IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1558	 62.07	0	1675368..1675955	-	195	121593994	-	Ajs_1621	-	peptidylprolyl isomerase
1559	 69.46	0	1676037..1676609	-	190	121593995	-	Ajs_1622	-	TPR repeat-containing protein
1560	 66.59	0	1676863..1678239	+	458	121593996	-	Ajs_1623	-	cysteinyl-tRNA synthetase
1561	 65.30	0	1678285..1678944	+	219	121593997	-	Ajs_1624	-	HhH-GPD family protein
1562	 63.91	0	1678993..1679970	+	325	121593998	-	Ajs_1625	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
1563	 69.35	0	1682059..1683066	+	335	121593999	-	Ajs_1627	-	tRNA(Ile)-lysidine synthetase
1564	 63.51	0	1683104..1684372	+	422	121594000	-	Ajs_1628	-	aspartate kinase
1565	 66.88	0	1684576..1685055	-	159	121594001	-	Ajs_1629	-	hypothetical protein
1566	 70.08	0	1685111..1687480	-	789	121594002	-	Ajs_1630	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1567	 70.32	0	1687578..1688507	+	309	121594003	-	Ajs_1631	-	LysR family transcriptional regulator
1568	 68.87	0	1688554..1689414	-	286	121594004	-	Ajs_1632	-	2,3-dimethylmalate lyase
1569	 71.82	+1	1689866..1691068	-	400	121594005	-	Ajs_1633	-	methylitaconate delta2-delta3-isomerase
1570	 69.85	0	1691082..1693754	-	890	121594006	acnA	Ajs_1634	-	aconitate hydratase
1571	 68.56	0	1693861..1695021	-	386	121594007	-	Ajs_1635	-	methylcitrate synthase
1572	 73.86	+1	1695018..1695434	-	138	121594008	-	Ajs_1636	-	thioesterase superfamily protein
1573	 73.12	+1	1695536..1697008	+	490	121594009	-	Ajs_1637	-	XRE family transcriptional regulator
1574	 67.33	0	1697145..1697447	+	100	121594010	-	Ajs_1638	-	hypothetical protein
1575	 72.30	+1	1697572..1697997	-	141	121594011	-	Ajs_1639	-	RNA-binding S4 domain-containing protein
1576	 70.37	0	1698038..1699441	-	467	121594012	-	Ajs_1640	-	integral membrane sensor signal transduction histidine kinase
1577	 69.54	0	1699614..1700345	-	243	121594013	-	Ajs_1641	-	two component transcriptional regulator
1578	 69.27	0	1700448..1701407	+	319	121594014	-	Ajs_1642	-	hypothetical protein
1579	 71.92	+1	1701541..1702092	+	183	121594015	-	Ajs_1643	-	hypothetical protein
1580	 67.65	0	1702183..1703712	+	509	121594016	-	Ajs_1644	-	hypothetical protein
1581	 64.01	0	1703940..1704278	+	112	121594017	-	Ajs_1645	-	hypothetical protein
1582	 70.76	0	1704238..1705116	+	292	121594018	-	Ajs_1646	-	alpha/beta hydrolase fold
1583	 67.40	0	1705279..1706238	+	319	121594019	-	Ajs_1647	-	rhodanese domain-containing protein
1584	 71.43	+1	1706309..1706476	-	55	121594020	-	Ajs_1648	-	hypothetical protein
1585	 69.76	0	1706496..1707593	-	365	121594021	-	Ajs_1649	-	protein of unknown function DUF395, YeeE/YedE
1586	 69.60	0	1707701..1708654	-	317	121594022	-	Ajs_1650	-	rhodanese domain-containing protein
1587	 69.12	0	1711239..1712297	-	352	121594023	-	Ajs_1652	-	ferrochelatase
1588	 70.27	0	1712337..1713029	+	230	121594024	-	Ajs_1653	-	HAD family hydrolase
1589	 70.39	0	1713042..1715780	-	912	121594025	-	Ajs_1654	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1590	 68.13	0	1716127..1716948	-	273	121594026	-	Ajs_1655	-	alpha/beta hydrolase fold
1591	 68.26	0	1716948..1718261	-	437	121594027	-	Ajs_1656	-	O-acetylhomoserine aminocarboxypropyltransferase
1592	 64.04	0	1718360..1718815	+	151	121594028	-	Ajs_1657	-	XRE family transcriptional regulator
1593	 67.03	0	1718909..1720009	+	366	121594029	-	Ajs_1658	-	chorismate synthase
1594	 62.67	0	1720086..1720535	-	149	121594030	-	Ajs_1659	-	transcriptional regulator NrdR
1595	 63.86	0	1720548..1721792	-	414	121594031	-	Ajs_1660	-	serine hydroxymethyltransferase
1596	 64.64	0	1722030..1722869	-	279	121594032	-	Ajs_1661	-	lytic transglycosylase, catalytic
1597	 63.62	0	1723588..1727295	+	1235	121594033	-	Ajs_1662	-	hypothetical protein
1598	 67.60	0	1727504..1730191	+	895	121594034	-	Ajs_1663	-	hypothetical protein
1599	 65.60	0	1730261..1730824	-	187	121594035	-	Ajs_1664	-	BadM/Rrf2 family transcriptional regulator
1600	 61.34	-1	1730969..1731475	-	168	121594036	-	Ajs_1665	-	hypothetical protein
1601	 63.39	0	1731547..1732371	+	274	121594037	-	Ajs_1666	-	N-formylglutamate amidohydrolase
1602	 63.98	0	1732389..1732649	+	86	121594038	-	Ajs_1667	-	hypothetical protein
1603	 63.04	0	1732680..1733561	-	293	121594039	-	Ajs_1668	-	phosphatidylserine decarboxylase
1604	 65.04	0	1733742..1734911	+	389	121594040	-	Ajs_1669	-	CBS domain-containing protein
1605	 61.80	0	1735148..1735414	+	88	121594041	-	Ajs_1670	-	translation initiation factor 1
1606	 58.75	-1	1735730..1736032	+	100	121594042	-	Ajs_1671	-	hypothetical protein
1607	 62.00	0	1736179..1736949	+	256	121594043	-	Ajs_1672	-	hypothetical protein
1608	 60.31	-1	1736999..1737784	-	261	121594044	-	Ajs_1673	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1609	 59.14	-1	1737852..1738130	-	92	121594045	-	Ajs_1674	-	transcriptional regulator BolA
1610	 60.25	-1	1738127..1738687	-	186	121594046	-	Ajs_1675	-	intracellular septation protein A
1611	 67.15	0	1738684..1739097	-	137	121594047	-	Ajs_1676	-	methionine-R-sulfoxide reductase
1612	 67.54	0	1739094..1740581	-	495	121594048	-	Ajs_1677	-	hypothetical protein
1613	 66.18	0	1740754..1742391	+	545	121594049	-	Ajs_1678	-	acyl-CoA synthetase
1614	 61.33	-1	1742529..1743764	+	411	121594050	-	Ajs_1679	-	extracellular ligand-binding receptor
1615	 64.47	0	1743840..1744793	+	317	121594051	-	Ajs_1680	-	inner-membrane translocator
1616	 65.10	0	1744800..1746137	+	445	121594052	-	Ajs_1681	-	inner-membrane translocator
1617	 65.39	0	1746137..1746919	+	260	121594053	-	Ajs_1682	-	ABC transporter related
1618	 64.80	0	1746923..1747618	+	231	121594054	-	Ajs_1683	-	ABC transporter related
1619	 66.38	0	1747811..1749910	+	699	121594055	-	Ajs_1684	-	short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
1620	 67.43	0	1749956..1751131	+	391	121594056	-	Ajs_1685	-	acetyl-CoA acetyltransferase
1621	 61.35	-1	1751473..1752657	+	394	121594057	-	Ajs_1686	-	diguanylate cyclase
1622	 66.98	0	1752727..1754655	+	642	121594058	-	Ajs_1687	-	acyl-CoA dehydrogenase domain-containing protein
1623	 72.65	+1	1754716..1755216	+	166	121594059	-	Ajs_1688	-	NAD(P)H dehydrogenase (quinone)
1624	 73.79	+1	1755644..1757215	-	523	121594060	-	Ajs_1689	-	phosphonate ABC transporter, inner membrane subunit
1625	 75.42	+1	1757206..1758039	-	277	121594061	-	Ajs_1690	-	ABC transporter related
1626	 67.45	0	1758161..1759051	-	296	121594062	-	Ajs_1691	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1627	 70.71	0	1759177..1760535	-	452	121594063	-	Ajs_1692	-	major facilitator superfamily transporter
1628	 69.14	0	1760620..1761753	-	377	121594064	-	Ajs_1693	-	extracellular ligand-binding receptor
1629	 68.81	0	1762987..1763778	+	263	121594065	-	Ajs_1695	-	gluconate 5-dehydrogenase
1630	 64.86	0	1763815..1764258	+	147	121594066	-	Ajs_1696	-	hypothetical protein
1631	 68.04	0	1764346..1765362	+	338	121594067	-	Ajs_1697	-	alcohol dehydrogenase
1632	 72.04	+1	1765359..1765823	+	154	121594068	-	Ajs_1698	-	GCN5-related N-acetyltransferase
1633	 69.47	0	1765872..1766798	+	308	121594069	-	Ajs_1699	-	putative glutathione S-transferase-related protein
1634	 70.53	0	1766833..1767738	+	301	121594070	-	Ajs_1700	-	hypothetical protein
1635	 76.06	+2	1767849..1768487	-	212	121594071	-	Ajs_1701	-	hypothetical protein
1636	 72.07	+1	1768719..1769957	+	412	121594072	-	Ajs_1702	-	Bcr/CflA subfamily drug resistance transporter
1637	 72.57	+1	1769954..1771360	+	468	121594073	-	Ajs_1703	-	major facilitator superfamily transporter
1638	 70.86	0	1771506..1772603	-	365	121594074	-	Ajs_1704	-	hypothetical protein
1639	 70.59	0	1772607..1773014	-	135	121594075	-	Ajs_1705	-	hypothetical protein
1640	 64.04	0	1773011..1774534	-	507	121594076	-	Ajs_1706	-	hypothetical protein
1641	 67.92	0	1774586..1776982	+	798	121594077	-	Ajs_1707	-	RNA-binding S1 domain-containing protein
1642	 71.15	0	1777055..1777879	+	274	121594078	-	Ajs_1708	-	putative signal transduction protein
1643	 70.51	0	1777908..1779053	+	381	121594079	-	Ajs_1709	-	hypothetical protein
1644	 71.21	+1	1779084..1780535	-	483	121594080	-	Ajs_1710	-	putative PAS/PAC sensor protein
1645	 70.27	0	1780640..1781776	-	378	121594081	-	Ajs_1711	-	iron-containing alcohol dehydrogenase
1646	 71.35	+1	1781839..1782714	+	291	121594082	-	Ajs_1712	-	hydratase/decarboxylase
1647	 72.12	+1	1782731..1783720	+	329	121594083	-	Ajs_1713	-	alpha/beta hydrolase domain-containing protein
1648	 68.87	0	1783742..1784605	+	287	121594084	-	Ajs_1714	-	thioesterase superfamily protein
1649	 70.51	0	1784665..1785600	-	311	121594085	-	Ajs_1715	-	glycine cleavage T protein (aminomethyl transferase)
1650	 70.16	0	1785646..1786647	+	333	121594086	-	Ajs_1716	-	aminodeoxychorismate lyase
1651	 69.27	0	1786644..1787297	+	217	121594087	-	Ajs_1717	-	thymidylate kinase
1652	 72.89	+1	1787294..1788289	+	331	121594088	-	Ajs_1718	-	DNA-directed DNA polymerase
1653	 65.83	0	1788306..1788665	+	119	121594089	-	Ajs_1719	-	type IV pilus assembly PilZ
1654	 67.16	0	1788739..1789548	+	269	121594090	-	Ajs_1720	-	TatD family hydrolase
1655	 71.03	0	1789545..1790231	+	228	121594091	-	Ajs_1721	-	ankyrin
1656	 67.00	0	1790355..1792139	-	594	121594092	-	Ajs_1722	-	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
1657	 63.81	0	1792252..1793583	+	443	121594093	-	Ajs_1723	-	TolB domain-containing protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.