IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
915	 45.92	+1	1069818..1070270	-	150	126208403	-	APL_0927	-	hypothetical protein
916	 39.46	0	1070318..1070839	-	173	126208404	hscB	APL_0928	-	co-chaperone HscB
917	 39.20	0	1070849..1071172	-	107	126208405	iscA	APL_0929	-	iron-binding protein IscA
918	 42.19	0	1071314..1071697	-	127	126208406	nifU	APL_0930	-	scaffold protein
919	 43.36	0	1071830..1073056	-	408	126208407	iscS	APL_0931	-	cysteine desulfurase
920	 42.38	0	1073111..1073563	-	150	126208408	-	APL_0932	-	putative HTH-type transcriptional regulator
921	 43.53	0	1074053..1075444	+	463	126208409	ompP1	APL_0933	-	putative outer membrane protein precursor
922	 43.44	0	1075530..1076093	+	187	126208410	ogt	APL_0934	-	methylated-DNA--protein-cysteine S-methyltransferase
923	 42.09	0	1076113..1077963	-	616	126208411	-	APL_0935	-	aerobic respiration control sensor protein
924	 38.31	0	1078069..1078932	-	287	126208412	-	APL_0936	-	hypothetical protein
925	 40.52	0	1079048..1079590	-	180	126208413	-	APL_0937	-	hypothetical protein
926	 40.16	0	1079580..1080224	-	214	126208414	bioD	APL_0938	-	dithiobiotin synthetase
927	 41.89	0	1080224..1080994	-	256	126208415	bioC	APL_0939	-	biotin synthesis protein
928	 41.36	0	1080982..1081641	-	219	126208416	-	APL_0940	-	hypothetical protein
929	 42.70	0	1081651..1082814	-	387	126208417	bioF	APL_0941	-	8-amino-7-oxononanoate synthase
930	 42.34	0	1082841..1084139	-	432	126208418	bioA	APL_0942	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
931	 44.13	0	1084230..1085174	+	314	126208419	-	APL_0943	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
932	 42.77	0	1085256..1085732	-	158	126208420	greA	APL_0944	-	transcription elongation factor GreA
933	 41.51	0	1085816..1087258	+	480	126208421	dacB	APL_0945	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
934	 36.67	-1	1087295..1087564	-	89	126208422	-	APL_0946	-	hypothetical protein
935	 39.13	0	1087883..1089004	-	373	126208423	-	APL_0947	-	transposase
936	 39.48	0	1089835..1090875	+	346	126208424	-	APL_0948	-	transposase
937	 27.45	-2	1090914..1091474	-	186	126208425	-	APL_0949	-	hypothetical protein
938	 31.38	-2	1091939..1092502	-	187	126208426	-	APL_0950	-	hypothetical protein
939	 33.66	-2	1092656..1092964	-	102	126208427	-	APL_0951	-	hypothetical protein
940	 38.23	0	1093033..1094115	+	360	126208428	-	APL_0952	-	putative transposase
941	 39.77	0	1094115..1094549	+	144	126208429	-	APL_0953	-	hypothetical protein
942	 34.87	-1	1094550..1094939	-	129	126208430	-	APL_0954	-	hypothetical protein
943	 29.84	-2	1094981..1095553	-	190	126208431	apxIIB	APL_0955	-	leukotoxin translocation ATP-binding protein LktB (apxIIB)
944	 36.50	-1	1095618..1098488	-	956	126208432	apxIIA	APL_0956	-	RTX-II toxin determinant A
945	 38.94	0	1099185..1100414	-	409	126208433	-	APL_0957	-	hypothetical protein
946	 44.65	0	1100837..1102426	+	529	126208434	purH	APL_0958	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
947	 39.34	0	1104021..1111811	-	2596	126208435	-	APL_0959	-	hemagglutinin/hemolysin-like protein
948	 41.04	0	1113814..1116150	-	778	126208436	ostA	APL_0962	-	organic solvent tolerance protein
949	 40.13	0	1116207..1117574	-	455	126208437	hemN	APL_0963	-	coproporphyrinogen III oxidase
950	 38.46	0	1117604..1118032	-	142	126208438	-	APL_0964	-	hypothetical protein
951	 40.59	0	1118087..1118665	-	192	126208439	-	APL_0965	-	hypothetical protein
952	 43.16	0	1118814..1120472	-	552	126208440	-	APL_0966	-	hypothetical protein
953	 43.68	0	1120735..1121952	+	405	126208441	gltS	APL_0967	-	sodium/glutamate symport carrier protein
954	 35.98	-1	1122022..1122399	-	125	126208442	-	APL_0968	-	hypothetical protein
955	 43.06	0	1122496..1125375	-	959	126208443	glnE	APL_0969	-	glutamate-ammonia-ligase adenylyltransferase
956	 47.19	+1	1125450..1125716	-	88	126208444	-	APL_0970	-	hypothetical protein
957	 42.28	0	1125743..1126234	-	163	126208445	-	APL_0971	-	putative acyl CoA thioester hydrolase
958	 36.23	-1	1126221..1126772	-	183	126208446	ispZ	APL_0972	-	intracellular septation protein A
959	 38.08	-1	1126774..1127511	-	245	126208447	-	APL_0973	-	hypothetical protein
960	 40.00	0	1127670..1128104	+	144	126208448	-	APL_0974	-	hypothetical protein
961	 40.86	0	1128272..1129228	+	318	126208449	-	APL_0975	-	hypothetical protein
962	 43.43	0	1129435..1130811	+	458	126208450	-	APL_0976	-	hypothetical protein
963	 42.91	0	1130902..1131705	+	267	126208451	xthA	APL_0977	-	exonuclease III
964	 41.69	0	1131769..1132653	-	294	126208452	ilvY	APL_0978	-	DNA-binding transcriptional regulator IlvY
965	 36.70	-1	1132654..1133694	-	346	126208453	lbgB	APL_0979	-	putative D-glycero-D-manno-heptosyl transferase
966	 35.98	-1	1133736..1134377	-	213	126208454	lbgA	APL_0980	-	putative LPS biosynthesis protein
967	 36.82	-1	1134486..1135547	+	353	126208455	-	APL_0981	-	hypothetical protein
968	 39.44	0	1135609..1135821	-	70	126208456	rpmE	APL_0982	-	50S ribosomal protein L31
969	 44.54	0	1136203..1138209	+	668	126208457	tktA	APL_0983	-	transketolase
970	 40.00	0	1138339..1138848	+	169	126208458	-	APL_0984	-	putative transposase
971	 38.10	-1	1138860..1139195	+	111	126208459	-	APL_0985	-	transposase
972	 39.41	0	1139161..1139670	+	169	126208460	-	APL_0986	-	transposase-like protein
973	 39.67	0	1139729..1141606	-	625	126208461	htpG	APL_0987	-	heat shock protein 90
974	 45.06	0	1141834..1143360	+	508	126208462	hktE	APL_0988	-	catalase
975	 35.00	-1	1143527..1143706	+	59	126208463	-	APL_0989	-	transposase
976	 38.35	0	1143726..1144064	+	112	126208464	-	APL_0990	-	transposase
977	 42.78	0	1144177..1145256	+	359	126208465	-	APL_0991	-	hypothetical protein
978	 43.99	0	1145469..1147739	+	756	126208466	nrdA	APL_0992	-	ribonucleotide-diphosphate reductase subunit alpha
979	 40.05	0	1148036..1149166	+	376	126208467	nrdB	APL_0993	-	ribonucleotide-diphosphate reductase subunit beta
980	 45.14	0	1149428..1150477	+	349	126208468	galT	APL_0994	-	galactose-1-phosphate uridylyltransferase
981	 46.15	+1	1150505..1151659	+	384	126208469	galK	APL_0995	-	galactokinase
982	 44.58	0	1151717..1152685	+	322	126208470	galM	APL_0996	-	aldose 1-epimerase
983	 41.28	0	1152710..1155730	+	1006	126208471	lacZ	APL_0997	-	beta-galactosidase
984	 40.11	0	1155848..1161703	-	1951	126208472	apxIVA	APL_0998	-	RTX toxin protein
985	 37.32	-1	1161732..1162208	-	158	126208473	-	APL_0999	-	hypothetical protein
986	 43.35	0	1162405..1163502	-	365	126208474	mrp	APL_1000	-	putative ATPase
987	 38.88	0	1163506..1165056	-	516	126208475	-	APL_1001	-	putative binding protein
988	 40.83	0	1165071..1165724	-	217	126208476	-	APL_1002	-	hypothetical protein
989	 41.80	0	1165846..1167723	-	625	126208477	ppiD	APL_1003	-	peptidyl-prolyl cis-trans isomerase D
990	 40.72	0	1167952..1169265	+	437	126208478	nhaP	APL_1004	-	Na(+)/H(+) exchanger beta-like protein
991	 38.89	0	1169387..1169656	+	89	126208479	rpsO	APL_1005	-	30S ribosomal protein S15
992	 39.89	0	1169734..1170603	+	289	126208480	-	APL_1006	-	hypothetical protein
993	 39.65	0	1170661..1171911	-	416	126208481	hemY	APL_1007	-	HemY-like protein
994	 39.67	0	1171923..1173263	-	446	126208482	hemX	APL_1008	-	putative uroporphyrin-III C-methyltransferase
995	 39.61	0	1173273..1174037	-	254	126208483	hemD	APL_1009	-	putative uroporphyrinogen-III synthase
996	 44.41	0	1174046..1174975	-	309	126208484	hemC	APL_1010	-	porphobilinogen deaminase
997	 43.73	0	1175244..1177859	+	871	126208485	adh2	APL_1011	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
998	 44.28	0	1178033..1179676	-	547	126208486	groEL	APL_1012	-	60 kDa chaperonin
999	 40.55	0	1179740..1180030	-	96	126208487	groES	APL_1013	-	10 kDa chaperonin
1000	 45.37	0	1180242..1180964	-	240	126208488	deoD	APL_1014	-	purine nucleoside phosphorylase DeoD-like protein
1001	 44.27	0	1181023..1181799	-	258	126208489	deoC	APL_1015	-	deoxyribose-phosphate aldolase
1002	 45.15	0	1181936..1183204	-	422	126208490	-	APL_1016	-	putative nucleoside transporter
1003	 43.10	0	1183417..1184061	+	214	126208491	-	APL_1017	-	hypothetical protein
1004	 47.35	+1	1184113..1184754	-	213	126208492	eda	APL_1018	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1005	 43.92	0	1184769..1185713	-	314	126208493	kdgK	APL_1019	-	2-dehydro-3-deoxygluconokinase
1006	 37.39	-1	1185726..1186316	-	196	126208494	uxaC	APL_1020	-	uronate isomerase
1007	 36.85	-1	1186618..1188096	+	492	126208495	-	APL_1021	-	alpha-glucosidase 2
1008	 35.02	-1	1188100..1188336	+	78	126208496	-	APL_1022	-	putative transcriptional regulator
1009	 34.36	-2	1188311..1188892	+	193	126208497	-	APL_1023	-	hypothetical protein
1010	 39.25	0	1188983..1189489	+	168	126208498	-	APL_1024	-	peptide methionine sulfoxide reductase MsrA
1011	 40.70	0	1189524..1190324	-	266	126208499	lsgF	APL_1025	-	putative glycosyl transferase
1012	 39.34	0	1190324..1191205	-	293	126208500	-	APL_1026	-	putative glycosyltransferase
1013	 38.17	-1	1191198..1192397	-	399	126208501	-	APL_1027	-	hypothetical protein
1014	 37.61	-1	1192398..1193168	-	256	126208502	-	APL_1028	-	putative glycosyltransferase
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.