	-	Ajs_1983	-	FAD dependent oxidoreductase
1904	 69.76	0	2086065..2087003	-	312	121594340	-	Ajs_1984	-	LysR family transcriptional regulator
1905	 65.53	0	2087121..2087822	+	233	121594341	-	Ajs_1985	-	pirin domain-containing protein
1906	 65.22	0	2087859..2088272	+	137	121594342	-	Ajs_1986	-	DoxX family protein
1907	 65.05	0	2088344..2089084	-	246	121594343	-	Ajs_1987	-	arginyl-tRNA-protein transferase
1908	 67.06	0	2089081..2089845	-	254	121594344	aat	Ajs_1988	-	leucyl/phenylalanyl-tRNA--protein transferase
1909	 68.29	0	2089884..2090315	-	143	121594345	-	Ajs_1989	-	glyoxalase/bleomycin resistance protein/dioxygenase
1910	 68.01	0	2090402..2091739	-	445	121594346	-	Ajs_1990	-	glucarate dehydratase
1911	 71.63	+1	2091783..2092769	-	328	121594347	-	Ajs_1991	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1912	 65.83	0	2092837..2093790	-	317	121594348	-	Ajs_1992	-	hypothetical protein
1913	 63.82	0	2093860..2094771	-	303	121594349	-	Ajs_1993	-	5-dehydro-4-deoxyglucarate dehydratase
1914	 66.25	0	2094864..2095832	-	322	121594350	-	Ajs_1994	-	hypothetical protein
1915	 65.68	0	2095943..2096749	-	268	121594351	-	Ajs_1995	-	GntR family transcriptional regulator
1916	 67.13	0	2096846..2098153	+	435	121594352	-	Ajs_1996	-	mandelate racemase/muconate lactonizing protein
1917	 67.36	0	2098185..2099189	+	334	121594353	-	Ajs_1997	-	hypothetical protein
1918	 67.69	0	2099332..2100894	+	520	121594354	-	Ajs_1998	-	galactarate dehydratase
1919	 66.76	0	2100944..2102002	+	352	121594355	-	Ajs_1999	-	gluconolactonase
1920	 66.96	0	2102288..2102626	-	112	121594356	-	Ajs_2000	-	hypothetical protein
1921	 67.26	0	2102694..2103875	-	393	121594357	-	Ajs_2001	-	tryptophan synthase subunit beta
1922	 67.96	0	2104126..2104512	+	128	121594358	-	Ajs_2002	-	hypothetical protein
1923	 41.83	-2	2104939..2106291	-	450	121594359	-	Ajs_2003	-	hypothetical protein
1924	 57.70	-1	2106468..2107448	-	326	121594360	-	Ajs_2004	-	transposase, IS4 family protein
1925	 66.44	0	2108119..2109006	-	295	121594361	-	Ajs_2005	-	3-hydroxyisobutyrate dehydrogenase
1926	 71.60	+1	2109099..2109503	-	134	121594362	-	Ajs_2006	-	hypothetical protein
1927	 68.04	0	2109573..2110739	-	388	121594363	-	Ajs_2007	-	acyl-CoA dehydrogenase domain-containing protein
1928	 72.03	+1	2110767..2111195	-	142	121594364	-	Ajs_2008	-	hypothetical protein
1929	 66.80	0	2111234..2112757	-	507	121594365	-	Ajs_2009	-	methylmalonate-semialdehyde dehydrogenase [acylating]
1930	 68.86	0	2112914..2113825	+	303	121594366	-	Ajs_2010	-	LysR family transcriptional regulator
1931	 61.83	0	2113895..2114287	-	130	121594367	-	Ajs_2011	-	hypothetical protein
1932	 67.51	0	2114302..2114775	+	157	121594368	-	Ajs_2012	-	CBS domain-containing protein
1933	 62.26	0	2114832..2114990	-	52	121594369	-	Ajs_2013	-	hypothetical protein
1934	 69.44	0	2115344..2116534	+	396	121594370	-	Ajs_2014	-	glucose sorbosone dehydrogenase
1935	 68.13	0	2116689..2117303	+	204	121594371	-	Ajs_2015	-	isochorismatase hydrolase
1936	 68.62	0	2117524..2119419	+	631	121594372	-	Ajs_2016	-	propionyl-CoA synthetase
1937	 70.62	0	2119508..2123407	-	1299	121594373	-	Ajs_2017	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1938	 72.10	+1	2123626..2124564	-	312	121594374	-	Ajs_2018	-	hypothetical protein
1939	 72.50	+1	2124561..2125109	-	182	121594375	-	Ajs_2019	-	methylated-DNA--protein-cysteine methyltransferase
1940	 72.46	+1	2125170..2126723	-	517	121594376	-	Ajs_2020	-	DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada
1941	 68.39	0	2126920..2128308	+	462	121594377	-	Ajs_2021	-	phosphomannomutase
1942	 72.32	+1	2128329..2129690	+	453	121594378	-	Ajs_2022	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
1943	 69.31	0	2129795..2132521	+	908	121594379	-	Ajs_2023	-	GCN5-related N-acetyltransferase
1944	 66.67	0	2132528..2132881	+	117	121594380	-	Ajs_2024	-	hypothetical protein
1945	 68.38	0	2132926..2133507	+	193	121594381	-	Ajs_2025	-	deaminase-reductase domain-containing protein
1946	 71.26	+1	2133591..2134808	-	405	121594382	-	Ajs_2026	-	TolC family type I secretion outer membrane protein
1947	 70.80	0	2134994..2135332	-	112	121594383	-	Ajs_2027	-	rhodanese domain-containing protein
1948	 68.92	0	2135364..2136074	-	236	121594384	-	Ajs_2028	-	methyltransferase type 11
1949	 65.61	0	2136122..2136784	-	220	121594385	-	Ajs_2029	-	TetR family transcriptional regulator
1950	 66.12	0	2136915..2137460	+	181	121594386	-	Ajs_2030	-	peptide methionine sulfoxide reductase
1951	 66.67	0	2137613..2137852	+	79	121594387	-	Ajs_2031	-	hypothetical protein
1952	 75.80	+1	2137878..2138282	+	134	121594388	-	Ajs_2032	-	hypothetical protein
1953	 71.22	+1	2138459..2140546	+	695	121594389	-	Ajs_2033	-	TonB-dependent receptor
1954	 72.05	+1	2140960..2141832	+	290	121594390	-	Ajs_2034	-	hypothetical protein
1955	 74.35	+1	2141969..2143192	+	407	121594391	-	Ajs_2035	-	chromate transporter
1956	 71.52	+1	2143257..2143709	-	150	121594392	-	Ajs_2036	-	AsnC family transcriptional regulator
1957	 70.09	0	2143847..2145016	+	389	121594393	-	Ajs_2037	-	saccharopine dehydrogenase
1958	 69.51	0	2145017..2146846	-	609	121594394	-	Ajs_2038	-	AMP-dependent synthetase and ligase
1959	 66.98	0	2147015..2147650	-	211	121594395	-	Ajs_2039	-	GntR family transcriptional regulator
1960	 64.68	0	2147775..2149937	+	720	121594396	-	Ajs_2040	-	methylmalonyl-CoA mutase
1961	 68.12	0	2149997..2150962	+	321	121594397	-	Ajs_2041	-	arginine/ornithine transport system ATPase
1962	 63.80	0	2150988..2152520	+	510	121594398	-	Ajs_2042	-	carboxyl transferase
1963	 64.96	0	2152542..2154590	+	682	121594399	-	Ajs_2043	-	carbamoyl-phosphate synthase L chain, ATP-binding
1964	 63.42	0	2154650..2155111	+	153	121594400	-	Ajs_2044	-	lactoylglutathione lyase
1965	 63.25	0	2155477..2156529	+	350	121594401	-	Ajs_2045	-	biotin synthase
1966	 64.14	0	2156795..2157586	+	263	121594402	-	Ajs_2046	-	short-chain dehydrogenase/reductase SDR
1967	 62.59	0	2157649..2158065	+	138	121594403	-	Ajs_2047	-	lactoylglutathione lyase
1968	 70.22	0	2158135..2158782	-	215	121594404	-	Ajs_2048	-	2-keto-3-deoxy-phosphogluconate aldolase
1969	 69.58	0	2158773..2160590	-	605	121594405	-	Ajs_2049	-	phosphogluconate dehydratase
1970	 64.19	0	2160751..2161761	-	336	121594406	-	Ajs_2050	-	TRAP dicarboxylate transporter, DctP subunit
1971	 66.20	0	2161806..2163086	-	426	121594407	-	Ajs_2051	-	TRAP dicarboxylate transporter, DctM subunit
1972	 67.43	0	2163095..2163616	-	173	121594408	-	Ajs_2052	-	tripartite ATP-independent periplasmic transporter DctQ
1973	 67.94	0	2163613..2164161	-	182	121594409	-	Ajs_2053	-	carbohydrate kinase
1974	 71.25	+1	2164377..2165402	+	341	121594410	-	Ajs_2054	-	LacI family transcription regulator
1975	 69.63	0	2165586..2166125	-	179	121594411	-	Ajs_2055	-	OmpA/MotB domain-containing protein
1976	 70.20	0	2166188..2166781	+	197	121594412	-	Ajs_2056	-	ChaC family protein
1977	 71.59	+1	2166815..2167342	+	175	121594413	-	Ajs_2057	-	superoxide dismutase, copper/zinc binding
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.