IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1372	 70.33	0	1477941..1478540	-	199	121593808	-	Ajs_1413	-	putative secreted protein
1373	 62.99	0	1478729..1479817	-	362	121593809	-	Ajs_1414	-	hypothetical protein
1374	 62.91	0	1479834..1481960	-	708	121593810	-	Ajs_1415	-	cytochrome c, class I
1375	 62.30	0	1482357..1483043	-	228	121593811	-	Ajs_1416	-	hypothetical protein
1376	 64.34	0	1483155..1485434	-	759	121593812	-	Ajs_1417	-	helicase domain-containing protein
1377	 63.07	0	1485571..1485876	-	101	121593813	-	Ajs_1418	-	hypothetical protein
1378	 61.06	-1	1485966..1486286	-	106	121593814	-	Ajs_1419	-	hypothetical protein
1379	 65.01	0	1486337..1487485	-	382	121593815	-	Ajs_1420	-	hypothetical protein
1380	 66.67	0	1487511..1488158	-	215	121593816	-	Ajs_1421	-	hypothetical protein
1381	 66.98	0	1488439..1489401	+	320	121593817	-	Ajs_1423	-	transposase IS116/IS110/IS902 family protein
1382	 59.77	-1	1489418..1489678	-	86	121593818	-	Ajs_1424	-	hypothetical protein
1383	 64.95	0	1489695..1490102	-	135	121593819	-	Ajs_1425	-	hypothetical protein
1384	 62.28	0	1490209..1490550	-	113	121593820	-	Ajs_1426	-	hypothetical protein
1385	 67.39	0	1492681..1493922	+	413	121593821	-	Ajs_1429	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1386	 57.69	-1	1493881..1494270	-	129	121593822	-	Ajs_1430	-	SwissProt accession number P19593-like protein
1387	 63.27	0	1494669..1495757	-	362	121593823	-	Ajs_1431	-	transposase, IS4 family protein
1388	 58.90	-1	1496191..1496409	-	72	121593824	-	Ajs_1433	-	hypothetical protein
1389	 65.58	0	1496467..1497384	-	305	121593825	-	Ajs_1434	-	hypothetical protein
1390	 64.41	0	1497750..1498103	-	117	121593826	-	Ajs_1435	-	hypothetical protein
1391	 63.51	0	1498183..1498404	-	73	121593827	-	Ajs_1436	-	hypothetical protein
1392	 65.07	0	1498401..1499213	-	270	121593828	-	Ajs_1437	-	hypothetical protein
1393	 59.14	-1	1499496..1499774	-	92	121593829	-	Ajs_1438	-	hypothetical protein
1394	 63.01	0	1499872..1500609	-	245	121593830	-	Ajs_1439	-	hypothetical protein
1395	 62.01	0	1500689..1501375	-	228	121593831	-	Ajs_1440	-	hypothetical protein
1396	 62.09	0	1501521..1501913	-	130	121593832	-	Ajs_1441	-	hypothetical protein
1397	 64.30	0	1502490..1503248	-	252	121593833	-	Ajs_1443	-	hypothetical protein
1398	 68.89	0	1503291..1504910	-	539	121593834	-	Ajs_1444	-	C-5 cytosine-specific DNA methylase
1399	 67.41	0	1505436..1507448	-	670	121593835	-	Ajs_1445	-	DNA topoisomerase III
1400	 66.00	0	1507725..1508177	-	150	121593836	-	Ajs_1446	-	single-strand DNA-binding protein
1401	 66.10	0	1508251..1508778	-	175	121593837	-	Ajs_1447	-	putative integrase regulator R protein
1402	 66.42	0	1508775..1509569	-	264	121593838	-	Ajs_1448	-	hypothetical protein
1403	 67.48	0	1510000..1511235	-	411	121593839	-	Ajs_1449	-	hypothetical protein
1404	 63.99	0	1511238..1511798	-	186	121593840	-	Ajs_1450	-	hypothetical protein
1405	 67.81	0	1511814..1513469	-	551	121593841	-	Ajs_1451	-	hypothetical protein
1406	 68.27	0	1513462..1513710	-	82	121593842	-	Ajs_1452	-	hypothetical protein
1407	 68.49	0	1513694..1514569	-	291	121593843	-	Ajs_1453	-	cobyrinic acid a,c-diamide synthase
1408	 62.91	0	1514612..1514824	-	70	121593844	-	Ajs_1454	-	phage transcriptional regulator, AlpA
1409	 63.89	0	1514943..1515698	-	251	121593845	-	Ajs_1455	-	hypothetical protein
1410	 56.25	-2	1517148..1517435	-	95	121593846	-	Ajs_1456	-	hypothetical protein
1411	 61.80	0	1517557..1517823	+	88	121593847	-	Ajs_1457	-	transposase IS3/IS911 family protein
1412	 57.70	-1	1518853..1519833	-	326	121593848	-	Ajs_1459	-	transposase, IS4 family protein
1413	 53.03	-2	1519984..1521369	-	461	121593849	-	Ajs_1460	-	heavy metal sensor signal transduction histidine kinase
1414	 58.63	-1	1521370..1522053	-	227	121593850	-	Ajs_1461	-	two component heavy metal response transcriptional regulator
1415	 53.62	-2	1522384..1522728	+	114	121593851	-	Ajs_1463	-	hypothetical protein
1416	 57.81	-1	1522818..1523291	+	157	121593852	-	Ajs_1464	-	hypothetical protein
1417	 58.25	-1	1523317..1523601	+	94	121593853	-	Ajs_1465	-	hypothetical protein
1418	 54.56	-2	1523598..1524266	+	222	121593854	-	Ajs_1466	-	isoprenylcysteine carboxyl methyltransferase
1419	 64.29	0	1524318..1524611	+	97	121593855	-	Ajs_1467	-	heavy metal transport/detoxification protein
1420	 63.05	0	1524696..1524944	+	82	121593856	-	Ajs_1468	-	hypothetical protein
1421	 59.98	-1	1524948..1527281	+	777	121593857	-	Ajs_1469	-	heavy metal translocating P-type ATPase
1422	 58.29	-1	1527302..1529140	+	612	121593858	-	Ajs_1470	-	hypothetical protein
1423	 59.79	-1	1529246..1530292	+	348	121593859	-	Ajs_1471	-	YVTN beta-propeller repeat-containing protein
1424	 53.33	-2	1530373..1530957	+	194	121593860	-	Ajs_1472	-	hypothetical protein
1425	 60.71	-1	1531200..1531535	-	111	121593861	-	Ajs_1473	-	hypothetical protein
1426	 63.24	0	1531538..1531945	-	135	121593862	-	Ajs_1474	-	MerR family transcriptional regulator
1427	 61.02	-1	1531988..1532359	+	123	121593863	-	Ajs_1475	-	putative mercuric transport protein
1428	 60.35	-1	1532372..1532656	+	94	121593864	-	Ajs_1476	-	mercuric transport protein periplasmic component
1429	 56.41	-2	1533181..1533336	+	51	121593865	-	Ajs_1478	-	hypothetical protein
1430	 63.53	0	1533369..1534613	+	414	121593866	-	Ajs_1479	-	membrane protein-like protein
1431	 59.04	-1	1534671..1534919	+	82	121593867	-	Ajs_1480	-	hypothetical protein
1432	 59.84	-1	1534916..1536190	+	424	121593868	-	Ajs_1481	-	outer membrane efflux protein
1433	 60.41	-1	1536187..1537800	+	537	121593869	-	Ajs_1482	-	RND family efflux transporter MFP subunit
1434	 59.07	-1	1537816..1540947	+	1043	121593870	-	Ajs_1483	-	CzcA family heavy metal efflux protein
1435	 54.69	-2	1541727..1542035	-	102	121593871	-	Ajs_1485	-	flagellar hook-basal body complex subunit FliE
1436	 63.82	0	1542464..1543726	+	420	121593872	-	Ajs_1486	-	hypothetical protein
1437	 64.91	0	1543726..1544067	+	113	121593873	-	Ajs_1487	-	hypothetical protein
1438	 53.57	-2	1545501..1545752	+	83	121593874	-	Ajs_1490	-	hypothetical protein
1439	 60.00	-1	1545867..1546181	+	104	121593875	-	Ajs_1491	-	hypothetical protein
1440	 61.49	-1	1546198..1546506	+	102	121593876	-	Ajs_1492	-	heavy metal transport/detoxification protein
1441	 64.62	0	1546523..1547206	+	227	121593877	-	Ajs_1493	-	hypothetical protein
1442	 63.75	0	1547678..1548946	+	422	121593878	-	Ajs_1494	-	cyclopropane-fatty-acyl-phospholipid synthase
1443	 63.78	0	1549187..1551094	+	635	121593879	-	Ajs_1495	-	FtsH-2 peptidase
1444	 69.22	0	1551569..1553995	+	808	121593880	-	Ajs_1497	-	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
1445	 67.22	0	1554548..1556170	-	540	121593881	-	Ajs_1499	-	hypothetical protein
1446	 62.17	0	1556335..1556979	-	214	121593882	-	Ajs_1500	-	hypothetical protein
1447	 66.50	0	1558602..1559198	-	198	121593883	-	Ajs_1504	-	hypothetical protein
1448	 69.24	0	1559208..1560371	-	387	121593884	-	Ajs_1505	-	peptidase S1 and S6, chymotrypsin/Hap
1449	 66.56	0	1560368..1561267	-	299	121593885	-	Ajs_1506	-	phosphoribosylpyrophosphate synthetase
1450	 70.12	0	1561264..1562799	-	511	121593886	-	Ajs_1507	-	thymidine phosphorylase
1451	 67.33	0	1562796..1564154	-	452	121593887	-	Ajs_1508	-	beta-lactamase domain-containing protein
1452	 65.86	0	1564180..1564677	-	165	121593888	-	Ajs_1509	-	hypothetical protein
1453	 70.88	0	1564680..1565558	-	292	121593889	-	Ajs_1510	-	hypothetical protein
1454	 64.55	0	1565555..1566169	-	204	121593890	-	Ajs_1511	-	LemA family protein
1455	 66.82	0	1566172..1567497	-	441	121593891	-	Ajs_1512	-	major facilitator superfamily transporter
1456	 65.97	0	1567547..1570000	-	817	121593892	-	Ajs_1513	-	heavy metal translocating P-type ATPase
1457	 61.70	-1	1570022..1570867	-	281	121593893	-	Ajs_1514	-	hypothetical protein
1458	 63.27	0	1572859..1573947	-	362	121593894	-	Ajs_1519	-	transposase, IS4 family protein
1459	 61.31	-1	1574583..1574918	+	111	121593895	-	Ajs_1521	-	hypothetical protein
1460	 63.64	0	1575551..1577734	-	727	121593896	-	Ajs_1523	-	TonB-dependent siderophore receptor
1461	 64.29	0	1578073..1580844	-	923	121593897	-	Ajs_1524	-	TraG domain-containing protein
1462	 63.08	0	1580866..1582314	-	482	121593898	-	Ajs_1525	-	TraH family protein
1463	 68.38	0	1582324..1583199	-	291	121593899	-	Ajs_1526	-	hypothetical protein
1464	 66.67	0	1583210..1583605	-	131	121593900	-	Ajs_1527	-	hypothetical protein
1465	 67.62	0	1583596..1586013	-	805	121593901	-	Ajs_1528	-	conjugal transfer mating pair stabilization protein TraN
1466	 72.78	+1	1586023..1586775	-	250	121593902	-	Ajs_1529	-	hypothetical protein
1467	 67.93	0	1586762..1587787	-	341	121593903	-	Ajs_1530	-	TraU family protein
1468	 67.61	0	1587784..1588422	-	212	121593904	-	Ajs_1531	-	membrane lipoprotein lipid attachment site
1469	 72.40	+1	1588419..1588802	-	127	121593905	-	Ajs_1532	-	hypothetical protein
1470	 67.01	0	1588814..1589398	-	194	121593906	-	Ajs_1533	-	hypothetical protein
1471	 71.43	+1	1589395..1589751	-	118	121593907	-	Ajs_1534	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.