IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
742	 40.82	0	862740..863300	-	186	126208230	seqA	APL_0752	-	replication initiation regulator SeqA
743	 43.00	0	863424..864209	+	261	126208231	-	APL_0753	-	putative esterase/lipase
744	 41.46	0	864217..864942	+	241	126208232	yecO	APL_0754	-	S-adenosyl-L-methionine-dependent methyltransferase
745	 44.74	0	865141..865929	+	262	126208233	fabI	APL_0755	-	enoyl-[acyl-carrier-protein] reductase (NADH)
746	 42.65	0	866377..866655	+	92	126208234	-	APL_0756	-	hypothetical protein
747	 43.75	0	866787..868763	+	658	126208235	rnb	APL_0757	-	exoribonuclease II
748	 41.13	0	868838..869209	+	123	126208236	-	APL_0758	-	hypothetical protein
749	 42.79	0	869206..869892	+	228	126208237	-	APL_0759	-	hypothetical protein
750	 42.68	0	869917..870729	+	270	126208238	apaH	APL_0760	-	diadenosine tetraphosphatase
751	 38.68	0	870918..871160	-	80	126208239	-	APL_0761	-	hypothetical protein
752	 39.15	0	871328..872083	+	251	126208240	-	APL_0762	-	hypothetical protein
753	 37.85	-1	872142..873203	+	353	126208241	perM	APL_0763	-	putative permease perM-like protein
754	 42.90	0	873233..874162	+	309	126208242	-	APL_0764	-	hypothetical protein
755	 43.74	0	874210..875295	+	361	126208243	queA	APL_0765	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
756	 39.78	0	875330..877624	-	764	126208244	rec2	APL_0766	-	recombination protein 2
757	 42.72	0	877724..878938	-	404	126208245	-	APL_0767	-	serine/threonine transporter SstT
758	 42.15	0	879187..879549	+	120	126208246	dgkA	APL_0768	-	diacylglycerol kinase
759	 40.21	0	879630..881273	+	547	126208247	ushA	APL_0769	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
760	 29.19	-2	881728..882330	+	200	126208248	-	APL_0770	-	hypothetical protein
761	 43.44	0	883954..885378	-	474	126208249	lpdA	APL_0771	-	dihydrolipoamide dehydrogenase
762	 44.92	0	885474..887372	-	632	126208250	aceF	APL_0772	-	dihydrolipoamide acetyltransferase
763	 42.75	0	887432..890086	-	884	126208251	aceE	APL_0773	-	pyruvate dehydrogenase subunit E1
764	 42.46	0	890441..891448	-	335	126208252	pyrD	APL_0774	-	dihydroorotate dehydrogenase 2
765	 46.06	+1	891522..892472	-	316	126208253	prsA	APL_0775	-	ribose-phosphate pyrophosphokinase
766	 44.06	0	892484..893341	-	285	126208254	ispE	APL_0776	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
767	 41.07	0	893351..893983	-	210	126208255	lolB	APL_0777	-	outer membrane lipoprotein LolB
768	 43.17	0	894112..895860	-	582	126208256	msbA	APL_0778	-	lipid transporter ATP-binding/permease protein
769	 44.40	0	895965..896651	-	228	126208257	-	APL_0779	-	hypothetical protein
770	 41.11	0	896661..897020	-	119	126208258	-	APL_0780	-	hypothetical protein
771	 43.11	0	897087..899009	-	640	126208259	-	APL_0781	-	putative ATP-dependent helicase
772	 45.03	0	899489..902317	-	942	126208260	uvrA	APL_0782	-	UvrABC system protein A
773	 47.62	+1	902468..902992	+	174	126208261	ssb	APL_0783	-	single-strand DNA-binding protein
774	 33.21	-2	903161..903979	-	272	126208262	-	APL_0784	-	hypothetical protein
775	 27.01	-2	904303..906294	-	663	126208263	-	APL_0785	-	hypothetical protein
776	 29.02	-2	906716..907804	-	362	126208264	-	APL_0786	-	hypothetical protein
777	 39.65	0	907871..909199	-	442	126208265	-	APL_0787	-	putative ATPase
778	 45.38	0	909512..910399	-	295	126208266	-	APL_0788	-	transcriptional regulatory protein
779	 45.03	0	910504..911478	+	324	126208267	-	APL_0789	-	dioxygenase
780	 40.49	0	913424..914191	-	255	126208268	-	APL_0792	-	hypothetical protein
781	 42.77	0	914274..915311	-	345	126208269	sapD	APL_0793	-	peptide transport system ATP-binding protein SapD
782	 39.19	0	915325..916212	-	295	126208270	sapC	APL_0794	-	peptide transport system permease protein SapC
783	 40.29	0	916202..917164	-	320	126208271	sapB	APL_0795	-	peptide transport system permease protein SapB
784	 40.99	0	917164..918861	-	565	126208272	sapA	APL_0796	-	peptide transport periplasmic protein SapA precursor
785	 42.38	0	918871..920019	-	382	126208273	tyrR	APL_0797	-	transcriptional regulatory protein TyrR
786	 41.03	0	920224..920808	+	194	126208274	gmhA	APL_0798	-	phosphoheptose isomerase
787	 30.56	-2	921300..921911	+	203	126208275	-	APL_0799	-	hypothetical protein
788	 42.64	0	922121..923731	-	536	126208276	pckA	APL_0800	-	phosphoenolpyruvate carboxykinase
789	 42.29	0	924004..924282	+	92	126208277	ftsB	APL_0801	-	cell division protein FtsB-like protein
790	 41.48	0	924298..924984	+	228	126208278	ispD	APL_0802	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
791	 44.44	0	924981..925457	+	158	126208279	ispF	APL_0803	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
792	 42.94	0	926126..928102	-	658	126208280	-	APL_0804	-	hypothetical protein
793	 40.81	0	928140..928928	-	262	126208281	-	APL_0805	-	hypothetical protein
794	 39.56	0	929073..929297	+	74	126208282	xseB	APL_0806	-	exodeoxyribonuclease VII small subunit
795	 42.84	0	929306..930199	+	297	126208283	ispA	APL_0807	-	geranyltranstransferase
796	 37.39	-1	930283..930627	-	114	126208284	-	APL_0808	-	hypothetical protein
797	 41.45	0	930728..932230	-	500	126208285	lysS	APL_0809	-	lysyl-tRNA synthetase
798	 42.48	0	932365..933840	-	491	126208286	cafA	APL_0810	-	ribonuclease G
799	 40.59	0	934070..935833	+	587	126208287	-	APL_0811	-	hypothetical protein
800	 36.74	-1	935866..938478	-	870	126208288	res	APL_0812	-	type III restriction enzyme
801	 36.15	-1	938618..940465	-	615	126208289	mod	APL_0813	-	type III restriction-modification system methyltransferase
802	 41.43	0	940675..941637	+	320	126208290	-	APL_0814	-	hypothetical protein
803	 39.29	0	941783..942118	+	111	126208291	-	APL_0815	-	hypothetical protein
804	 44.63	0	942185..943282	-	365	126208292	mltA	APL_0816	-	murein transglycosylase A
805	 42.85	0	943691..945151	+	486	126208293	xseA	APL_0817	-	exodeoxyribonuclease VII large subunit
806	 36.96	-1	945527..945940	-	137	126208294	-	APL_0818	-	transthyretin-like periplasmic protein
807	 39.76	0	946139..947149	+	336	126208295	purR	APL_0819	-	DNA-binding transcriptional repressor PurR
808	 43.95	0	947172..947774	+	200	126208296	-	APL_0820	-	putative membrane-associated protein
809	 42.95	0	947874..950306	-	810	126208297	gyrB	APL_0821	-	DNA gyrase subunit B
810	 43.31	0	950519..951400	-	293	126208298	ubiA	APL_0822	-	4-hydroxybenzoate octaprenyltransferase
811	 41.60	0	951400..952161	-	253	126208299	glpR	APL_0823	-	glycerol-3-phosphate regulon repressor
812	 42.03	0	952229..953596	-	455	126208300	purB	APL_0824	-	adenylosuccinate lyase
813	 39.65	0	953653..954285	-	210	126208301	-	APL_0825	-	hypothetical protein
814	 41.49	0	954450..956117	-	555	126208302	cydC	APL_0826	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
815	 43.37	0	956128..957870	-	580	126208303	cydD	APL_0827	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
816	 43.74	0	958030..961989	-	1319	126208304	-	APL_0828	-	hypothetical protein
817	 42.69	0	962050..963876	-	608	126208305	-	APL_0829	-	hypothetical protein
818	 44.64	0	963892..964740	-	282	126208306	-	APL_0830	-	hypothetical protein
819	 43.33	0	964740..965939	-	399	126208307	-	APL_0831	-	membrane-bound metallopeptidase
820	 40.35	0	966118..966801	+	227	126208308	gpmA	APL_0832	-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
821	 40.25	0	966885..967520	-	211	126208309	-	APL_0833	-	hypothetical protein
822	 37.77	-1	967638..968291	+	217	126208310	udk	APL_0834	-	uridine kinase
823	 44.27	0	968300..968884	+	194	126208311	dcd	APL_0835	-	deoxycytidine triphosphate deaminase
824	 36.04	-1	968953..969507	-	184	126208312	-	APL_0836	-	putative transcriptional regulator
825	 42.09	0	969648..970709	+	353	126208313	-	APL_0837	-	hypothetical protein
826	 41.54	0	970713..973454	+	913	126208314	-	APL_0838	-	ABC transporter ATP-binding protein
827	 41.42	0	973456..974580	+	374	126208315	-	APL_0839	-	inner membrane transport permease
828	 41.00	0	974597..975991	+	464	126208316	-	APL_0840	-	outer membrane protein
829	 44.79	0	976069..977517	-	482	126208317	pntB	APL_0841	-	pyridine nucleotide transhydrogenase
830	 45.61	+1	977528..979066	-	512	126208318	pntA	APL_0842	-	NAD(P) transhydrogenase subunit alpha
831	 42.90	0	979271..980002	+	243	126208319	-	APL_0843	-	tRNA/rRNA methyltransferase
832	 40.36	0	980048..980887	-	279	126208320	queF	APL_0844	-	7-cyano-7-deazaguanine reductase
833	 42.12	0	980900..981445	-	181	126208321	gmhB	APL_0845	-	D,D-heptose 1,7-bisphosphate phosphatase
834	 42.46	0	981448..981918	-	156	126208322	bcp	APL_0846	-	thioredoxin-dependent thiol peroxidase
835	 43.78	0	981993..983150	-	385	126208323	-	APL_0847	-	coproporphyrinogen III oxidase
836	 43.87	0	983413..984987	+	524	126208324	-	APL_0848	-	putative ABC transporter periplasmic binding protein
837	 44.34	0	985086..986039	+	317	126208325	-	APL_0849	-	inner membrane ABC transporter permease
838	 45.90	+1	986039..988012	+	657	126208326	-	APL_0850	-	ABC transporter, ATP-binding/permease
839	 45.11	0	988016..988822	+	268	126208327	-	APL_0851	-	ABC transporter, ATP-binding subunit
840	 42.84	0	988874..990472	+	532	126208328	-	APL_0852	-	putative FAD flavoprotein oxidase
841	 41.11	0	990534..991691	-	385	126208329	-	APL_0853	-	methionine synthase II (cobalamin-independent)
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.