IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1758	 65.05	0	1901820..1902623	-	267	121594194	-	Ajs_1827	-	protein phosphatase 2C domain-containing protein
1759	 68.51	0	1902794..1904860	+	688	121594195	-	Ajs_1828	-	helicase c2
1760	 63.46	0	1904823..1905725	-	300	121594196	-	Ajs_1829	-	putative transmembrane protein
1761	 63.83	0	1905731..1909294	+	1187	121594197	-	Ajs_1830	-	DNA polymerase III, alpha subunit
1762	 62.50	0	1909333..1909740	+	135	121594198	-	Ajs_1831	-	ATP-dependent Clp protease adaptor protein ClpS
1763	 63.94	0	1909800..1912148	+	782	121594199	-	Ajs_1832	-	ATP-dependent Clp protease, ATP-binding subunit clpA
1764	 67.82	0	1912399..1913007	+	202	121594200	-	Ajs_1833	-	TetR family transcriptional regulator
1765	 70.75	0	1913004..1914155	+	383	121594201	-	Ajs_1834	-	RND family efflux transporter MFP subunit
1766	 65.75	0	1914152..1915351	+	399	121594202	-	Ajs_1835	-	hypothetical protein
1767	 68.07	0	1915362..1916072	+	236	121594203	-	Ajs_1836	-	ABC transporter related
1768	 73.82	+1	1916165..1917589	-	474	121594204	-	Ajs_1837	-	lytic murein transglycosylase
1769	 68.82	0	1917634..1919073	+	479	121594205	sbcB	Ajs_1838	-	exonuclease I
1770	 70.85	0	1919082..1919966	+	294	121594206	-	Ajs_1839	-	silent information regulator protein Sir2
1771	 72.50	+1	1920037..1922040	+	667	121594207	-	Ajs_1840	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1772	 57.76	-1	1922296..1922643	-	115	121594208	-	Ajs_1841	-	hypothetical protein
1773	 58.28	-1	1922640..1925678	-	1012	121594209	-	Ajs_1842	-	transposase Tn3 family protein
1774	 61.94	0	1926335..1927159	-	274	121594210	-	Ajs_1844	-	integrase catalytic subunit
1775	 60.22	-1	1927207..1927485	-	92	121594211	-	Ajs_1845	-	transposase IS3/IS911 family protein
1776	 59.17	-1	1927593..1927952	+	119	121594212	-	Ajs_1846	-	hypothetical protein
1777	 61.43	-1	1928110..1929465	+	451	121594213	-	Ajs_1847	-	outer membrane efflux protein
1778	 57.51	-1	1929468..1931084	+	538	121594214	-	Ajs_1848	-	RND family efflux transporter MFP subunit
1779	 59.30	-1	1931100..1934288	+	1062	121594215	-	Ajs_1849	-	CzcA family heavy metal efflux protein
1780	 60.37	-1	1934352..1934732	+	126	121594216	-	Ajs_1850	-	hypothetical protein
1781	 57.67	-1	1935233..1935721	-	162	121594217	-	Ajs_1851	-	MerR family transcriptional regulator
1782	 65.01	0	1936716..1939004	+	762	121594218	-	Ajs_1853	-	transposase Tn3 family protein
1783	 69.51	0	1939130..1939867	-	245	121594219	-	Ajs_1854	-	IstB ATP binding domain-containing protein
1784	 68.50	0	1939904..1941427	-	507	121594220	-	Ajs_1855	-	integrase catalytic subunit
1785	 59.12	-1	1942832..1943149	-	105	121594221	-	Ajs_1857	-	hypothetical protein
1786	 63.96	0	1943299..1944963	-	554	121594222	-	Ajs_1858	-	phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase
1787	 64.35	0	1945078..1945509	-	143	121594223	-	Ajs_1859	-	phage transcriptional regulator, AlpA
1788	 64.44	0	1945732..1946943	+	403	121594224	-	Ajs_1860	-	hypothetical protein
1789	 64.39	0	1946960..1947619	+	219	121594225	-	Ajs_1861	-	hypothetical protein
1790	 66.97	0	1947628..1948608	+	326	121594226	-	Ajs_1862	-	hypothetical protein
1791	 60.41	-1	1948687..1949772	+	361	121594227	-	Ajs_1863	-	putative transposase
1792	 64.46	0	1949775..1950590	+	271	121594228	-	Ajs_1864	-	hypothetical protein
1793	 61.77	0	1950627..1951790	+	387	121594229	-	Ajs_1865	-	patatin
1794	 60.58	-1	1951883..1952227	+	114	121594230	-	Ajs_1866	-	putative sigma E regulatory protein, MucB/RseB
1795	 67.97	0	1952208..1953434	-	408	121594231	-	Ajs_1867	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1796	 56.17	-2	1955051..1955650	-	199	121594232	-	Ajs_1869	-	membrane protein-like protein
1797	 63.27	0	1955963..1957051	-	362	121594233	-	Ajs_1871	-	transposase, IS4 family protein
1798	 66.67	0	1957134..1957610	-	158	121594234	-	Ajs_1872	-	hypothetical protein
1799	 63.84	0	1957630..1958301	-	223	121594235	-	Ajs_1873	-	PAP2 (acid phosphatase) superfamily protein-like protein
1800	 61.39	-1	1958491..1959570	+	359	121594236	-	Ajs_1874	-	integrase catalytic subunit
1801	 59.88	-1	1959656..1960156	+	166	121594237	-	Ajs_1875	-	hypothetical protein
1802	 61.21	-1	1960193..1961035	+	280	121594238	-	Ajs_1876	-	hypothetical protein
1803	 60.57	-1	1961442..1962671	+	409	121594239	-	Ajs_1877	-	transposase Tn3
1804	 65.34	0	1962744..1965386	-	880	121594240	-	Ajs_1878	-	heavy metal translocating P-type ATPase
1805	 63.87	0	1965565..1966851	+	428	121594241	-	Ajs_1879	-	sodium/calcium exchanger membrane region
1806	 60.49	-1	1967219..1967623	-	134	121594242	-	Ajs_1880	-	hypothetical protein
1807	 69.02	0	1968234..1969934	+	566	121594243	-	Ajs_1882	-	phage integrase family protein
1808	 63.64	0	1969947..1970276	-	109	121594244	-	Ajs_1883	-	XRE family transcriptional regulator
1809	 60.94	-1	1970273..1970656	-	127	121594245	-	Ajs_1884	-	hypothetical protein
1810	 58.61	-1	1971445..1972698	-	417	121594246	-	Ajs_1886	-	phage integrase family protein
1811	 63.10	0	1972732..1973739	+	335	121594247	-	Ajs_1887	-	hypothetical protein
1812	 68.24	0	1973823..1974203	-	126	121594248	-	Ajs_1888	-	hypothetical protein
1813	 69.57	0	1974225..1975256	-	343	121594249	-	Ajs_1889	-	alcohol dehydrogenase
1814	 65.03	0	1975352..1976875	-	507	121594250	-	Ajs_1890	-	aldehyde dehydrogenase
1815	 71.85	+1	1977165..1978880	-	571	121594251	-	Ajs_1891	-	Na+/Pi-cotransporter
1816	 71.52	+1	1979182..1981656	+	824	121594252	-	Ajs_1892	-	putative GAF sensor protein
1817	 65.56	0	1981740..1982369	-	209	121594253	-	Ajs_1893	-	uracil phosphoribosyltransferase
1818	 67.59	0	1982407..1983381	-	324	121594254	-	Ajs_1894	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1819	 66.11	0	1983579..1984838	-	419	121594255	-	Ajs_1895	-	nitric oxide dioxygenase
1820	 70.30	0	1984965..1986560	+	531	121594256	-	Ajs_1896	-	anaerobic nitric oxide reductase transcription regulator
1821	 66.20	0	1986789..1988300	-	503	121594257	-	Ajs_1897	-	protein of unknown function DUF853, NPT hydrolase putative
1822	 65.14	0	1988382..1989101	+	239	121594258	-	Ajs_1898	-	hypothetical protein
1823	 67.06	0	1989123..1990409	+	428	121594259	-	Ajs_1899	-	phosphoribosylamine--glycine ligase
1824	 68.46	0	1990406..1991410	+	334	121594260	-	Ajs_1900	-	coproporphyrinogen III oxidase
1825	 66.30	0	1991581..1992405	+	274	121594261	-	Ajs_1901	-	iojap-like protein
1826	 68.38	0	1992421..1992888	+	155	121594262	-	Ajs_1902	-	hypothetical protein
1827	 70.02	0	1992940..1993566	+	208	121594263	-	Ajs_1903	-	maf protein
1828	 66.01	0	1993594..1994358	-	254	121594264	-	Ajs_1904	-	CRP/FNR family transcriptional regulator
1829	 67.89	0	1994412..1996040	-	542	121594265	-	Ajs_1905	-	cytochrome d1, heme region
1830	 66.26	0	1996105..1997325	-	406	121594266	-	Ajs_1906	-	radical SAM domain-containing protein
1831	 70.60	0	1997328..1997810	-	160	121594267	-	Ajs_1907	-	AsnC family transcriptional regulator
1832	 66.87	0	1997800..1998282	-	160	121594268	-	Ajs_1908	-	AsnC family transcriptional regulator
1833	 71.73	+1	1998269..1999315	-	348	121594269	-	Ajs_1909	-	AsnC family transcriptional regulator
1834	 68.56	0	1999319..2000533	-	404	121594270	-	Ajs_1910	-	cytochrome d1, heme region
1835	 70.72	0	2000530..2000874	-	114	121594271	-	Ajs_1911	-	hypothetical protein
1836	 62.03	0	2000894..2002618	-	574	121594272	-	Ajs_1912	-	nitrite reductase (NO-forming)
1837	 69.96	0	2002805..2003653	+	282	121594273	-	Ajs_1913	-	uroporphyrin-III C-methyltransferase
1838	 66.13	0	2003730..2005217	+	495	121594274	-	Ajs_1914	-	ribonuclease G
1839	 66.06	0	2005623..2006774	-	383	121594275	-	Ajs_1915	-	putative aminotransferase
1840	 63.27	0	2006981..2008069	+	362	121594276	-	Ajs_1916	-	transposase, IS4 family protein
1841	 66.24	0	2008240..2009181	-	313	121594277	-	Ajs_1917	-	transcriptional regulator CysB-like protein
1842	 68.23	0	2009256..2009639	-	127	121594278	-	Ajs_1918	-	cobalamin (vitamin B12) biosynthesis CbiX protein
1843	 64.86	0	2009658..2010767	-	369	121594279	-	Ajs_1919	-	permease YjgP/YjgQ family protein
1844	 65.11	0	2010764..2011855	-	363	121594280	-	Ajs_1920	-	permease YjgP/YjgQ family protein
1845	 66.06	0	2011879..2013369	+	496	121594281	-	Ajs_1921	-	PepA aminopeptidase
1846	 61.90	0	2013395..2013835	+	146	121594282	-	Ajs_1922	-	DNA polymerase III chi subunit, HolC
1847	 66.20	0	2013832..2014263	+	143	121594283	-	Ajs_1923	-	hypothetical protein
1848	 61.39	-1	2014342..2015421	-	359	121594284	-	Ajs_1924	-	integrase catalytic subunit
1849	 61.99	0	2015585..2016718	+	377	121594285	-	Ajs_1925	-	extracellular ligand-binding receptor
1850	 63.10	0	2016796..2017803	-	335	121594286	-	Ajs_1926	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1851	 64.87	0	2018021..2018578	+	185	121594287	-	Ajs_1927	-	hypothetical protein
1852	 65.07	0	2018714..2019466	+	250	121594288	-	Ajs_1928	-	hypothetical protein
1853	 66.67	0	2019561..2020001	+	146	121594289	-	Ajs_1929	-	UspA domain-containing protein
1854	 64.75	0	2020097..2021089	-	330	121594290	-	Ajs_1930	-	hypothetical protein
1855	 67.51	0	2021239..2022423	-	394	121594291	-	Ajs_1931	-	beta-ketothiolase
1856	 70.50	0	2022533..2023315	-	260	121594292	-	Ajs_1932	-	short-chain dehydrogenase/reductase SDR
1857	 72.80	+1	2023347..2024015	-	222	121594293	-	Ajs_1933	-	ribosomal large subunit pseudouridine synthase A
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.