IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1608	 60.31	-1	1736999..1737784	-	261	121594044	-	Ajs_1673	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1609	 59.14	-1	1737852..1738130	-	92	121594045	-	Ajs_1674	-	transcriptional regulator BolA
1610	 60.25	-1	1738127..1738687	-	186	121594046	-	Ajs_1675	-	intracellular septation protein A
1611	 67.15	0	1738684..1739097	-	137	121594047	-	Ajs_1676	-	methionine-R-sulfoxide reductase
1612	 67.54	0	1739094..1740581	-	495	121594048	-	Ajs_1677	-	hypothetical protein
1613	 66.18	0	1740754..1742391	+	545	121594049	-	Ajs_1678	-	acyl-CoA synthetase
1614	 61.33	-1	1742529..1743764	+	411	121594050	-	Ajs_1679	-	extracellular ligand-binding receptor
1615	 64.47	0	1743840..1744793	+	317	121594051	-	Ajs_1680	-	inner-membrane translocator
1616	 65.10	0	1744800..1746137	+	445	121594052	-	Ajs_1681	-	inner-membrane translocator
1617	 65.39	0	1746137..1746919	+	260	121594053	-	Ajs_1682	-	ABC transporter related
1618	 64.80	0	1746923..1747618	+	231	121594054	-	Ajs_1683	-	ABC transporter related
1619	 66.38	0	1747811..1749910	+	699	121594055	-	Ajs_1684	-	short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
1620	 67.43	0	1749956..1751131	+	391	121594056	-	Ajs_1685	-	acetyl-CoA acetyltransferase
1621	 61.35	-1	1751473..1752657	+	394	121594057	-	Ajs_1686	-	diguanylate cyclase
1622	 66.98	0	1752727..1754655	+	642	121594058	-	Ajs_1687	-	acyl-CoA dehydrogenase domain-containing protein
1623	 72.65	+1	1754716..1755216	+	166	121594059	-	Ajs_1688	-	NAD(P)H dehydrogenase (quinone)
1624	 73.79	+1	1755644..1757215	-	523	121594060	-	Ajs_1689	-	phosphonate ABC transporter, inner membrane subunit
1625	 75.42	+1	1757206..1758039	-	277	121594061	-	Ajs_1690	-	ABC transporter related
1626	 67.45	0	1758161..1759051	-	296	121594062	-	Ajs_1691	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1627	 70.71	0	1759177..1760535	-	452	121594063	-	Ajs_1692	-	major facilitator superfamily transporter
1628	 69.14	0	1760620..1761753	-	377	121594064	-	Ajs_1693	-	extracellular ligand-binding receptor
1629	 68.81	0	1762987..1763778	+	263	121594065	-	Ajs_1695	-	gluconate 5-dehydrogenase
1630	 64.86	0	1763815..1764258	+	147	121594066	-	Ajs_1696	-	hypothetical protein
1631	 68.04	0	1764346..1765362	+	338	121594067	-	Ajs_1697	-	alcohol dehydrogenase
1632	 72.04	+1	1765359..1765823	+	154	121594068	-	Ajs_1698	-	GCN5-related N-acetyltransferase
1633	 69.47	0	1765872..1766798	+	308	121594069	-	Ajs_1699	-	putative glutathione S-transferase-related protein
1634	 70.53	0	1766833..1767738	+	301	121594070	-	Ajs_1700	-	hypothetical protein
1635	 76.06	+2	1767849..1768487	-	212	121594071	-	Ajs_1701	-	hypothetical protein
1636	 72.07	+1	1768719..1769957	+	412	121594072	-	Ajs_1702	-	Bcr/CflA subfamily drug resistance transporter
1637	 72.57	+1	1769954..1771360	+	468	121594073	-	Ajs_1703	-	major facilitator superfamily transporter
1638	 70.86	0	1771506..1772603	-	365	121594074	-	Ajs_1704	-	hypothetical protein
1639	 70.59	0	1772607..1773014	-	135	121594075	-	Ajs_1705	-	hypothetical protein
1640	 64.04	0	1773011..1774534	-	507	121594076	-	Ajs_1706	-	hypothetical protein
1641	 67.92	0	1774586..1776982	+	798	121594077	-	Ajs_1707	-	RNA-binding S1 domain-containing protein
1642	 71.15	0	1777055..1777879	+	274	121594078	-	Ajs_1708	-	putative signal transduction protein
1643	 70.51	0	1777908..1779053	+	381	121594079	-	Ajs_1709	-	hypothetical protein
1644	 71.21	+1	1779084..1780535	-	483	121594080	-	Ajs_1710	-	putative PAS/PAC sensor protein
1645	 70.27	0	1780640..1781776	-	378	121594081	-	Ajs_1711	-	iron-containing alcohol dehydrogenase
1646	 71.35	+1	1781839..1782714	+	291	121594082	-	Ajs_1712	-	hydratase/decarboxylase
1647	 72.12	+1	1782731..1783720	+	329	121594083	-	Ajs_1713	-	alpha/beta hydrolase domain-containing protein
1648	 68.87	0	1783742..1784605	+	287	121594084	-	Ajs_1714	-	thioesterase superfamily protein
1649	 70.51	0	1784665..1785600	-	311	121594085	-	Ajs_1715	-	glycine cleavage T protein (aminomethyl transferase)
1650	 70.16	0	1785646..1786647	+	333	121594086	-	Ajs_1716	-	aminodeoxychorismate lyase
1651	 69.27	0	1786644..1787297	+	217	121594087	-	Ajs_1717	-	thymidylate kinase
1652	 72.89	+1	1787294..1788289	+	331	121594088	-	Ajs_1718	-	DNA-directed DNA polymerase
1653	 65.83	0	1788306..1788665	+	119	121594089	-	Ajs_1719	-	type IV pilus assembly PilZ
1654	 67.16	0	1788739..1789548	+	269	121594090	-	Ajs_1720	-	TatD family hydrolase
1655	 71.03	0	1789545..1790231	+	228	121594091	-	Ajs_1721	-	ankyrin
1656	 67.00	0	1790355..1792139	-	594	121594092	-	Ajs_1722	-	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
1657	 63.81	0	1792252..1793583	+	443	121594093	-	Ajs_1723	-	TolB domain-containing protein
1658	 66.11	0	1793623..1794165	+	180	121594094	-	Ajs_1724	-	TonB box domain-containing protein
1659	 62.85	0	1794165..1794950	+	261	121594095	-	Ajs_1725	-	TPR repeat-containing protein
1660	 61.05	-1	1794947..1795729	+	260	121594096	-	Ajs_1726	-	UBA/THIF-type NAD/FAD binding protein
1661	 55.56	-2	1796105..1796374	-	89	121594097	-	Ajs_1727	-	hypothetical protein
1662	 66.67	0	1796361..1796789	-	142	121594098	-	Ajs_1728	-	hypothetical protein
1663	 62.81	0	1796811..1797251	-	146	121594099	-	Ajs_1729	-	hypothetical protein
1664	 61.32	-1	1797273..1797983	-	236	121594100	-	Ajs_1730	-	hypothetical protein
1665	 64.36	0	1797986..1798288	-	100	121594101	-	Ajs_1731	-	hypothetical protein
1666	 60.50	-1	1798285..1798722	-	145	121594102	-	Ajs_1732	-	hypothetical protein
1667	 69.51	0	1798805..1799542	-	245	121594103	-	Ajs_1733	-	IstB ATP binding domain-containing protein
1668	 64.55	0	1800834..1802060	+	408	121594104	-	Ajs_1735	-	transposase IS116/IS110/IS902 family protein
1669	 65.20	0	1802098..1802712	-	204	121594105	-	Ajs_1736	-	integrase, catalytic region
1670	 66.27	0	1803000..1803251	-	83	121594106	-	Ajs_1737	-	hypothetical protein
1671	 55.77	-2	1803552..1803707	+	51	121594107	-	Ajs_1738	-	transposase mutator family protein
1672	 66.87	0	1803720..1804682	-	320	121594108	-	Ajs_1739	-	transposase IS116/IS110/IS902 family protein
1673	 55.56	-2	1806941..1807093	+	50	121594109	-	Ajs_1741	-	hypothetical protein
1674	 65.08	0	1807100..1808614	-	504	121594110	-	Ajs_1742	-	lytic transglycosylase, catalytic
1675	 64.23	0	1808611..1809390	-	259	121594111	-	Ajs_1743	-	hydroxyacylglutathione hydrolase
1676	 69.74	0	1809389..1810168	+	259	121594112	-	Ajs_1744	-	methyltransferase type 11
1677	 66.22	0	1810205..1810651	+	148	121594113	-	Ajs_1745	-	ribonuclease H
1678	 69.35	0	1810678..1811013	-	111	121594114	-	Ajs_1746	-	thioredoxin domain-containing protein
1679	 67.70	0	1811096..1812454	-	452	121594115	-	Ajs_1747	-	molybdopterin molybdochelatase
1680	 69.34	0	1812481..1813116	-	211	121594116	mobA	Ajs_1748	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1681	 68.95	0	1813177..1814313	-	378	121594117	moaA	Ajs_1749	-	molybdenum cofactor biosynthesis protein A
1682	 71.21	+1	1814445..1815302	+	285	121594118	-	Ajs_1750	-	hypothetical protein
1683	 61.39	-1	1815689..1816768	-	359	121594119	-	Ajs_1751	-	integrase catalytic subunit
1684	 61.39	-1	1816871..1817950	-	359	121594120	-	Ajs_1752	-	integrase catalytic subunit
1685	 61.18	-1	1818155..1819138	-	327	121594121	-	Ajs_1753	-	transposase, IS4 family protein
1686	 60.41	-1	1819285..1820370	+	361	121594122	-	Ajs_1754	-	putative transposase
1687	 69.16	0	1820420..1820980	-	186	121594123	-	Ajs_1755	-	hypothetical protein
1688	 69.80	0	1821056..1822489	-	477	121594124	-	Ajs_1756	-	aldehyde dehydrogenase
1689	 68.97	0	1822597..1824681	-	694	121594125	hppA	Ajs_1757	-	membrane-bound proton-translocating pyrophosphatase
1690	 60.25	-1	1824891..1825451	+	186	121594126	-	Ajs_1758	-	inorganic diphosphatase
1691	 64.50	0	1825667..1826173	+	168	121594127	-	Ajs_1759	-	putative CheW protein
1692	 68.22	0	1826242..1827462	-	406	121594128	-	Ajs_1760	-	hypothetical protein
1693	 67.09	0	1827768..1829432	+	554	121594129	-	Ajs_1761	-	NAD+ synthetase
1694	 64.90	0	1829500..1829838	+	112	121594130	-	Ajs_1762	-	nitrogen regulatory protein P-II
1695	 66.84	0	1829889..1830482	-	197	121594131	-	Ajs_1763	-	hypothetical protein
1696	 65.67	0	1830475..1830876	-	133	121594132	-	Ajs_1764	-	diacylglycerol kinase
1697	 65.95	0	1830973..1831533	-	186	121594133	-	Ajs_1765	-	RDD domain-containing protein
1698	 68.97	0	1831564..1832388	-	274	121594134	-	Ajs_1766	-	putative transmembrane protein
1699	 66.23	0	1832402..1832863	-	153	121594135	-	Ajs_1767	-	putative transmembrane protein
1700	 56.44	-2	1832860..1833426	-	188	121594136	-	Ajs_1768	-	RNA polymerase factor sigma-70
1701	 62.83	0	1833713..1835509	+	598	121594137	-	Ajs_1769	-	acetolactate synthase 3 catalytic subunit
1702	 61.99	0	1835650..1836141	+	163	121594138	ilvH	Ajs_1770	-	acetolactate synthase 3 regulatory subunit
1703	 63.23	0	1836199..1837215	+	338	121594139	-	Ajs_1771	-	ketol-acid reductoisomerase
1704	 64.15	0	1837391..1838224	+	277	121594140	-	Ajs_1772	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1705	 62.25	0	1838447..1840120	+	557	121594141	-	Ajs_1773	-	2-isopropylmalate synthase
1706	 63.35	0	1840156..1841694	+	512	121594142	-	Ajs_1774	-	2-isopropylmalate synthase
1707	 65.00	0	1841809..1842891	+	360	121594143	-	Ajs_1775	-	murein-DD-endopeptidase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.