IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1048	 64.05	0	1123951..1124256	-	101	121593484	-	Ajs_1069	-	cytochrome c, class I
1049	 57.61	-1	1124365..1124607	+	80	121593485	-	Ajs_1070	-	hypothetical protein
1050	 68.14	0	1124740..1126434	-	564	121593486	-	Ajs_1071	-	dihydroxy-acid dehydratase
1051	 67.91	0	1126664..1128520	+	618	121593487	-	Ajs_1072	-	dihydroxy-acid dehydratase
1052	 67.12	0	1128663..1129103	+	146	121593488	-	Ajs_1073	-	hypothetical protein
1053	 66.25	0	1129117..1129599	-	160	121593489	-	Ajs_1074	-	bacterioferritin
1054	 66.55	0	1129772..1130605	+	277	121593490	-	Ajs_1075	-	prolipoprotein diacylglyceryl transferase
1055	 69.79	0	1130841..1131512	+	223	121593491	-	Ajs_1076	-	GntR family transcriptional regulator
1056	 68.65	0	1131509..1132969	+	486	121593492	-	Ajs_1077	-	malonyl-CoA decarboxylase
1057	 68.31	0	1133116..1134150	+	344	121593493	-	Ajs_1078	-	hypothetical protein
1058	 69.20	0	1134218..1135045	+	275	121593494	-	Ajs_1079	-	enoyl-CoA hydratase/isomerase
1059	 66.35	0	1135067..1136626	+	519	121593495	-	Ajs_1080	-	malonyl-CoA synthase
1060	 63.74	0	1136732..1137175	-	147	121593496	-	Ajs_1081	-	UspA domain-containing protein
1061	 69.78	0	1137248..1139689	+	813	121593497	-	Ajs_1082	-	heavy metal translocating P-type ATPase
1062	 55.80	-2	1139691..1139828	+	45	121593498	-	Ajs_1083	-	cytochrome oxidase maturation protein, cbb3-type
1063	 60.35	-1	1139894..1141333	+	479	121593499	-	Ajs_1084	-	cytochrome c oxidase, cbb3-type, subunit I
1064	 57.50	-1	1141353..1141985	+	210	121593500	-	Ajs_1085	-	cytochrome c oxidase, cbb3-type, subunit II
1065	 64.49	0	1142000..1142137	+	45	121593501	-	Ajs_1086	-	Cbb3-type cytochrome oxidase component
1066	 60.77	-1	1142167..1143081	+	304	121593502	-	Ajs_1087	-	cytochrome c oxidase, cbb3-type, subunit III
1067	 56.41	-2	1143166..1144608	+	480	121593503	-	Ajs_1088	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1068	 59.14	-1	1144670..1144948	+	92	121593504	-	Ajs_1089	-	hypothetical protein
1069	 56.27	-2	1144986..1145312	+	108	121593505	-	Ajs_1090	-	hypothetical protein
1070	 54.44	-2	1145353..1146096	-	247	121593506	-	Ajs_1091	-	CRP/FNR family transcriptional regulator
1071	 57.48	-1	1146268..1147650	+	460	121593507	-	Ajs_1092	-	coproporphyrinogen III oxidase
1072	 66.81	0	1147654..1148373	+	239	121593508	-	Ajs_1093	-	hypothetical protein
1073	 68.41	0	1149012..1149356	-	114	121593509	-	Ajs_1094	-	cell division protein ZapA
1074	 68.33	0	1149353..1149592	-	79	121593510	-	Ajs_1095	-	hypothetical protein
1075	 67.46	0	1149951..1151831	+	626	121593511	-	Ajs_1096	-	TonB-dependent receptor
1076	 72.70	+1	1151854..1153212	+	452	121593512	-	Ajs_1097	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
1077	 69.67	0	1153209..1153808	+	199	121593513	-	Ajs_1098	-	adenosylcobinamide kinase
1078	 72.05	+1	1153805..1154695	+	296	121593514	-	Ajs_1099	-	periplasmic binding protein
1079	 73.41	+1	1154692..1155774	+	360	121593515	-	Ajs_1100	-	transport system permease protein
1080	 71.01	0	1155771..1156553	+	260	121593516	-	Ajs_1101	-	ABC transporter related
1081	 65.09	0	1156914..1157483	+	189	121593517	-	Ajs_1102	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1082	 67.28	0	1158904..1159230	-	108	121593518	-	Ajs_1105	-	hypothetical protein
1083	 63.03	0	1159398..1160084	-	228	121593519	-	Ajs_1106	-	hypothetical protein
1084	 62.18	0	1160193..1161419	-	408	121593520	-	Ajs_1107	-	transposase, mutator type
1085	 69.42	0	1161652..1162377	-	241	121593521	-	Ajs_1108	-	haloacid dehalogenase, type II
1086	 73.06	+1	1162521..1163756	+	411	121593522	-	Ajs_1109	-	major facilitator superfamily transporter
1087	 71.93	+1	1163831..1164970	-	379	121593523	-	Ajs_1110	-	hypothetical protein
1088	 70.65	0	1164975..1165451	-	158	121593524	-	Ajs_1111	-	MarR family transcriptional regulator
1089	 66.62	0	1165547..1167856	-	769	121593525	-	Ajs_1112	-	malic enzyme
1090	 67.20	0	1168046..1169533	-	495	121593526	-	Ajs_1113	-	uracil-xanthine permease
1091	 67.91	0	1169838..1171127	-	429	121593527	-	Ajs_1114	-	peptidase dimerisation domain-containing protein
1092	 68.47	0	1171135..1172904	-	589	121593528	-	Ajs_1115	-	putative bifunctional OHCU decarboxylase/allantoate amidohydrolase
1093	 67.97	0	1172956..1174182	-	408	121593529	-	Ajs_1116	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1094	 67.81	0	1174409..1175368	-	319	121593530	-	Ajs_1117	-	polysaccharide deacetylase
1095	 68.58	0	1175365..1176042	-	225	121593531	-	Ajs_1118	-	GntR family transcriptional regulator
1096	 69.84	0	1176095..1177009	-	304	121593532	-	Ajs_1119	-	LysR family transcriptional regulator
1097	 67.76	0	1177132..1178229	+	365	121593533	-	Ajs_1120	-	tartrate dehydrogenase
1098	 66.97	0	1178289..1179266	+	325	121593534	-	Ajs_1121	-	hypothetical protein
1099	 73.02	+1	1179320..1180642	+	440	121593535	-	Ajs_1122	-	hydroxypyruvate reductase
1100	 65.81	0	1180965..1181315	+	116	121593536	-	Ajs_1123	-	transthyretin
1101	 71.31	+1	1181501..1181974	-	157	121593537	-	Ajs_1124	-	hypothetical protein
1102	 70.83	0	1182072..1182959	+	295	121593538	-	Ajs_1125	-	hypothetical protein
1103	 68.72	0	1183033..1184490	-	485	121593539	-	Ajs_1126	-	aldehyde dehydrogenase
1104	 66.17	0	1184499..1185296	+	265	121593540	-	Ajs_1127	-	GntR family transcriptional regulator
1105	 64.68	0	1185485..1186690	+	401	121593541	-	Ajs_1128	-	hypothetical protein
1106	 68.69	0	1186724..1188007	+	427	121593542	-	Ajs_1129	-	guanine deaminase
1107	 61.90	0	1188098..1188664	+	188	121593543	dcd	Ajs_1130	-	deoxycytidine triphosphate deaminase
1108	 67.25	0	1189146..1190009	+	287	121593544	-	Ajs_1131	-	protein of unknown function, zinc metallopeptidase putative
1109	 67.01	0	1190125..1191579	+	484	121593545	-	Ajs_1132	-	DEAD/DEAH box helicase domain-containing protein
1110	 71.87	+1	1191673..1192287	-	204	121593546	-	Ajs_1133	-	hypothetical protein
1111	 64.66	0	1192352..1192900	-	182	121593547	-	Ajs_1134	-	NosL family protein
1112	 64.46	0	1192897..1193712	-	271	121593548	-	Ajs_1135	-	ABC-2 type transporter
1113	 68.81	0	1193733..1194665	-	310	121593549	-	Ajs_1136	-	ABC transporter related
1114	 64.07	0	1194640..1195911	-	423	121593550	-	Ajs_1137	-	periplasmic copper-binding
1115	 63.27	0	1195908..1198529	-	873	121593551	-	Ajs_1138	-	FMN-binding domain-containing protein
1116	 62.85	0	1198631..1200571	-	646	121593552	-	Ajs_1139	-	nitrous-oxide reductase
1117	 66.12	0	1200583..1200948	-	121	121593553	-	Ajs_1140	-	hypothetical protein
1118	 65.42	0	1201125..1201604	+	159	121593554	-	Ajs_1141	-	cytochrome c, class I
1119	 69.61	0	1201623..1202711	+	362	121593555	-	Ajs_1142	-	ApbE family lipoprotein
1120	 66.31	0	1202818..1203663	-	281	121593556	apaH	Ajs_1143	-	diadenosine tetraphosphatase
1121	 59.93	-1	1204003..1204299	+	98	121593557	-	Ajs_1144	-	histone family protein nucleoid-structuring protein H-NS
1122	 64.82	0	1204697..1207615	+	972	121593558	-	Ajs_1145	-	aconitate hydratase
1123	 72.61	+1	1207742..1208986	+	414	121593559	-	Ajs_1146	-	monooxygenase, FAD-binding
1124	 71.97	+1	1209074..1210336	-	420	121593560	-	Ajs_1147	-	major facilitator superfamily transporter
1125	 68.81	0	1210396..1211283	-	295	121593561	-	Ajs_1148	-	response regulator receiver protein
1126	 66.98	0	1211304..1212266	+	320	121593562	-	Ajs_1149	-	transposase IS116/IS110/IS902 family protein
1127	 68.84	0	1212369..1213472	-	367	121593563	-	Ajs_1150	-	histidine kinase internal region
1128	 72.27	+1	1213516..1213836	-	106	121593564	-	Ajs_1151	-	hypothetical protein
1129	 65.82	0	1214068..1214892	+	274	121593565	-	Ajs_1152	-	undecaprenyl-diphosphatase
1130	 69.35	0	1214898..1216688	-	596	121593566	-	Ajs_1153	-	diguanylate cyclase
1131	 69.73	0	1216797..1217612	-	271	121593567	-	Ajs_1154	-	alpha/beta hydrolase fold
1132	 65.70	0	1217621..1218448	-	275	121593568	-	Ajs_1155	-	20S proteasome, A and B subunits
1133	 71.90	+1	1221339..1222943	-	534	121593569	-	Ajs_1157	-	alkaline phosphatase
1134	 67.26	0	1222958..1224481	-	507	121593570	-	Ajs_1158	-	diguanylate cyclase
1135	 65.74	0	1224575..1225549	-	324	121593571	-	Ajs_1159	-	alcohol dehydrogenase
1136	 61.80	0	1225626..1226468	+	280	121593572	-	Ajs_1160	-	5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase
1137	 66.67	0	1226468..1227238	+	256	121593573	-	Ajs_1161	-	protein-L-isoaspartate O-methyltransferase
1138	 65.24	0	1227250..1228161	+	303	121593574	-	Ajs_1162	-	peptidase M23B
1139	 64.78	0	1228176..1229180	+	334	121593575	-	Ajs_1163	-	ribosomal large subunit pseudouridine synthase D
1140	 60.00	-1	1229331..1230035	+	234	121593576	-	Ajs_1164	-	condensin subunit ScpB
1141	 64.29	0	1230032..1231375	+	447	121593577	-	Ajs_1165	-	ribosomal large subunit pseudouridine synthase B
1142	 62.21	0	1231452..1231877	+	141	121593578	-	Ajs_1166	-	nucleoside diphosphate kinase
1143	 60.71	-1	1231962..1233086	+	374	121593579	-	Ajs_1167	-	radical SAM protein
1144	 63.29	0	1233118..1233945	+	275	121593580	-	Ajs_1168	-	type IV pilus biogenesis/stability protein PilW
1145	 66.77	0	1233980..1234906	+	308	121593581	-	Ajs_1169	-	hypothetical protein
1146	 65.57	0	1234907..1236184	+	425	121593582	ispG	Ajs_1170	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1147	 66.59	0	1236282..1237571	+	429	121593583	-	Ajs_1171	-	histidyl-tRNA synthetase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.