IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1125	 68.81	0	1210396..1211283	-	295	121593561	-	Ajs_1148	-	response regulator receiver protein
1126	 66.98	0	1211304..1212266	+	320	121593562	-	Ajs_1149	-	transposase IS116/IS110/IS902 family protein
1127	 68.84	0	1212369..1213472	-	367	121593563	-	Ajs_1150	-	histidine kinase internal region
1128	 72.27	+1	1213516..1213836	-	106	121593564	-	Ajs_1151	-	hypothetical protein
1129	 65.82	0	1214068..1214892	+	274	121593565	-	Ajs_1152	-	undecaprenyl-diphosphatase
1130	 69.35	0	1214898..1216688	-	596	121593566	-	Ajs_1153	-	diguanylate cyclase
1131	 69.73	0	1216797..1217612	-	271	121593567	-	Ajs_1154	-	alpha/beta hydrolase fold
1132	 65.70	0	1217621..1218448	-	275	121593568	-	Ajs_1155	-	20S proteasome, A and B subunits
1133	 71.90	+1	1221339..1222943	-	534	121593569	-	Ajs_1157	-	alkaline phosphatase
1134	 67.26	0	1222958..1224481	-	507	121593570	-	Ajs_1158	-	diguanylate cyclase
1135	 65.74	0	1224575..1225549	-	324	121593571	-	Ajs_1159	-	alcohol dehydrogenase
1136	 61.80	0	1225626..1226468	+	280	121593572	-	Ajs_1160	-	5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase
1137	 66.67	0	1226468..1227238	+	256	121593573	-	Ajs_1161	-	protein-L-isoaspartate O-methyltransferase
1138	 65.24	0	1227250..1228161	+	303	121593574	-	Ajs_1162	-	peptidase M23B
1139	 64.78	0	1228176..1229180	+	334	121593575	-	Ajs_1163	-	ribosomal large subunit pseudouridine synthase D
1140	 60.00	-1	1229331..1230035	+	234	121593576	-	Ajs_1164	-	condensin subunit ScpB
1141	 64.29	0	1230032..1231375	+	447	121593577	-	Ajs_1165	-	ribosomal large subunit pseudouridine synthase B
1142	 62.21	0	1231452..1231877	+	141	121593578	-	Ajs_1166	-	nucleoside diphosphate kinase
1143	 60.71	-1	1231962..1233086	+	374	121593579	-	Ajs_1167	-	radical SAM protein
1144	 63.29	0	1233118..1233945	+	275	121593580	-	Ajs_1168	-	type IV pilus biogenesis/stability protein PilW
1145	 66.77	0	1233980..1234906	+	308	121593581	-	Ajs_1169	-	hypothetical protein
1146	 65.57	0	1234907..1236184	+	425	121593582	ispG	Ajs_1170	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1147	 66.59	0	1236282..1237571	+	429	121593583	-	Ajs_1171	-	histidyl-tRNA synthetase
1148	 64.16	0	1237585..1238262	+	225	121593584	-	Ajs_1172	-	hypothetical protein
1149	 68.40	0	1238259..1239410	+	383	121593585	-	Ajs_1173	-	Pyrrolo-quinoline quinone
1150	 60.71	-1	1239430..1240773	+	447	121593586	-	Ajs_1174	-	small GTP-binding protein
1151	 54.76	-2	1240851..1241102	+	83	121593587	-	Ajs_1175	-	RNA chaperone Hfq
1152	 60.14	-1	1241166..1242344	+	392	121593588	-	Ajs_1176	-	small GTP-binding protein
1153	 61.21	-1	1242396..1243751	+	451	121593589	-	Ajs_1177	-	HflK protein
1154	 58.17	-1	1243761..1244666	+	301	121593590	-	Ajs_1178	-	HflC protein
1155	 60.56	-1	1244696..1244875	+	59	121593591	-	Ajs_1179	-	hypothetical protein
1156	 60.49	-1	1244951..1246099	+	382	121593592	-	Ajs_1180	-	tRNA synthetase, class II (G, H, P and S)
1157	 59.48	-1	1246129..1247505	+	458	121593593	-	Ajs_1181	-	adenylosuccinate synthetase
1158	 54.10	-2	1247577..1248101	+	174	121593594	-	Ajs_1182	-	phosphoribosyltransferase
1159	 58.54	-1	1253890..1254627	+	245	121593595	-	Ajs_1183	-	ribosomal small subunit pseudouridine synthase A
1160	 62.67	0	1254787..1255761	+	324	121593596	-	Ajs_1184	-	hypothetical protein
1161	 64.64	0	1255748..1256587	+	279	121593597	-	Ajs_1185	-	polysaccharide deacetylase
1162	 65.27	0	1256638..1257636	+	332	121593598	-	Ajs_1186	-	hypothetical protein
1163	 64.89	0	1257652..1258554	+	300	121593599	-	Ajs_1187	-	putative transmembrane protein
1164	 65.09	0	1258551..1259372	+	273	121593600	-	Ajs_1188	-	molybdopterin binding domain-containing protein
1165	 63.63	0	1259529..1260944	+	471	121593601	-	Ajs_1189	-	L-glutamine synthetase
1166	 68.85	0	1261151..1261654	+	167	121593602	-	Ajs_1190	-	putative signal peptide protein
1167	 68.41	0	1261671..1262759	+	362	121593603	-	Ajs_1191	-	signal transduction histidine kinase, nitrogen specific, NtrB
1168	 70.25	0	1262811..1264346	+	511	121593604	-	Ajs_1192	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
1169	 70.96	0	1264528..1265481	+	317	121593605	-	Ajs_1193	-	hypothetical protein
1170	 66.54	0	1265522..1266298	-	258	121593606	-	Ajs_1194	-	exodeoxyribonuclease III Xth
1171	 70.71	0	1266369..1266863	-	164	121593607	-	Ajs_1195	-	dihydrofolate reductase
1172	 39.80	-2	1266866..1267561	-	231	121593608	-	Ajs_1196	-	hypothetical protein
1173	 64.87	0	1267599..1268432	-	277	121593609	-	Ajs_1197	-	thymidylate synthase
1174	 68.49	0	1268485..1269909	-	474	121593610	-	Ajs_1198	-	FAD linked oxidase domain-containing protein
1175	 74.34	+1	1269951..1270367	-	138	121593611	-	Ajs_1199	-	membrane protein-like protein
1176	 70.00	0	1270389..1271678	+	429	121593612	-	Ajs_1200	-	putative ribonuclease BN
1177	 75.86	+1	1271703..1273007	-	434	121593613	-	Ajs_1201	-	amine oxidase
1178	 66.55	0	1273004..1273843	-	279	121593614	-	Ajs_1202	-	farnesyl-diphosphate farnesyltransferase
1179	 66.11	0	1273991..1274881	+	296	121593615	-	Ajs_1203	-	metallophosphoesterase
1180	 70.18	0	1274887..1276053	+	388	121593616	-	Ajs_1204	-	monogalactosyldiacylglycerol synthase
1181	 73.74	+1	1276139..1277029	-	296	121593617	-	Ajs_1205	-	squalene/phytoene synthase
1182	 73.58	+1	1277117..1278274	+	385	121593618	-	Ajs_1206	-	RND family efflux transporter MFP subunit
1183	 67.24	0	1278381..1281530	+	1049	121593619	-	Ajs_1207	-	acriflavin resistance protein
1184	 62.93	0	1281785..1283095	+	436	121593620	tig	Ajs_1208	-	trigger factor
1185	 60.59	-1	1283219..1283827	+	202	121593621	-	Ajs_1209	-	ATP-dependent Clp protease proteolytic subunit ClpP
1186	 56.48	-2	1283925..1285190	+	421	121593622	clpX	Ajs_1210	-	ATP-dependent protease ATP-binding subunit
1187	 57.29	-1	1285330..1287750	+	806	121593623	-	Ajs_1211	-	Lon-A peptidase
1188	 62.38	0	1288148..1289383	+	411	121593624	-	Ajs_1213	-	phage integrase family protein
1189	 66.21	0	1289444..1290976	+	510	121593625	-	Ajs_1214	-	integrase catalytic subunit
1190	 64.48	0	1290966..1291787	+	273	121593626	-	Ajs_1215	-	IstB ATP binding domain-containing protein
1191	 66.51	0	1291835..1292470	+	211	121593627	-	Ajs_1216	-	IstB ATP binding domain-containing protein
1192	 64.24	0	1294231..1295220	+	329	121593628	-	Ajs_1219	-	transcriptional regulator
1193	 60.53	-1	1295245..1295880	-	211	121593629	-	Ajs_1220	-	LysR family transcriptional regulator
1194	 67.48	0	1296054..1296671	+	205	121593630	-	Ajs_1221	-	hypothetical protein
1195	 66.67	0	1296668..1298338	+	556	121593631	-	Ajs_1222	-	integrase catalytic subunit
1196	 65.77	0	1298335..1299231	+	298	121593632	-	Ajs_1223	-	TniB family protein
1197	 64.20	0	1299303..1300721	+	472	121593633	-	Ajs_1224	-	hypothetical protein
1198	 64.55	0	1301445..1302671	+	408	121593634	-	Ajs_1225	-	transposase IS116/IS110/IS902 family protein
1199	 67.97	0	1302933..1304159	+	408	121593635	-	Ajs_1226	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1200	 61.35	-1	1305583..1306485	-	300	121593636	-	Ajs_1229	-	LysR family transcriptional regulator
1201	 63.27	0	1306498..1307586	-	362	121593637	-	Ajs_1230	-	transposase, IS4 family protein
1202	 55.32	-2	1307658..1307798	-	46	121593638	-	Ajs_1231	-	hypothetical protein
1203	 63.59	0	1308007..1311126	-	1039	121593639	-	Ajs_1232	-	CzcA family heavy metal efflux protein
1204	 65.95	0	1311369..1312349	-	326	121593640	-	Ajs_1234	-	copper resistance B precursor
1205	 63.76	0	1312375..1314267	-	630	121593641	-	Ajs_1235	-	CopA family copper resistance protein
1206	 60.45	-1	1314511..1315170	+	219	121593642	-	Ajs_1236	-	two component heavy metal response transcriptional regulator
1207	 60.29	-1	1315520..1316680	-	386	121593643	-	Ajs_1238	-	integrase catalytic subunit
1208	 65.31	0	1316791..1317159	+	122	121593644	-	Ajs_1239	-	integrase, catalytic region
1209	 63.57	0	1317323..1319257	-	644	121593645	-	Ajs_1240	-	iron permease FTR1
1210	 59.54	-1	1319385..1319819	-	144	121593646	-	Ajs_1241	-	MerR family transcriptional regulator
1211	 61.42	-1	1319914..1322313	+	799	121593647	-	Ajs_1242	-	heavy metal translocating P-type ATPase
1212	 57.44	-1	1322310..1323404	+	364	121593648	-	Ajs_1243	-	signal peptidase II
1213	 63.85	0	1323801..1325684	-	627	121593649	-	Ajs_1245	-	relaxase
1214	 63.57	0	1325914..1326300	+	128	121593650	-	Ajs_1246	-	AbrB family transcriptional regulator
1215	 60.35	-1	1326300..1326758	+	152	121593651	-	Ajs_1247	-	hypothetical protein
1216	 64.81	0	1326785..1327162	+	125	121593652	-	Ajs_1248	-	hypothetical protein
1217	 62.91	0	1327178..1328695	-	505	121593653	-	Ajs_1249	-	hypothetical protein
1218	 71.67	+1	1328710..1329069	-	119	121593654	-	Ajs_1250	-	hypothetical protein
1219	 67.96	0	1329066..1330460	-	464	121593655	-	Ajs_1251	-	hypothetical protein
1220	 67.09	0	1330470..1331417	-	315	121593656	-	Ajs_1252	-	hypothetical protein
1221	 67.11	0	1331414..1331860	-	148	121593657	-	Ajs_1253	-	hypothetical protein
1222	 61.41	-1	1332024..1332518	-	164	121593658	-	Ajs_1254	-	DNA repair protein RadC
1223	 67.32	0	1332698..1333462	-	254	121593659	-	Ajs_1255	-	hypothetical protein
1224	 67.25	0	1333487..1336378	-	963	121593660	-	Ajs_1256	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.