IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1448	 69.24	0	1559208..1560371	-	387	121593884	-	Ajs_1505	-	peptidase S1 and S6, chymotrypsin/Hap
1449	 66.56	0	1560368..1561267	-	299	121593885	-	Ajs_1506	-	phosphoribosylpyrophosphate synthetase
1450	 70.12	0	1561264..1562799	-	511	121593886	-	Ajs_1507	-	thymidine phosphorylase
1451	 67.33	0	1562796..1564154	-	452	121593887	-	Ajs_1508	-	beta-lactamase domain-containing protein
1452	 65.86	0	1564180..1564677	-	165	121593888	-	Ajs_1509	-	hypothetical protein
1453	 70.88	0	1564680..1565558	-	292	121593889	-	Ajs_1510	-	hypothetical protein
1454	 64.55	0	1565555..1566169	-	204	121593890	-	Ajs_1511	-	LemA family protein
1455	 66.82	0	1566172..1567497	-	441	121593891	-	Ajs_1512	-	major facilitator superfamily transporter
1456	 65.97	0	1567547..1570000	-	817	121593892	-	Ajs_1513	-	heavy metal translocating P-type ATPase
1457	 61.70	-1	1570022..1570867	-	281	121593893	-	Ajs_1514	-	hypothetical protein
1458	 63.27	0	1572859..1573947	-	362	121593894	-	Ajs_1519	-	transposase, IS4 family protein
1459	 61.31	-1	1574583..1574918	+	111	121593895	-	Ajs_1521	-	hypothetical protein
1460	 63.64	0	1575551..1577734	-	727	121593896	-	Ajs_1523	-	TonB-dependent siderophore receptor
1461	 64.29	0	1578073..1580844	-	923	121593897	-	Ajs_1524	-	TraG domain-containing protein
1462	 63.08	0	1580866..1582314	-	482	121593898	-	Ajs_1525	-	TraH family protein
1463	 68.38	0	1582324..1583199	-	291	121593899	-	Ajs_1526	-	hypothetical protein
1464	 66.67	0	1583210..1583605	-	131	121593900	-	Ajs_1527	-	hypothetical protein
1465	 67.62	0	1583596..1586013	-	805	121593901	-	Ajs_1528	-	conjugal transfer mating pair stabilization protein TraN
1466	 72.78	+1	1586023..1586775	-	250	121593902	-	Ajs_1529	-	hypothetical protein
1467	 67.93	0	1586762..1587787	-	341	121593903	-	Ajs_1530	-	TraU family protein
1468	 67.61	0	1587784..1588422	-	212	121593904	-	Ajs_1531	-	membrane lipoprotein lipid attachment site
1469	 72.40	+1	1588419..1588802	-	127	121593905	-	Ajs_1532	-	hypothetical protein
1470	 67.01	0	1588814..1589398	-	194	121593906	-	Ajs_1533	-	hypothetical protein
1471	 71.43	+1	1589395..1589751	-	118	121593907	-	Ajs_1534	-	hypothetical protein
1472	 65.20	0	1589748..1592330	-	860	121593908	-	Ajs_1535	-	hypothetical protein
1473	 70.25	0	1592338..1592979	-	213	121593909	-	Ajs_1536	-	hypothetical protein
1474	 68.43	0	1592976..1593824	-	282	121593910	-	Ajs_1537	-	periplasmic thiol:disulfide interchange protein
1475	 70.26	0	1593808..1595226	-	472	121593911	-	Ajs_1538	-	TraB pilus assembly family protein
1476	 69.94	0	1595223..1596230	-	335	121593912	-	Ajs_1539	-	hypothetical protein
1477	 66.49	0	1596217..1596783	-	188	121593913	-	Ajs_1540	-	plasmid-like conjugative transfer protein TraE
1478	 67.67	0	1596798..1597097	-	99	121593914	-	Ajs_1541	-	TraL family protein
1479	 67.49	0	1597129..1597491	-	120	121593915	-	Ajs_1542	-	hypothetical protein
1480	 69.27	0	1597589..1598011	-	140	121593916	-	Ajs_1543	-	hypothetical protein
1481	 66.10	0	1598008..1598535	-	175	121593917	-	Ajs_1544	-	lytic transglycosylase, catalytic
1482	 65.26	0	1598677..1599174	-	165	121593918	-	Ajs_1545	-	hypothetical protein
1483	 60.19	-1	1599378..1599686	-	102	121593919	-	Ajs_1546	-	hypothetical protein
1484	 61.17	-1	1599827..1600099	+	90	121593920	-	Ajs_1547	-	helix-turn-helix domain-containing protein
1485	 61.86	0	1600115..1600738	-	207	121593921	-	Ajs_1548	-	hypothetical protein
1486	 66.19	0	1600735..1602636	-	633	121593922	-	Ajs_1549	-	hypothetical protein
1487	 66.28	0	1602638..1604431	-	597	121593923	-	Ajs_1550	-	FHA domain-containing protein
1488	 65.31	0	1604485..1605147	-	220	121593924	-	Ajs_1551	-	hypothetical protein
1489	 66.03	0	1605148..1605462	-	104	121593925	-	Ajs_1552	-	hypothetical protein
1490	 63.76	0	1605739..1606461	+	240	121593926	-	Ajs_1553	-	putative phage repressor
1491	 65.63	0	1606545..1607609	-	354	121593927	-	Ajs_1554	-	hypothetical protein
1492	 64.03	0	1607621..1607923	+	100	121593928	-	Ajs_1555	-	hypothetical protein
1493	 67.06	0	1607893..1608897	-	334	121593929	-	Ajs_1556	-	phage P4 alpha zinc-binding domain-containing protein
1494	 65.32	0	1608884..1610521	-	545	121593930	-	Ajs_1557	-	ATP-binding region, ATPase-like protein
1495	 68.14	0	1610588..1610926	-	112	121593931	-	Ajs_1558	-	hypothetical protein
1496	 64.86	0	1610923..1611144	-	73	121593932	-	Ajs_1559	-	hypothetical protein
1497	 65.29	0	1611178..1611759	-	193	121593933	-	Ajs_1560	-	hypothetical protein
1498	 64.89	0	1612250..1613035	+	261	121593934	-	Ajs_1561	-	hypothetical protein
1499	 62.92	0	1613465..1613704	+	79	121593935	-	Ajs_1562	-	phage transcriptional regulator, AlpA
1500	 57.00	-2	1613932..1615059	-	375	121593936	-	Ajs_1563	-	hypothetical protein
1501	 63.51	0	1615232..1616500	-	422	121593937	-	Ajs_1564	-	hypothetical protein
1502	 64.78	0	1616506..1617459	-	317	121593938	-	Ajs_1565	-	phage integrase family protein
1503	 66.43	0	1617751..1619034	+	427	121593939	-	Ajs_1566	-	hypothetical protein
1504	 70.49	0	1619046..1620326	+	426	121593940	-	Ajs_1567	-	metallophosphoesterase
1505	 64.60	0	1620424..1622751	-	775	121593941	-	Ajs_1568	-	hypothetical protein
1506	 66.56	0	1622792..1623757	-	321	121593942	-	Ajs_1569	-	hypothetical protein
1507	 66.42	0	1623754..1624155	-	133	121593943	-	Ajs_1570	-	hypothetical protein
1508	 67.19	0	1624371..1626839	+	822	121593944	-	Ajs_1571	-	putative ATPase involved in DNA repair
1509	 61.17	-1	1626891..1627199	-	102	121593945	-	Ajs_1572	-	hypothetical protein
1510	 61.03	-1	1627741..1627953	+	70	121593946	-	Ajs_1573	-	hypothetical protein
1511	 68.81	0	1628033..1628545	-	170	121593947	-	Ajs_1574	-	hypothetical protein
1512	 67.53	0	1628672..1628902	+	76	121593948	-	Ajs_1575	-	hypothetical protein
1513	 68.59	0	1628873..1629391	-	172	121593949	-	Ajs_1576	-	hypothetical protein
1514	 65.06	0	1629842..1630963	-	373	121593950	-	Ajs_1577	-	hypothetical protein
1515	 68.59	0	1631235..1636163	-	1642	121593951	-	Ajs_1578	-	helicase domain-containing protein
1516	 63.40	0	1636599..1636904	-	101	121593952	-	Ajs_1579	-	hypothetical protein
1517	 65.48	0	1637058..1637729	-	223	121593953	-	Ajs_1580	-	hypothetical protein
1518	 65.94	0	1637835..1638521	-	228	121593954	-	Ajs_1581	-	hypothetical protein
1519	 68.00	0	1638930..1639604	+	224	121593955	-	Ajs_1582	-	hypothetical protein
1520	 65.90	0	1639601..1640248	+	215	121593956	-	Ajs_1583	-	hypothetical protein
1521	 61.24	-1	1640335..1641957	+	540	121593957	-	Ajs_1584	-	putative EA59 gene protein, phage lambda
1522	 63.00	0	1641959..1642804	+	281	121593958	-	Ajs_1585	-	putative EA31 gene protein, phage lambda
1523	 65.20	0	1643095..1643709	+	204	121593959	-	Ajs_1586	-	hypothetical protein
1524	 65.27	0	1644072..1644572	+	166	121593960	-	Ajs_1587	-	DNA binding domain-containing protein
1525	 62.76	0	1644569..1645183	+	204	121593961	-	Ajs_1588	-	hypothetical protein
1526	 62.59	0	1645266..1645805	-	179	121593962	-	Ajs_1589	-	histone family protein DNA-binding protein
1527	 65.87	0	1645904..1646404	+	166	121593963	-	Ajs_1590	-	hypothetical protein
1528	 68.76	0	1646489..1648252	+	587	121593964	-	Ajs_1591	-	ParB family protein
1529	 67.08	0	1648351..1648833	+	160	121593965	-	Ajs_1592	-	hypothetical protein
1530	 69.59	0	1648929..1649372	+	147	121593966	-	Ajs_1593	-	hypothetical protein
1531	 67.43	0	1649384..1650433	+	349	121593967	-	Ajs_1594	-	hypothetical protein
1532	 68.02	0	1650463..1651203	+	246	121593968	-	Ajs_1595	-	hypothetical protein
1533	 69.46	0	1651200..1651916	+	238	121593969	-	Ajs_1596	-	hypothetical protein
1534	 65.50	0	1651970..1652824	+	284	121593970	-	Ajs_1597	-	UBA/THIF-type NAD/FAD binding protein
1535	 61.58	-1	1653122..1653475	+	117	121593971	-	Ajs_1598	-	nucleoid protein H-NS
1536	 66.05	0	1653480..1654610	-	376	121593972	-	Ajs_1599	-	hypothetical protein
1537	 64.15	0	1655811..1656842	+	343	121593973	-	Ajs_1600	-	hypothetical protein
1538	 64.49	0	1656839..1657114	+	91	121593974	-	Ajs_1601	-	hypothetical protein
1539	 63.98	0	1657122..1657568	+	148	121593975	-	Ajs_1602	-	hypothetical protein
1540	 60.99	-1	1657565..1658110	+	181	121593976	-	Ajs_1603	-	hypothetical protein
1541	 58.19	-1	1658441..1659820	+	459	121593977	-	Ajs_1604	-	phage integrase family protein
1542	 69.84	0	1660458..1660709	+	83	121593978	-	Ajs_1605	-	hypothetical protein
1543	 65.74	0	1660811..1661569	-	252	121593979	-	Ajs_1606	-	short-chain dehydrogenase/reductase SDR
1544	 62.48	0	1661682..1662731	-	349	121593980	-	Ajs_1607	-	extracellular solute-binding protein
1545	 65.09	0	1662915..1664756	-	613	121593981	-	Ajs_1608	-	glutaminyl-tRNA synthetase
1546	 69.49	0	1664969..1665322	+	117	121593982	-	Ajs_1609	-	hypothetical protein
1547	 65.10	0	1665406..1665852	+	148	121593983	-	Ajs_1610	-	3-dehydroquinate dehydratase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.