IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1093	 67.97	0	1172956..1174182	-	408	121593529	-	Ajs_1116	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1094	 67.81	0	1174409..1175368	-	319	121593530	-	Ajs_1117	-	polysaccharide deacetylase
1095	 68.58	0	1175365..1176042	-	225	121593531	-	Ajs_1118	-	GntR family transcriptional regulator
1096	 69.84	0	1176095..1177009	-	304	121593532	-	Ajs_1119	-	LysR family transcriptional regulator
1097	 67.76	0	1177132..1178229	+	365	121593533	-	Ajs_1120	-	tartrate dehydrogenase
1098	 66.97	0	1178289..1179266	+	325	121593534	-	Ajs_1121	-	hypothetical protein
1099	 73.02	+1	1179320..1180642	+	440	121593535	-	Ajs_1122	-	hydroxypyruvate reductase
1100	 65.81	0	1180965..1181315	+	116	121593536	-	Ajs_1123	-	transthyretin
1101	 71.31	+1	1181501..1181974	-	157	121593537	-	Ajs_1124	-	hypothetical protein
1102	 70.83	0	1182072..1182959	+	295	121593538	-	Ajs_1125	-	hypothetical protein
1103	 68.72	0	1183033..1184490	-	485	121593539	-	Ajs_1126	-	aldehyde dehydrogenase
1104	 66.17	0	1184499..1185296	+	265	121593540	-	Ajs_1127	-	GntR family transcriptional regulator
1105	 64.68	0	1185485..1186690	+	401	121593541	-	Ajs_1128	-	hypothetical protein
1106	 68.69	0	1186724..1188007	+	427	121593542	-	Ajs_1129	-	guanine deaminase
1107	 61.90	0	1188098..1188664	+	188	121593543	dcd	Ajs_1130	-	deoxycytidine triphosphate deaminase
1108	 67.25	0	1189146..1190009	+	287	121593544	-	Ajs_1131	-	protein of unknown function, zinc metallopeptidase putative
1109	 67.01	0	1190125..1191579	+	484	121593545	-	Ajs_1132	-	DEAD/DEAH box helicase domain-containing protein
1110	 71.87	+1	1191673..1192287	-	204	121593546	-	Ajs_1133	-	hypothetical protein
1111	 64.66	0	1192352..1192900	-	182	121593547	-	Ajs_1134	-	NosL family protein
1112	 64.46	0	1192897..1193712	-	271	121593548	-	Ajs_1135	-	ABC-2 type transporter
1113	 68.81	0	1193733..1194665	-	310	121593549	-	Ajs_1136	-	ABC transporter related
1114	 64.07	0	1194640..1195911	-	423	121593550	-	Ajs_1137	-	periplasmic copper-binding
1115	 63.27	0	1195908..1198529	-	873	121593551	-	Ajs_1138	-	FMN-binding domain-containing protein
1116	 62.85	0	1198631..1200571	-	646	121593552	-	Ajs_1139	-	nitrous-oxide reductase
1117	 66.12	0	1200583..1200948	-	121	121593553	-	Ajs_1140	-	hypothetical protein
1118	 65.42	0	1201125..1201604	+	159	121593554	-	Ajs_1141	-	cytochrome c, class I
1119	 69.61	0	1201623..1202711	+	362	121593555	-	Ajs_1142	-	ApbE family lipoprotein
1120	 66.31	0	1202818..1203663	-	281	121593556	apaH	Ajs_1143	-	diadenosine tetraphosphatase
1121	 59.93	-1	1204003..1204299	+	98	121593557	-	Ajs_1144	-	histone family protein nucleoid-structuring protein H-NS
1122	 64.82	0	1204697..1207615	+	972	121593558	-	Ajs_1145	-	aconitate hydratase
1123	 72.61	+1	1207742..1208986	+	414	121593559	-	Ajs_1146	-	monooxygenase, FAD-binding
1124	 71.97	+1	1209074..1210336	-	420	121593560	-	Ajs_1147	-	major facilitator superfamily transporter
1125	 68.81	0	1210396..1211283	-	295	121593561	-	Ajs_1148	-	response regulator receiver protein
1126	 66.98	0	1211304..1212266	+	320	121593562	-	Ajs_1149	-	transposase IS116/IS110/IS902 family protein
1127	 68.84	0	1212369..1213472	-	367	121593563	-	Ajs_1150	-	histidine kinase internal region
1128	 72.27	+1	1213516..1213836	-	106	121593564	-	Ajs_1151	-	hypothetical protein
1129	 65.82	0	1214068..1214892	+	274	121593565	-	Ajs_1152	-	undecaprenyl-diphosphatase
1130	 69.35	0	1214898..1216688	-	596	121593566	-	Ajs_1153	-	diguanylate cyclase
1131	 69.73	0	1216797..1217612	-	271	121593567	-	Ajs_1154	-	alpha/beta hydrolase fold
1132	 65.70	0	1217621..1218448	-	275	121593568	-	Ajs_1155	-	20S proteasome, A and B subunits
1133	 71.90	+1	1221339..1222943	-	534	121593569	-	Ajs_1157	-	alkaline phosphatase
1134	 67.26	0	1222958..1224481	-	507	121593570	-	Ajs_1158	-	diguanylate cyclase
1135	 65.74	0	1224575..1225549	-	324	121593571	-	Ajs_1159	-	alcohol dehydrogenase
1136	 61.80	0	1225626..1226468	+	280	121593572	-	Ajs_1160	-	5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase
1137	 66.67	0	1226468..1227238	+	256	121593573	-	Ajs_1161	-	protein-L-isoaspartate O-methyltransferase
1138	 65.24	0	1227250..1228161	+	303	121593574	-	Ajs_1162	-	peptidase M23B
1139	 64.78	0	1228176..1229180	+	334	121593575	-	Ajs_1163	-	ribosomal large subunit pseudouridine synthase D
1140	 60.00	-1	1229331..1230035	+	234	121593576	-	Ajs_1164	-	condensin subunit ScpB
1141	 64.29	0	1230032..1231375	+	447	121593577	-	Ajs_1165	-	ribosomal large subunit pseudouridine synthase B
1142	 62.21	0	1231452..1231877	+	141	121593578	-	Ajs_1166	-	nucleoside diphosphate kinase
1143	 60.71	-1	1231962..1233086	+	374	121593579	-	Ajs_1167	-	radical SAM protein
1144	 63.29	0	1233118..1233945	+	275	121593580	-	Ajs_1168	-	type IV pilus biogenesis/stability protein PilW
1145	 66.77	0	1233980..1234906	+	308	121593581	-	Ajs_1169	-	hypothetical protein
1146	 65.57	0	1234907..1236184	+	425	121593582	ispG	Ajs_1170	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1147	 66.59	0	1236282..1237571	+	429	121593583	-	Ajs_1171	-	histidyl-tRNA synthetase
1148	 64.16	0	1237585..1238262	+	225	121593584	-	Ajs_1172	-	hypothetical protein
1149	 68.40	0	1238259..1239410	+	383	121593585	-	Ajs_1173	-	Pyrrolo-quinoline quinone
1150	 60.71	-1	1239430..1240773	+	447	121593586	-	Ajs_1174	-	small GTP-binding protein
1151	 54.76	-2	1240851..1241102	+	83	121593587	-	Ajs_1175	-	RNA chaperone Hfq
1152	 60.14	-1	1241166..1242344	+	392	121593588	-	Ajs_1176	-	small GTP-binding protein
1153	 61.21	-1	1242396..1243751	+	451	121593589	-	Ajs_1177	-	HflK protein
1154	 58.17	-1	1243761..1244666	+	301	121593590	-	Ajs_1178	-	HflC protein
1155	 60.56	-1	1244696..1244875	+	59	121593591	-	Ajs_1179	-	hypothetical protein
1156	 60.49	-1	1244951..1246099	+	382	121593592	-	Ajs_1180	-	tRNA synthetase, class II (G, H, P and S)
1157	 59.48	-1	1246129..1247505	+	458	121593593	-	Ajs_1181	-	adenylosuccinate synthetase
1158	 54.10	-2	1247577..1248101	+	174	121593594	-	Ajs_1182	-	phosphoribosyltransferase
1159	 58.54	-1	1253890..1254627	+	245	121593595	-	Ajs_1183	-	ribosomal small subunit pseudouridine synthase A
1160	 62.67	0	1254787..1255761	+	324	121593596	-	Ajs_1184	-	hypothetical protein
1161	 64.64	0	1255748..1256587	+	279	121593597	-	Ajs_1185	-	polysaccharide deacetylase
1162	 65.27	0	1256638..1257636	+	332	121593598	-	Ajs_1186	-	hypothetical protein
1163	 64.89	0	1257652..1258554	+	300	121593599	-	Ajs_1187	-	putative transmembrane protein
1164	 65.09	0	1258551..1259372	+	273	121593600	-	Ajs_1188	-	molybdopterin binding domain-containing protein
1165	 63.63	0	1259529..1260944	+	471	121593601	-	Ajs_1189	-	L-glutamine synthetase
1166	 68.85	0	1261151..1261654	+	167	121593602	-	Ajs_1190	-	putative signal peptide protein
1167	 68.41	0	1261671..1262759	+	362	121593603	-	Ajs_1191	-	signal transduction histidine kinase, nitrogen specific, NtrB
1168	 70.25	0	1262811..1264346	+	511	121593604	-	Ajs_1192	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
1169	 70.96	0	1264528..1265481	+	317	121593605	-	Ajs_1193	-	hypothetical protein
1170	 66.54	0	1265522..1266298	-	258	121593606	-	Ajs_1194	-	exodeoxyribonuclease III Xth
1171	 70.71	0	1266369..1266863	-	164	121593607	-	Ajs_1195	-	dihydrofolate reductase
1172	 39.80	-2	1266866..1267561	-	231	121593608	-	Ajs_1196	-	hypothetical protein
1173	 64.87	0	1267599..1268432	-	277	121593609	-	Ajs_1197	-	thymidylate synthase
1174	 68.49	0	1268485..1269909	-	474	121593610	-	Ajs_1198	-	FAD linked oxidase domain-containing protein
1175	 74.34	+1	1269951..1270367	-	138	121593611	-	Ajs_1199	-	membrane protein-like protein
1176	 70.00	0	1270389..1271678	+	429	121593612	-	Ajs_1200	-	putative ribonuclease BN
1177	 75.86	+1	1271703..1273007	-	434	121593613	-	Ajs_1201	-	amine oxidase
1178	 66.55	0	1273004..1273843	-	279	121593614	-	Ajs_1202	-	farnesyl-diphosphate farnesyltransferase
1179	 66.11	0	1273991..1274881	+	296	121593615	-	Ajs_1203	-	metallophosphoesterase
1180	 70.18	0	1274887..1276053	+	388	121593616	-	Ajs_1204	-	monogalactosyldiacylglycerol synthase
1181	 73.74	+1	1276139..1277029	-	296	121593617	-	Ajs_1205	-	squalene/phytoene synthase
1182	 73.58	+1	1277117..1278274	+	385	121593618	-	Ajs_1206	-	RND family efflux transporter MFP subunit
1183	 67.24	0	1278381..1281530	+	1049	121593619	-	Ajs_1207	-	acriflavin resistance protein
1184	 62.93	0	1281785..1283095	+	436	121593620	tig	Ajs_1208	-	trigger factor
1185	 60.59	-1	1283219..1283827	+	202	121593621	-	Ajs_1209	-	ATP-dependent Clp protease proteolytic subunit ClpP
1186	 56.48	-2	1283925..1285190	+	421	121593622	clpX	Ajs_1210	-	ATP-dependent protease ATP-binding subunit
1187	 57.29	-1	1285330..1287750	+	806	121593623	-	Ajs_1211	-	Lon-A peptidase
1188	 62.38	0	1288148..1289383	+	411	121593624	-	Ajs_1213	-	phage integrase family protein
1189	 66.21	0	1289444..1290976	+	510	121593625	-	Ajs_1214	-	integrase catalytic subunit
1190	 64.48	0	1290966..1291787	+	273	121593626	-	Ajs_1215	-	IstB ATP binding domain-containing protein
1191	 66.51	0	1291835..1292470	+	211	121593627	-	Ajs_1216	-	IstB ATP binding domain-containing protein
1192	 64.24	0	1294231..1295220	+	329	121593628	-	Ajs_1219	-	transcriptional regulator
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.