IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1007	 69.82	0	1069040..1071193	-	717	121593443	-	Ajs_1027	-	TonB-dependent siderophore receptor
1008	 71.30	+1	1071268..1073424	-	718	121593444	-	Ajs_1028	-	TonB-dependent siderophore receptor
1009	 72.59	+1	1073457..1074182	-	241	121593445	-	Ajs_1029	-	hypothetical protein
1010	 77.01	+2	1074448..1074795	-	115	121593446	-	Ajs_1030	-	hypothetical protein
1011	 72.31	+1	1074797..1076479	-	560	121593447	-	Ajs_1031	-	PepSY-associated TM helix domain-containing protein
1012	 72.17	+1	1076476..1076784	-	102	121593448	-	Ajs_1032	-	putative iron uptake protein
1013	 71.17	0	1077108..1078040	-	310	121593449	-	Ajs_1033	-	3-mercaptopyruvate sulfurtransferase
1014	 69.63	0	1078068..1078979	-	303	121593450	-	Ajs_1034	-	putative transmembrane protein
1015	 63.42	0	1079077..1080216	-	379	121593451	-	Ajs_1035	-	Rieske (2Fe-2S) domain-containing protein
1016	 68.89	0	1080499..1080768	+	89	121593452	-	Ajs_1036	-	exodeoxyribonuclease VII, small subunit
1017	 69.23	0	1080765..1081700	+	311	121593453	-	Ajs_1037	-	farnesyl-diphosphate synthase
1018	 68.41	0	1081806..1083695	+	629	121593454	-	Ajs_1038	-	1-deoxy-D-xylulose-5-phosphate synthase
1019	 62.33	0	1083969..1085051	+	360	121593455	-	Ajs_1039	-	TRAP dicarboxylate transporter- DctP subunit
1020	 65.02	0	1085191..1087017	-	608	121593456	-	Ajs_1040	-	TRAP dicarboxylate transporter, DctM subunit
1021	 61.40	-1	1087039..1087665	-	208	121593457	-	Ajs_1041	-	tripartite ATP-independent periplasmic transporter DctQ
1022	 68.32	0	1087989..1089860	-	623	121593458	-	Ajs_1042	-	gamma-glutamyltransferase 1
1023	 65.61	0	1095026..1096159	+	377	121593459	-	Ajs_1044	-	response regulator receiver modulated metal dependent phosphohydrolase
1024	 68.68	0	1096243..1097286	-	347	121593460	-	Ajs_1045	-	inositol-phosphate phosphatase
1025	 66.92	0	1097382..1098176	+	264	121593461	-	Ajs_1046	-	RNA methyltransferase
1026	 67.05	0	1098210..1099001	+	263	121593462	-	Ajs_1047	-	serine O-acetyltransferase
1027	 70.00	0	1099010..1099669	+	219	121593463	-	Ajs_1048	-	nitroreductase
1028	 66.85	0	1099786..1100886	-	366	121593464	-	Ajs_1049	-	alcohol dehydrogenase
1029	 72.86	+1	1100944..1102590	-	548	121593465	-	Ajs_1050	-	sulphate transporter
1030	 68.80	0	1102619..1103227	-	202	121593466	-	Ajs_1051	-	molybdopterin adenylyltransferase
1031	 66.21	0	1103220..1103882	-	220	121593467	-	Ajs_1052	-	hypothetical protein
1032	 68.99	0	1103927..1105387	+	486	121593468	-	Ajs_1053	-	microcin-processing peptidase 1
1033	 70.36	0	1105413..1106333	+	306	121593469	-	Ajs_1054	-	hypothetical protein
1034	 69.39	0	1106418..1107446	-	342	121593470	-	Ajs_1055	-	hypothetical protein
1035	 66.00	0	1107589..1109229	-	546	121593471	-	Ajs_1056	-	fumarase
1036	 69.32	0	1109347..1110738	+	463	121593472	fumC	Ajs_1057	-	fumarate hydratase
1037	 70.27	0	1110783..1111559	-	258	121593473	-	Ajs_1058	-	CRP/FNR family transcriptional regulator
1038	 72.29	+1	1111750..1112478	-	242	121593474	-	Ajs_1059	-	two component transcriptional regulator
1039	 72.28	+1	1112475..1114007	-	510	121593475	-	Ajs_1060	-	integral membrane sensor signal transduction histidine kinase
1040	 64.91	0	1114205..1115056	-	283	121593476	proX	Ajs_1061	-	glycine betaine transporter periplasmic subunit
1041	 61.39	-1	1115353..1116432	-	359	121593477	-	Ajs_1062	-	integrase catalytic subunit
1042	 68.27	0	1116486..1116734	-	82	121593478	-	Ajs_1063	-	hypothetical protein
1043	 72.65	+1	1116771..1117973	-	400	121593479	-	Ajs_1064	-	binding-protein-dependent transport systems inner membrane component
1044	 68.92	0	1117998..1119374	-	458	121593480	-	Ajs_1065	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1045	 63.24	0	1119944..1120555	-	203	121593481	-	Ajs_1066	-	hypothetical protein
1046	 66.52	0	1120761..1122758	+	665	121593482	-	Ajs_1067	-	acetyl-coenzyme A synthetase
1047	 66.27	0	1123355..1123864	+	169	121593483	-	Ajs_1068	-	hypothetical protein
1048	 64.05	0	1123951..1124256	-	101	121593484	-	Ajs_1069	-	cytochrome c, class I
1049	 57.61	-1	1124365..1124607	+	80	121593485	-	Ajs_1070	-	hypothetical protein
1050	 68.14	0	1124740..1126434	-	564	121593486	-	Ajs_1071	-	dihydroxy-acid dehydratase
1051	 67.91	0	1126664..1128520	+	618	121593487	-	Ajs_1072	-	dihydroxy-acid dehydratase
1052	 67.12	0	1128663..1129103	+	146	121593488	-	Ajs_1073	-	hypothetical protein
1053	 66.25	0	1129117..1129599	-	160	121593489	-	Ajs_1074	-	bacterioferritin
1054	 66.55	0	1129772..1130605	+	277	121593490	-	Ajs_1075	-	prolipoprotein diacylglyceryl transferase
1055	 69.79	0	1130841..1131512	+	223	121593491	-	Ajs_1076	-	GntR family transcriptional regulator
1056	 68.65	0	1131509..1132969	+	486	121593492	-	Ajs_1077	-	malonyl-CoA decarboxylase
1057	 68.31	0	1133116..1134150	+	344	121593493	-	Ajs_1078	-	hypothetical protein
1058	 69.20	0	1134218..1135045	+	275	121593494	-	Ajs_1079	-	enoyl-CoA hydratase/isomerase
1059	 66.35	0	1135067..1136626	+	519	121593495	-	Ajs_1080	-	malonyl-CoA synthase
1060	 63.74	0	1136732..1137175	-	147	121593496	-	Ajs_1081	-	UspA domain-containing protein
1061	 69.78	0	1137248..1139689	+	813	121593497	-	Ajs_1082	-	heavy metal translocating P-type ATPase
1062	 55.80	-2	1139691..1139828	+	45	121593498	-	Ajs_1083	-	cytochrome oxidase maturation protein, cbb3-type
1063	 60.35	-1	1139894..1141333	+	479	121593499	-	Ajs_1084	-	cytochrome c oxidase, cbb3-type, subunit I
1064	 57.50	-1	1141353..1141985	+	210	121593500	-	Ajs_1085	-	cytochrome c oxidase, cbb3-type, subunit II
1065	 64.49	0	1142000..1142137	+	45	121593501	-	Ajs_1086	-	Cbb3-type cytochrome oxidase component
1066	 60.77	-1	1142167..1143081	+	304	121593502	-	Ajs_1087	-	cytochrome c oxidase, cbb3-type, subunit III
1067	 56.41	-2	1143166..1144608	+	480	121593503	-	Ajs_1088	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1068	 59.14	-1	1144670..1144948	+	92	121593504	-	Ajs_1089	-	hypothetical protein
1069	 56.27	-2	1144986..1145312	+	108	121593505	-	Ajs_1090	-	hypothetical protein
1070	 54.44	-2	1145353..1146096	-	247	121593506	-	Ajs_1091	-	CRP/FNR family transcriptional regulator
1071	 57.48	-1	1146268..1147650	+	460	121593507	-	Ajs_1092	-	coproporphyrinogen III oxidase
1072	 66.81	0	1147654..1148373	+	239	121593508	-	Ajs_1093	-	hypothetical protein
1073	 68.41	0	1149012..1149356	-	114	121593509	-	Ajs_1094	-	cell division protein ZapA
1074	 68.33	0	1149353..1149592	-	79	121593510	-	Ajs_1095	-	hypothetical protein
1075	 67.46	0	1149951..1151831	+	626	121593511	-	Ajs_1096	-	TonB-dependent receptor
1076	 72.70	+1	1151854..1153212	+	452	121593512	-	Ajs_1097	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
1077	 69.67	0	1153209..1153808	+	199	121593513	-	Ajs_1098	-	adenosylcobinamide kinase
1078	 72.05	+1	1153805..1154695	+	296	121593514	-	Ajs_1099	-	periplasmic binding protein
1079	 73.41	+1	1154692..1155774	+	360	121593515	-	Ajs_1100	-	transport system permease protein
1080	 71.01	0	1155771..1156553	+	260	121593516	-	Ajs_1101	-	ABC transporter related
1081	 65.09	0	1156914..1157483	+	189	121593517	-	Ajs_1102	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1082	 67.28	0	1158904..1159230	-	108	121593518	-	Ajs_1105	-	hypothetical protein
1083	 63.03	0	1159398..1160084	-	228	121593519	-	Ajs_1106	-	hypothetical protein
1084	 62.18	0	1160193..1161419	-	408	121593520	-	Ajs_1107	-	transposase, mutator type
1085	 69.42	0	1161652..1162377	-	241	121593521	-	Ajs_1108	-	haloacid dehalogenase, type II
1086	 73.06	+1	1162521..1163756	+	411	121593522	-	Ajs_1109	-	major facilitator superfamily transporter
1087	 71.93	+1	1163831..1164970	-	379	121593523	-	Ajs_1110	-	hypothetical protein
1088	 70.65	0	1164975..1165451	-	158	121593524	-	Ajs_1111	-	MarR family transcriptional regulator
1089	 66.62	0	1165547..1167856	-	769	121593525	-	Ajs_1112	-	malic enzyme
1090	 67.20	0	1168046..1169533	-	495	121593526	-	Ajs_1113	-	uracil-xanthine permease
1091	 67.91	0	1169838..1171127	-	429	121593527	-	Ajs_1114	-	peptidase dimerisation domain-containing protein
1092	 68.47	0	1171135..1172904	-	589	121593528	-	Ajs_1115	-	putative bifunctional OHCU decarboxylase/allantoate amidohydrolase
1093	 67.97	0	1172956..1174182	-	408	121593529	-	Ajs_1116	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1094	 67.81	0	1174409..1175368	-	319	121593530	-	Ajs_1117	-	polysaccharide deacetylase
1095	 68.58	0	1175365..1176042	-	225	121593531	-	Ajs_1118	-	GntR family transcriptional regulator
1096	 69.84	0	1176095..1177009	-	304	121593532	-	Ajs_1119	-	LysR family transcriptional regulator
1097	 67.76	0	1177132..1178229	+	365	121593533	-	Ajs_1120	-	tartrate dehydrogenase
1098	 66.97	0	1178289..1179266	+	325	121593534	-	Ajs_1121	-	hypothetical protein
1099	 73.02	+1	1179320..1180642	+	440	121593535	-	Ajs_1122	-	hydroxypyruvate reductase
1100	 65.81	0	1180965..1181315	+	116	121593536	-	Ajs_1123	-	transthyretin
1101	 71.31	+1	1181501..1181974	-	157	121593537	-	Ajs_1124	-	hypothetical protein
1102	 70.83	0	1182072..1182959	+	295	121593538	-	Ajs_1125	-	hypothetical protein
1103	 68.72	0	1183033..1184490	-	485	121593539	-	Ajs_1126	-	aldehyde dehydrogenase
1104	 66.17	0	1184499..1185296	+	265	121593540	-	Ajs_1127	-	GntR family transcriptional regulator
1105	 64.68	0	1185485..1186690	+	401	121593541	-	Ajs_1128	-	hypothetical protein
1106	 68.69	0	1186724..1188007	+	427	121593542	-	Ajs_1129	-	guanine deaminase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.