IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1707	 65.00	0	1841809..1842891	+	360	121594143	-	Ajs_1775	-	murein-DD-endopeptidase
1708	 64.70	0	1842963..1843775	-	270	121594144	-	Ajs_1776	-	IclR family transcriptional regulator
1709	 65.33	0	1844011..1845285	-	424	121594145	-	Ajs_1777	-	acyl-CoA dehydrogenase domain-containing protein
1710	 67.13	0	1845317..1846402	-	361	121594146	-	Ajs_1778	-	aminoglycoside phosphotransferase
1711	 64.72	0	1846527..1847246	-	239	121594147	-	Ajs_1779	-	Crp/FNR family transcriptional regulator
1712	 69.53	0	1847449..1848216	-	255	121594148	-	Ajs_1780	-	enoyl-CoA hydratase/isomerase
1713	 69.63	0	1848239..1849759	-	506	121594149	-	Ajs_1781	-	3-hydroxybutyryl-CoA dehydrogenase
1714	 70.34	0	1849836..1851902	+	688	121594150	-	Ajs_1782	-	hypothetical protein
1715	 70.65	0	1851933..1852862	-	309	121594151	-	Ajs_1783	-	thiamine-phosphate pyrophosphorylase
1716	 69.62	0	1852865..1853677	-	270	121594152	thiG	Ajs_1784	-	thiazole synthase
1717	 66.16	0	1853689..1853886	-	65	121594153	-	Ajs_1785	-	thiamine biosynthesis protein ThiS
1718	 70.49	0	1853883..1855007	-	374	121594154	-	Ajs_1786	-	FAD dependent oxidoreductase
1719	 69.90	0	1855225..1856151	+	308	121594155	-	Ajs_1787	-	phosphomethylpyrimidine kinase
1720	 72.12	+1	1856219..1856695	-	158	121594156	-	Ajs_1788	-	SH3 type 3 domain-containing protein
1721	 72.21	+1	1856955..1858019	-	354	121594157	-	Ajs_1789	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1722	 60.49	-1	1858045..1858368	-	107	121594158	-	Ajs_1790	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1723	 70.55	0	1858471..1859859	-	462	121594159	-	Ajs_1791	-	sulfate adenylyltransferase subunit 1
1724	 67.42	0	1859859..1860791	-	310	121594160	-	Ajs_1792	-	sulfate adenylyltransferase subunit 2
1725	 68.85	0	1860853..1861494	-	213	121594161	-	Ajs_1793	-	phosphoadenylylsulfate reductase (thioredoxin)
1726	 69.95	0	1861491..1861886	-	131	121594162	-	Ajs_1794	-	hypothetical protein
1727	 68.57	0	1861912..1863699	-	595	121594163	-	Ajs_1795	-	nitrite/sulfite reductase hemoprotein beta subunit
1728	 72.60	+1	1863853..1865772	-	639	121594164	-	Ajs_1796	-	hypothetical protein
1729	 63.96	0	1865808..1866473	-	221	121594165	-	Ajs_1797	-	hypothetical protein
1730	 62.64	0	1866882..1867154	-	90	121594166	-	Ajs_1798	-	hypothetical protein
1731	 62.09	0	1867242..1868312	+	356	121594167	-	Ajs_1799	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1732	 66.24	0	1868514..1869212	+	232	121594168	-	Ajs_1800	-	glutathione S-transferase domain-containing protein
1733	 65.03	0	1869256..1870722	+	488	121594169	-	Ajs_1801	-	deoxyribodipyrimidine photo-lyase type I
1734	 60.79	-1	1871054..1872670	+	538	121594170	-	Ajs_1802	-	phage integrase family protein
1735	 57.22	-1	1873051..1873632	+	193	121594171	-	Ajs_1803	-	resolvase domain-containing protein
1736	 50.90	-2	1874137..1874916	+	259	121594172	-	Ajs_1804	-	hypothetical protein
1737	 42.98	-2	1875801..1876163	-	120	121594173	-	Ajs_1805	-	hypothetical protein
1738	 62.84	0	1876844..1877104	+	86	121594174	-	Ajs_1806	-	XRE family transcriptional regulator
1739	 62.52	0	1877112..1877930	-	272	121594175	-	Ajs_1807	-	hypothetical protein
1740	 65.54	0	1878688..1879488	-	266	121594176	-	Ajs_1809	-	enoyl-[acyl-carrier-protein] reductase [NADH]
1741	 66.40	0	1879578..1881452	+	624	121594177	-	Ajs_1810	-	extracellular solute-binding protein
1742	 63.58	0	1881460..1882497	+	345	121594178	-	Ajs_1811	-	binding-protein-dependent transport systems inner membrane component
1743	 65.30	0	1882501..1883598	+	365	121594179	-	Ajs_1812	-	binding-protein-dependent transport systems inner membrane component
1744	 70.45	0	1883620..1885257	+	545	121594180	-	Ajs_1813	-	ABC transporter related
1745	 69.58	0	1885585..1886751	+	388	121594181	-	Ajs_1814	-	putative lipoprotein
1746	 70.65	0	1886829..1887656	+	275	121594182	-	Ajs_1815	-	hydroxypyruvate isomerase
1747	 72.66	+1	1888042..1888908	-	288	121594183	-	Ajs_1816	-	UspA domain-containing protein
1748	 70.95	0	1889057..1889989	-	310	121594184	-	Ajs_1817	-	LysR family transcriptional regulator
1749	 73.10	+1	1890086..1891438	+	450	121594185	-	Ajs_1818	-	hypothetical protein
1750	 67.22	0	1891448..1891810	+	120	121594186	-	Ajs_1819	-	hypothetical protein
1751	 68.19	0	1891855..1892841	+	328	121594187	-	Ajs_1820	-	hypothetical protein
1752	 67.63	0	1892910..1894055	-	381	121594188	-	Ajs_1821	-	hypothetical protein
1753	 64.03	0	1894185..1897061	+	958	121594189	kgd	Ajs_1822	-	alpha-ketoglutarate decarboxylase
1754	 66.67	0	1897111..1898376	+	421	121594190	-	Ajs_1823	-	2-oxoglutarate dehydrogenase E2 component
1755	 64.50	0	1898466..1899893	+	475	121594191	-	Ajs_1824	-	dihydrolipoamide dehydrogenase
1756	 63.95	0	1899971..1901074	+	367	121594192	-	Ajs_1825	-	AFG1 family ATPase
1757	 71.03	0	1901074..1901760	+	228	121594193	-	Ajs_1826	-	hypothetical protein
1758	 65.05	0	1901820..1902623	-	267	121594194	-	Ajs_1827	-	protein phosphatase 2C domain-containing protein
1759	 68.51	0	1902794..1904860	+	688	121594195	-	Ajs_1828	-	helicase c2
1760	 63.46	0	1904823..1905725	-	300	121594196	-	Ajs_1829	-	putative transmembrane protein
1761	 63.83	0	1905731..1909294	+	1187	121594197	-	Ajs_1830	-	DNA polymerase III, alpha subunit
1762	 62.50	0	1909333..1909740	+	135	121594198	-	Ajs_1831	-	ATP-dependent Clp protease adaptor protein ClpS
1763	 63.94	0	1909800..1912148	+	782	121594199	-	Ajs_1832	-	ATP-dependent Clp protease, ATP-binding subunit clpA
1764	 67.82	0	1912399..1913007	+	202	121594200	-	Ajs_1833	-	TetR family transcriptional regulator
1765	 70.75	0	1913004..1914155	+	383	121594201	-	Ajs_1834	-	RND family efflux transporter MFP subunit
1766	 65.75	0	1914152..1915351	+	399	121594202	-	Ajs_1835	-	hypothetical protein
1767	 68.07	0	1915362..1916072	+	236	121594203	-	Ajs_1836	-	ABC transporter related
1768	 73.82	+1	1916165..1917589	-	474	121594204	-	Ajs_1837	-	lytic murein transglycosylase
1769	 68.82	0	1917634..1919073	+	479	121594205	sbcB	Ajs_1838	-	exonuclease I
1770	 70.85	0	1919082..1919966	+	294	121594206	-	Ajs_1839	-	silent information regulator protein Sir2
1771	 72.50	+1	1920037..1922040	+	667	121594207	-	Ajs_1840	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1772	 57.76	-1	1922296..1922643	-	115	121594208	-	Ajs_1841	-	hypothetical protein
1773	 58.28	-1	1922640..1925678	-	1012	121594209	-	Ajs_1842	-	transposase Tn3 family protein
1774	 61.94	0	1926335..1927159	-	274	121594210	-	Ajs_1844	-	integrase catalytic subunit
1775	 60.22	-1	1927207..1927485	-	92	121594211	-	Ajs_1845	-	transposase IS3/IS911 family protein
1776	 59.17	-1	1927593..1927952	+	119	121594212	-	Ajs_1846	-	hypothetical protein
1777	 61.43	-1	1928110..1929465	+	451	121594213	-	Ajs_1847	-	outer membrane efflux protein
1778	 57.51	-1	1929468..1931084	+	538	121594214	-	Ajs_1848	-	RND family efflux transporter MFP subunit
1779	 59.30	-1	1931100..1934288	+	1062	121594215	-	Ajs_1849	-	CzcA family heavy metal efflux protein
1780	 60.37	-1	1934352..1934732	+	126	121594216	-	Ajs_1850	-	hypothetical protein
1781	 57.67	-1	1935233..1935721	-	162	121594217	-	Ajs_1851	-	MerR family transcriptional regulator
1782	 65.01	0	1936716..1939004	+	762	121594218	-	Ajs_1853	-	transposase Tn3 family protein
1783	 69.51	0	1939130..1939867	-	245	121594219	-	Ajs_1854	-	IstB ATP binding domain-containing protein
1784	 68.50	0	1939904..1941427	-	507	121594220	-	Ajs_1855	-	integrase catalytic subunit
1785	 59.12	-1	1942832..1943149	-	105	121594221	-	Ajs_1857	-	hypothetical protein
1786	 63.96	0	1943299..1944963	-	554	121594222	-	Ajs_1858	-	phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase
1787	 64.35	0	1945078..1945509	-	143	121594223	-	Ajs_1859	-	phage transcriptional regulator, AlpA
1788	 64.44	0	1945732..1946943	+	403	121594224	-	Ajs_1860	-	hypothetical protein
1789	 64.39	0	1946960..1947619	+	219	121594225	-	Ajs_1861	-	hypothetical protein
1790	 66.97	0	1947628..1948608	+	326	121594226	-	Ajs_1862	-	hypothetical protein
1791	 60.41	-1	1948687..1949772	+	361	121594227	-	Ajs_1863	-	putative transposase
1792	 64.46	0	1949775..1950590	+	271	121594228	-	Ajs_1864	-	hypothetical protein
1793	 61.77	0	1950627..1951790	+	387	121594229	-	Ajs_1865	-	patatin
1794	 60.58	-1	1951883..1952227	+	114	121594230	-	Ajs_1866	-	putative sigma E regulatory protein, MucB/RseB
1795	 67.97	0	1952208..1953434	-	408	121594231	-	Ajs_1867	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1796	 56.17	-2	1955051..1955650	-	199	121594232	-	Ajs_1869	-	membrane protein-like protein
1797	 63.27	0	1955963..1957051	-	362	121594233	-	Ajs_1871	-	transposase, IS4 family protein
1798	 66.67	0	1957134..1957610	-	158	121594234	-	Ajs_1872	-	hypothetical protein
1799	 63.84	0	1957630..1958301	-	223	121594235	-	Ajs_1873	-	PAP2 (acid phosphatase) superfamily protein-like protein
1800	 61.39	-1	1958491..1959570	+	359	121594236	-	Ajs_1874	-	integrase catalytic subunit
1801	 59.88	-1	1959656..1960156	+	166	121594237	-	Ajs_1875	-	hypothetical protein
1802	 61.21	-1	1960193..1961035	+	280	121594238	-	Ajs_1876	-	hypothetical protein
1803	 60.57	-1	1961442..1962671	+	409	121594239	-	Ajs_1877	-	transposase Tn3
1804	 65.34	0	1962744..1965386	-	880	121594240	-	Ajs_1878	-	heavy metal translocating P-type ATPase
1805	 63.87	0	1965565..1966851	+	428	121594241	-	Ajs_1879	-	sodium/calcium exchanger membrane region
1806	 60.49	-1	1967219..1967623	-	134	121594242	-	Ajs_1880	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.