IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1411	 61.80	0	1517557..1517823	+	88	121593847	-	Ajs_1457	-	transposase IS3/IS911 family protein
1412	 57.70	-1	1518853..1519833	-	326	121593848	-	Ajs_1459	-	transposase, IS4 family protein
1413	 53.03	-2	1519984..1521369	-	461	121593849	-	Ajs_1460	-	heavy metal sensor signal transduction histidine kinase
1414	 58.63	-1	1521370..1522053	-	227	121593850	-	Ajs_1461	-	two component heavy metal response transcriptional regulator
1415	 53.62	-2	1522384..1522728	+	114	121593851	-	Ajs_1463	-	hypothetical protein
1416	 57.81	-1	1522818..1523291	+	157	121593852	-	Ajs_1464	-	hypothetical protein
1417	 58.25	-1	1523317..1523601	+	94	121593853	-	Ajs_1465	-	hypothetical protein
1418	 54.56	-2	1523598..1524266	+	222	121593854	-	Ajs_1466	-	isoprenylcysteine carboxyl methyltransferase
1419	 64.29	0	1524318..1524611	+	97	121593855	-	Ajs_1467	-	heavy metal transport/detoxification protein
1420	 63.05	0	1524696..1524944	+	82	121593856	-	Ajs_1468	-	hypothetical protein
1421	 59.98	-1	1524948..1527281	+	777	121593857	-	Ajs_1469	-	heavy metal translocating P-type ATPase
1422	 58.29	-1	1527302..1529140	+	612	121593858	-	Ajs_1470	-	hypothetical protein
1423	 59.79	-1	1529246..1530292	+	348	121593859	-	Ajs_1471	-	YVTN beta-propeller repeat-containing protein
1424	 53.33	-2	1530373..1530957	+	194	121593860	-	Ajs_1472	-	hypothetical protein
1425	 60.71	-1	1531200..1531535	-	111	121593861	-	Ajs_1473	-	hypothetical protein
1426	 63.24	0	1531538..1531945	-	135	121593862	-	Ajs_1474	-	MerR family transcriptional regulator
1427	 61.02	-1	1531988..1532359	+	123	121593863	-	Ajs_1475	-	putative mercuric transport protein
1428	 60.35	-1	1532372..1532656	+	94	121593864	-	Ajs_1476	-	mercuric transport protein periplasmic component
1429	 56.41	-2	1533181..1533336	+	51	121593865	-	Ajs_1478	-	hypothetical protein
1430	 63.53	0	1533369..1534613	+	414	121593866	-	Ajs_1479	-	membrane protein-like protein
1431	 59.04	-1	1534671..1534919	+	82	121593867	-	Ajs_1480	-	hypothetical protein
1432	 59.84	-1	1534916..1536190	+	424	121593868	-	Ajs_1481	-	outer membrane efflux protein
1433	 60.41	-1	1536187..1537800	+	537	121593869	-	Ajs_1482	-	RND family efflux transporter MFP subunit
1434	 59.07	-1	1537816..1540947	+	1043	121593870	-	Ajs_1483	-	CzcA family heavy metal efflux protein
1435	 54.69	-2	1541727..1542035	-	102	121593871	-	Ajs_1485	-	flagellar hook-basal body complex subunit FliE
1436	 63.82	0	1542464..1543726	+	420	121593872	-	Ajs_1486	-	hypothetical protein
1437	 64.91	0	1543726..1544067	+	113	121593873	-	Ajs_1487	-	hypothetical protein
1438	 53.57	-2	1545501..1545752	+	83	121593874	-	Ajs_1490	-	hypothetical protein
1439	 60.00	-1	1545867..1546181	+	104	121593875	-	Ajs_1491	-	hypothetical protein
1440	 61.49	-1	1546198..1546506	+	102	121593876	-	Ajs_1492	-	heavy metal transport/detoxification protein
1441	 64.62	0	1546523..1547206	+	227	121593877	-	Ajs_1493	-	hypothetical protein
1442	 63.75	0	1547678..1548946	+	422	121593878	-	Ajs_1494	-	cyclopropane-fatty-acyl-phospholipid synthase
1443	 63.78	0	1549187..1551094	+	635	121593879	-	Ajs_1495	-	FtsH-2 peptidase
1444	 69.22	0	1551569..1553995	+	808	121593880	-	Ajs_1497	-	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
1445	 67.22	0	1554548..1556170	-	540	121593881	-	Ajs_1499	-	hypothetical protein
1446	 62.17	0	1556335..1556979	-	214	121593882	-	Ajs_1500	-	hypothetical protein
1447	 66.50	0	1558602..1559198	-	198	121593883	-	Ajs_1504	-	hypothetical protein
1448	 69.24	0	1559208..1560371	-	387	121593884	-	Ajs_1505	-	peptidase S1 and S6, chymotrypsin/Hap
1449	 66.56	0	1560368..1561267	-	299	121593885	-	Ajs_1506	-	phosphoribosylpyrophosphate synthetase
1450	 70.12	0	1561264..1562799	-	511	121593886	-	Ajs_1507	-	thymidine phosphorylase
1451	 67.33	0	1562796..1564154	-	452	121593887	-	Ajs_1508	-	beta-lactamase domain-containing protein
1452	 65.86	0	1564180..1564677	-	165	121593888	-	Ajs_1509	-	hypothetical protein
1453	 70.88	0	1564680..1565558	-	292	121593889	-	Ajs_1510	-	hypothetical protein
1454	 64.55	0	1565555..1566169	-	204	121593890	-	Ajs_1511	-	LemA family protein
1455	 66.82	0	1566172..1567497	-	441	121593891	-	Ajs_1512	-	major facilitator superfamily transporter
1456	 65.97	0	1567547..1570000	-	817	121593892	-	Ajs_1513	-	heavy metal translocating P-type ATPase
1457	 61.70	-1	1570022..1570867	-	281	121593893	-	Ajs_1514	-	hypothetical protein
1458	 63.27	0	1572859..1573947	-	362	121593894	-	Ajs_1519	-	transposase, IS4 family protein
1459	 61.31	-1	1574583..1574918	+	111	121593895	-	Ajs_1521	-	hypothetical protein
1460	 63.64	0	1575551..1577734	-	727	121593896	-	Ajs_1523	-	TonB-dependent siderophore receptor
1461	 64.29	0	1578073..1580844	-	923	121593897	-	Ajs_1524	-	TraG domain-containing protein
1462	 63.08	0	1580866..1582314	-	482	121593898	-	Ajs_1525	-	TraH family protein
1463	 68.38	0	1582324..1583199	-	291	121593899	-	Ajs_1526	-	hypothetical protein
1464	 66.67	0	1583210..1583605	-	131	121593900	-	Ajs_1527	-	hypothetical protein
1465	 67.62	0	1583596..1586013	-	805	121593901	-	Ajs_1528	-	conjugal transfer mating pair stabilization protein TraN
1466	 72.78	+1	1586023..1586775	-	250	121593902	-	Ajs_1529	-	hypothetical protein
1467	 67.93	0	1586762..1587787	-	341	121593903	-	Ajs_1530	-	TraU family protein
1468	 67.61	0	1587784..1588422	-	212	121593904	-	Ajs_1531	-	membrane lipoprotein lipid attachment site
1469	 72.40	+1	1588419..1588802	-	127	121593905	-	Ajs_1532	-	hypothetical protein
1470	 67.01	0	1588814..1589398	-	194	121593906	-	Ajs_1533	-	hypothetical protein
1471	 71.43	+1	1589395..1589751	-	118	121593907	-	Ajs_1534	-	hypothetical protein
1472	 65.20	0	1589748..1592330	-	860	121593908	-	Ajs_1535	-	hypothetical protein
1473	 70.25	0	1592338..1592979	-	213	121593909	-	Ajs_1536	-	hypothetical protein
1474	 68.43	0	1592976..1593824	-	282	121593910	-	Ajs_1537	-	periplasmic thiol:disulfide interchange protein
1475	 70.26	0	1593808..1595226	-	472	121593911	-	Ajs_1538	-	TraB pilus assembly family protein
1476	 69.94	0	1595223..1596230	-	335	121593912	-	Ajs_1539	-	hypothetical protein
1477	 66.49	0	1596217..1596783	-	188	121593913	-	Ajs_1540	-	plasmid-like conjugative transfer protein TraE
1478	 67.67	0	1596798..1597097	-	99	121593914	-	Ajs_1541	-	TraL family protein
1479	 67.49	0	1597129..1597491	-	120	121593915	-	Ajs_1542	-	hypothetical protein
1480	 69.27	0	1597589..1598011	-	140	121593916	-	Ajs_1543	-	hypothetical protein
1481	 66.10	0	1598008..1598535	-	175	121593917	-	Ajs_1544	-	lytic transglycosylase, catalytic
1482	 65.26	0	1598677..1599174	-	165	121593918	-	Ajs_1545	-	hypothetical protein
1483	 60.19	-1	1599378..1599686	-	102	121593919	-	Ajs_1546	-	hypothetical protein
1484	 61.17	-1	1599827..1600099	+	90	121593920	-	Ajs_1547	-	helix-turn-helix domain-containing protein
1485	 61.86	0	1600115..1600738	-	207	121593921	-	Ajs_1548	-	hypothetical protein
1486	 66.19	0	1600735..1602636	-	633	121593922	-	Ajs_1549	-	hypothetical protein
1487	 66.28	0	1602638..1604431	-	597	121593923	-	Ajs_1550	-	FHA domain-containing protein
1488	 65.31	0	1604485..1605147	-	220	121593924	-	Ajs_1551	-	hypothetical protein
1489	 66.03	0	1605148..1605462	-	104	121593925	-	Ajs_1552	-	hypothetical protein
1490	 63.76	0	1605739..1606461	+	240	121593926	-	Ajs_1553	-	putative phage repressor
1491	 65.63	0	1606545..1607609	-	354	121593927	-	Ajs_1554	-	hypothetical protein
1492	 64.03	0	1607621..1607923	+	100	121593928	-	Ajs_1555	-	hypothetical protein
1493	 67.06	0	1607893..1608897	-	334	121593929	-	Ajs_1556	-	phage P4 alpha zinc-binding domain-containing protein
1494	 65.32	0	1608884..1610521	-	545	121593930	-	Ajs_1557	-	ATP-binding region, ATPase-like protein
1495	 68.14	0	1610588..1610926	-	112	121593931	-	Ajs_1558	-	hypothetical protein
1496	 64.86	0	1610923..1611144	-	73	121593932	-	Ajs_1559	-	hypothetical protein
1497	 65.29	0	1611178..1611759	-	193	121593933	-	Ajs_1560	-	hypothetical protein
1498	 64.89	0	1612250..1613035	+	261	121593934	-	Ajs_1561	-	hypothetical protein
1499	 62.92	0	1613465..1613704	+	79	121593935	-	Ajs_1562	-	phage transcriptional regulator, AlpA
1500	 57.00	-2	1613932..1615059	-	375	121593936	-	Ajs_1563	-	hypothetical protein
1501	 63.51	0	1615232..1616500	-	422	121593937	-	Ajs_1564	-	hypothetical protein
1502	 64.78	0	1616506..1617459	-	317	121593938	-	Ajs_1565	-	phage integrase family protein
1503	 66.43	0	1617751..1619034	+	427	121593939	-	Ajs_1566	-	hypothetical protein
1504	 70.49	0	1619046..1620326	+	426	121593940	-	Ajs_1567	-	metallophosphoesterase
1505	 64.60	0	1620424..1622751	-	775	121593941	-	Ajs_1568	-	hypothetical protein
1506	 66.56	0	1622792..1623757	-	321	121593942	-	Ajs_1569	-	hypothetical protein
1507	 66.42	0	1623754..1624155	-	133	121593943	-	Ajs_1570	-	hypothetical protein
1508	 67.19	0	1624371..1626839	+	822	121593944	-	Ajs_1571	-	putative ATPase involved in DNA repair
1509	 61.17	-1	1626891..1627199	-	102	121593945	-	Ajs_1572	-	hypothetical protein
1510	 61.03	-1	1627741..1627953	+	70	121593946	-	Ajs_1573	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.