IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1797	 63.27	0	1955963..1957051	-	362	121594233	-	Ajs_1871	-	transposase, IS4 family protein
1798	 66.67	0	1957134..1957610	-	158	121594234	-	Ajs_1872	-	hypothetical protein
1799	 63.84	0	1957630..1958301	-	223	121594235	-	Ajs_1873	-	PAP2 (acid phosphatase) superfamily protein-like protein
1800	 61.39	-1	1958491..1959570	+	359	121594236	-	Ajs_1874	-	integrase catalytic subunit
1801	 59.88	-1	1959656..1960156	+	166	121594237	-	Ajs_1875	-	hypothetical protein
1802	 61.21	-1	1960193..1961035	+	280	121594238	-	Ajs_1876	-	hypothetical protein
1803	 60.57	-1	1961442..1962671	+	409	121594239	-	Ajs_1877	-	transposase Tn3
1804	 65.34	0	1962744..1965386	-	880	121594240	-	Ajs_1878	-	heavy metal translocating P-type ATPase
1805	 63.87	0	1965565..1966851	+	428	121594241	-	Ajs_1879	-	sodium/calcium exchanger membrane region
1806	 60.49	-1	1967219..1967623	-	134	121594242	-	Ajs_1880	-	hypothetical protein
1807	 69.02	0	1968234..1969934	+	566	121594243	-	Ajs_1882	-	phage integrase family protein
1808	 63.64	0	1969947..1970276	-	109	121594244	-	Ajs_1883	-	XRE family transcriptional regulator
1809	 60.94	-1	1970273..1970656	-	127	121594245	-	Ajs_1884	-	hypothetical protein
1810	 58.61	-1	1971445..1972698	-	417	121594246	-	Ajs_1886	-	phage integrase family protein
1811	 63.10	0	1972732..1973739	+	335	121594247	-	Ajs_1887	-	hypothetical protein
1812	 68.24	0	1973823..1974203	-	126	121594248	-	Ajs_1888	-	hypothetical protein
1813	 69.57	0	1974225..1975256	-	343	121594249	-	Ajs_1889	-	alcohol dehydrogenase
1814	 65.03	0	1975352..1976875	-	507	121594250	-	Ajs_1890	-	aldehyde dehydrogenase
1815	 71.85	+1	1977165..1978880	-	571	121594251	-	Ajs_1891	-	Na+/Pi-cotransporter
1816	 71.52	+1	1979182..1981656	+	824	121594252	-	Ajs_1892	-	putative GAF sensor protein
1817	 65.56	0	1981740..1982369	-	209	121594253	-	Ajs_1893	-	uracil phosphoribosyltransferase
1818	 67.59	0	1982407..1983381	-	324	121594254	-	Ajs_1894	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1819	 66.11	0	1983579..1984838	-	419	121594255	-	Ajs_1895	-	nitric oxide dioxygenase
1820	 70.30	0	1984965..1986560	+	531	121594256	-	Ajs_1896	-	anaerobic nitric oxide reductase transcription regulator
1821	 66.20	0	1986789..1988300	-	503	121594257	-	Ajs_1897	-	protein of unknown function DUF853, NPT hydrolase putative
1822	 65.14	0	1988382..1989101	+	239	121594258	-	Ajs_1898	-	hypothetical protein
1823	 67.06	0	1989123..1990409	+	428	121594259	-	Ajs_1899	-	phosphoribosylamine--glycine ligase
1824	 68.46	0	1990406..1991410	+	334	121594260	-	Ajs_1900	-	coproporphyrinogen III oxidase
1825	 66.30	0	1991581..1992405	+	274	121594261	-	Ajs_1901	-	iojap-like protein
1826	 68.38	0	1992421..1992888	+	155	121594262	-	Ajs_1902	-	hypothetical protein
1827	 70.02	0	1992940..1993566	+	208	121594263	-	Ajs_1903	-	maf protein
1828	 66.01	0	1993594..1994358	-	254	121594264	-	Ajs_1904	-	CRP/FNR family transcriptional regulator
1829	 67.89	0	1994412..1996040	-	542	121594265	-	Ajs_1905	-	cytochrome d1, heme region
1830	 66.26	0	1996105..1997325	-	406	121594266	-	Ajs_1906	-	radical SAM domain-containing protein
1831	 70.60	0	1997328..1997810	-	160	121594267	-	Ajs_1907	-	AsnC family transcriptional regulator
1832	 66.87	0	1997800..1998282	-	160	121594268	-	Ajs_1908	-	AsnC family transcriptional regulator
1833	 71.73	+1	1998269..1999315	-	348	121594269	-	Ajs_1909	-	AsnC family transcriptional regulator
1834	 68.56	0	1999319..2000533	-	404	121594270	-	Ajs_1910	-	cytochrome d1, heme region
1835	 70.72	0	2000530..2000874	-	114	121594271	-	Ajs_1911	-	hypothetical protein
1836	 62.03	0	2000894..2002618	-	574	121594272	-	Ajs_1912	-	nitrite reductase (NO-forming)
1837	 69.96	0	2002805..2003653	+	282	121594273	-	Ajs_1913	-	uroporphyrin-III C-methyltransferase
1838	 66.13	0	2003730..2005217	+	495	121594274	-	Ajs_1914	-	ribonuclease G
1839	 66.06	0	2005623..2006774	-	383	121594275	-	Ajs_1915	-	putative aminotransferase
1840	 63.27	0	2006981..2008069	+	362	121594276	-	Ajs_1916	-	transposase, IS4 family protein
1841	 66.24	0	2008240..2009181	-	313	121594277	-	Ajs_1917	-	transcriptional regulator CysB-like protein
1842	 68.23	0	2009256..2009639	-	127	121594278	-	Ajs_1918	-	cobalamin (vitamin B12) biosynthesis CbiX protein
1843	 64.86	0	2009658..2010767	-	369	121594279	-	Ajs_1919	-	permease YjgP/YjgQ family protein
1844	 65.11	0	2010764..2011855	-	363	121594280	-	Ajs_1920	-	permease YjgP/YjgQ family protein
1845	 66.06	0	2011879..2013369	+	496	121594281	-	Ajs_1921	-	PepA aminopeptidase
1846	 61.90	0	2013395..2013835	+	146	121594282	-	Ajs_1922	-	DNA polymerase III chi subunit, HolC
1847	 66.20	0	2013832..2014263	+	143	121594283	-	Ajs_1923	-	hypothetical protein
1848	 61.39	-1	2014342..2015421	-	359	121594284	-	Ajs_1924	-	integrase catalytic subunit
1849	 61.99	0	2015585..2016718	+	377	121594285	-	Ajs_1925	-	extracellular ligand-binding receptor
1850	 63.10	0	2016796..2017803	-	335	121594286	-	Ajs_1926	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1851	 64.87	0	2018021..2018578	+	185	121594287	-	Ajs_1927	-	hypothetical protein
1852	 65.07	0	2018714..2019466	+	250	121594288	-	Ajs_1928	-	hypothetical protein
1853	 66.67	0	2019561..2020001	+	146	121594289	-	Ajs_1929	-	UspA domain-containing protein
1854	 64.75	0	2020097..2021089	-	330	121594290	-	Ajs_1930	-	hypothetical protein
1855	 67.51	0	2021239..2022423	-	394	121594291	-	Ajs_1931	-	beta-ketothiolase
1856	 70.50	0	2022533..2023315	-	260	121594292	-	Ajs_1932	-	short-chain dehydrogenase/reductase SDR
1857	 72.80	+1	2023347..2024015	-	222	121594293	-	Ajs_1933	-	ribosomal large subunit pseudouridine synthase A
1858	 69.35	0	2024071..2026233	-	720	121594294	-	Ajs_1934	-	signal transduction histidine kinase, nitrogen specific, NtrB
1859	 68.41	0	2026309..2026710	-	133	121594295	-	Ajs_1935	-	peptidylprolyl isomerase, FKBP-type
1860	 67.32	0	2026781..2029675	-	964	121594296	-	Ajs_1936	-	glycine dehydrogenase
1861	 66.40	0	2029744..2030118	-	124	121594297	-	Ajs_1937	-	glycine cleavage system H protein
1862	 68.61	0	2030222..2031352	-	376	121594298	-	Ajs_1938	-	glycine cleavage system T protein
1863	 64.40	0	2031630..2032907	-	425	121594299	-	Ajs_1939	-	TRAP dicarboxylate transporter, DctM subunit
1864	 65.45	0	2032990..2033484	-	164	121594300	-	Ajs_1940	-	tripartite ATP-independent periplasmic transporter DctQ
1865	 63.68	0	2033562..2034533	-	323	121594301	-	Ajs_1941	-	TRAP dicarboxylate transporter, DctP subunit
1866	 62.39	0	2034818..2035285	+	155	121594302	-	Ajs_1942	-	AsnC family transcriptional regulator
1867	 65.78	0	2035308..2036432	-	374	121594303	-	Ajs_1943	-	TonB-dependent receptor
1868	 64.55	0	2036753..2037979	+	408	121594304	-	Ajs_1944	-	transposase IS116/IS110/IS902 family protein
1869	 67.77	0	2038022..2038924	-	300	121594305	-	Ajs_1945	-	TonB-dependent receptor, plug
1870	 69.43	0	2039038..2040051	+	337	121594306	-	Ajs_1946	-	AraC family transcriptional regulator
1871	 69.06	0	2040142..2040936	-	264	121594307	-	Ajs_1947	-	ABC transporter related
1872	 66.33	0	2040953..2041840	-	295	121594308	-	Ajs_1948	-	inner-membrane translocator
1873	 65.12	0	2041946..2042914	-	322	121594309	-	Ajs_1949	-	hypothetical protein
1874	 64.38	0	2043133..2044839	-	568	121594310	-	Ajs_1950	-	electron-transferring-flavoprotein dehydrogenase
1875	 65.16	0	2045403..2046929	+	508	121594311	-	Ajs_1951	-	methyl-accepting chemotaxis sensory transducer
1876	 69.47	0	2046999..2048354	-	451	121594312	-	Ajs_1952	-	integral membrane sensor signal transduction histidine kinase
1877	 69.75	0	2048351..2049031	-	226	121594313	-	Ajs_1953	-	two component transcriptional regulator
1878	 67.52	0	2049173..2049874	+	233	121594314	-	Ajs_1954	-	PAP2 (acid phosphatase) superfamily protein-like protein
1879	 68.19	0	2049921..2051690	+	589	121594315	-	Ajs_1955	-	sulfatase
1880	 64.95	0	2051754..2052335	-	193	121594316	-	Ajs_1956	-	uncharacterized peroxidase-related enzyme
1881	 71.64	+1	2052352..2053035	-	227	121594317	-	Ajs_1957	-	DTW domain-containing protein
1882	 66.53	0	2053142..2054593	-	483	121594318	-	Ajs_1958	-	catalase
1883	 70.57	0	2054769..2056049	+	426	121594319	-	Ajs_1959	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1884	 66.30	0	2056169..2056714	-	181	121594320	-	Ajs_1960	-	LuxR family transcriptional regulator
1885	 65.54	0	2056797..2057504	+	235	121594321	-	Ajs_1961	-	3-oxoacid CoA-transferase, A subunit
1886	 64.16	0	2057508..2058146	+	212	121594322	-	Ajs_1962	-	butyryl-CoA:acetate CoA transferase
1887	 67.28	0	2058298..2059611	+	437	121594323	-	Ajs_1963	-	metal dependent phosphohydrolase
1888	 61.48	-1	2059746..2060747	+	333	121594324	-	Ajs_1964	-	hypothetical protein
1889	 74.09	+1	2060823..2061590	+	255	121594325	-	Ajs_1965	-	hypothetical protein
1890	 75.74	+1	2061556..2062965	+	469	121594326	-	Ajs_1966	-	hypothetical protein
1891	 71.17	0	2062962..2066156	+	1064	121594327	-	Ajs_1967	-	DNA polymerase III, alpha subunit
1892	 75.60	+1	2066220..2067473	-	417	121594328	-	Ajs_1968	-	Sel1 domain-containing protein
1893	 67.30	0	2067509..2069254	-	581	121594329	-	Ajs_1969	-	hypothetical protein
1894	 67.86	0	2069349..2069768	-	139	121594330	-	Ajs_1970	-	hypothetical protein
1895	 61.76	0	2069835..2070425	-	196	121594331	-	Ajs_1971	-	hypothetical protein
1896	 63.43	0	2073679..2075007	-	442	121594332	-	Ajs_1976	-	transposase IS116/IS110/IS902 family protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.