IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
703	 42.67	0	821887..822336	-	149	126208191	-	APL_0711	-	transcriptional regulator NrdR
704	 41.25	0	822336..822575	-	79	126208192	-	APL_0712	-	hypothetical protein
705	 43.31	0	822613..824076	-	487	126208193	dnaB	APL_0713	-	replicative DNA helicase
706	 39.27	0	824256..825164	+	302	126208194	-	APL_0714	-	ABC transport system periplasmic protein
707	 41.56	0	825251..826198	+	315	126208195	-	APL_0715	-	ABC transport system permease protein
708	 38.00	-1	826261..827139	+	292	126208196	-	APL_0716	-	iron(III) ABC transporter, permease protein
709	 38.87	0	827141..827899	+	252	126208197	-	APL_0717	-	iron(III) ABC transporter, ATP-binding protein
710	 38.18	-1	828088..828768	+	226	126208198	-	APL_0718	-	hypothetical protein
711	 43.86	0	828778..830040	+	420	126208199	-	APL_0719	-	putative phosphate permease
712	 40.92	0	830104..830709	+	201	126208200	-	APL_0720	-	hypothetical protein
713	 37.72	-1	830763..830990	-	75	126208201	-	APL_0721	-	hypothetical protein
714	 43.60	0	830997..831512	-	171	126208202	-	APL_0722	-	hypothetical protein
715	 44.04	0	831585..832733	-	382	126208203	tgt	APL_0723	-	queuine tRNA-ribosyltransferase
716	 39.97	0	833056..833628	+	190	126208204	-	APL_0724	-	hypothetical protein
717	 39.06	0	833751..833942	+	63	126208205	cspD	APL_0725	-	cold shock-like protein CspD
718	 42.26	0	834060..834776	+	238	126208206	-	APL_0726	-	carbonic anhydrase
719	 43.65	0	835093..836817	+	574	126208207	ilvI	APL_0727	-	acetolactate synthase 3 catalytic subunit
720	 41.06	0	836810..837301	+	163	126208208	ilvH	APL_0728	-	acetolactate synthase 3 regulatory subunit
721	 44.44	0	837571..838920	-	449	126208209	pmbA	APL_0729	-	antibiotic maturation factor
722	 39.55	0	839028..839558	+	176	126208210	-	APL_0730	-	hypothetical protein
723	 37.10	-1	839603..839974	+	123	126208211	-	APL_0731	-	hypothetical protein
724	 44.50	0	840034..840606	+	190	126208212	ubiX	APL_0732	-	aromatic acid decarboxylase
725	 43.28	0	840609..841322	+	237	126208213	-	APL_0733	-	hypothetical protein
726	 42.22	0	841369..841818	+	149	126208214	-	APL_0734	-	hypothetical protein
727	 46.79	+1	841891..842202	-	103	126208215	-	APL_0735	-	translation initiation factor Sui1
728	 43.15	0	842282..842974	-	230	126208216	pyrF	APL_0736	-	orotidine 5'-phosphate decarboxylase
729	 38.26	0	842999..844195	-	398	126208217	-	APL_0737	-	hypothetical protein
730	 32.99	-2	844195..844485	-	96	126208218	-	APL_0738	-	hypothetical protein
731	 37.59	-1	844554..844835	-	93	126208219	ihfB	APL_0739	-	integration host factor beta-subunit
732	 40.06	0	844909..846573	-	554	126208220	rpsA	APL_0740	-	30S ribosomal protein S1
733	 42.52	0	846670..847344	-	224	126208221	cmkA	APL_0741	-	cytidylate kinase
734	 42.25	0	847374..848405	-	343	126208222	degS	APL_0742	-	protease DegS precursor
735	 39.76	0	848654..848980	-	108	126208223	secG	APL_0743	-	preprotein translocase subunit SecG
736	 43.24	0	849112..851049	-	645	126208224	topB2	APL_0744	-	DNA topoisomerase III
737	 49.10	+1	852612..853442	-	276	126208225	mepA	APL_0747	-	penicillin-insensitive murein endopeptidase
738	 47.28	+1	853537..854619	-	360	126208226	aroC	APL_0748	-	chorismate synthase
739	 40.68	0	854641..857949	-	1102	126208227	-	APL_0749	-	potassium efflux protein KefA
740	 40.21	0	857967..861311	-	1114	126208228	-	APL_0750	-	potassium efflux protein KefA
741	 44.51	0	861292..862722	-	476	126208229	menE	APL_0751	-	O-succinylbenzoic acid--CoA ligase
742	 40.82	0	862740..863300	-	186	126208230	seqA	APL_0752	-	replication initiation regulator SeqA
743	 43.00	0	863424..864209	+	261	126208231	-	APL_0753	-	putative esterase/lipase
744	 41.46	0	864217..864942	+	241	126208232	yecO	APL_0754	-	S-adenosyl-L-methionine-dependent methyltransferase
745	 44.74	0	865141..865929	+	262	126208233	fabI	APL_0755	-	enoyl-[acyl-carrier-protein] reductase (NADH)
746	 42.65	0	866377..866655	+	92	126208234	-	APL_0756	-	hypothetical protein
747	 43.75	0	866787..868763	+	658	126208235	rnb	APL_0757	-	exoribonuclease II
748	 41.13	0	868838..869209	+	123	126208236	-	APL_0758	-	hypothetical protein
749	 42.79	0	869206..869892	+	228	126208237	-	APL_0759	-	hypothetical protein
750	 42.68	0	869917..870729	+	270	126208238	apaH	APL_0760	-	diadenosine tetraphosphatase
751	 38.68	0	870918..871160	-	80	126208239	-	APL_0761	-	hypothetical protein
752	 39.15	0	871328..872083	+	251	126208240	-	APL_0762	-	hypothetical protein
753	 37.85	-1	872142..873203	+	353	126208241	perM	APL_0763	-	putative permease perM-like protein
754	 42.90	0	873233..874162	+	309	126208242	-	APL_0764	-	hypothetical protein
755	 43.74	0	874210..875295	+	361	126208243	queA	APL_0765	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
756	 39.78	0	875330..877624	-	764	126208244	rec2	APL_0766	-	recombination protein 2
757	 42.72	0	877724..878938	-	404	126208245	-	APL_0767	-	serine/threonine transporter SstT
758	 42.15	0	879187..879549	+	120	126208246	dgkA	APL_0768	-	diacylglycerol kinase
759	 40.21	0	879630..881273	+	547	126208247	ushA	APL_0769	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
760	 29.19	-2	881728..882330	+	200	126208248	-	APL_0770	-	hypothetical protein
761	 43.44	0	883954..885378	-	474	126208249	lpdA	APL_0771	-	dihydrolipoamide dehydrogenase
762	 44.92	0	885474..887372	-	632	126208250	aceF	APL_0772	-	dihydrolipoamide acetyltransferase
763	 42.75	0	887432..890086	-	884	126208251	aceE	APL_0773	-	pyruvate dehydrogenase subunit E1
764	 42.46	0	890441..891448	-	335	126208252	pyrD	APL_0774	-	dihydroorotate dehydrogenase 2
765	 46.06	+1	891522..892472	-	316	126208253	prsA	APL_0775	-	ribose-phosphate pyrophosphokinase
766	 44.06	0	892484..893341	-	285	126208254	ispE	APL_0776	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
767	 41.07	0	893351..893983	-	210	126208255	lolB	APL_0777	-	outer membrane lipoprotein LolB
768	 43.17	0	894112..895860	-	582	126208256	msbA	APL_0778	-	lipid transporter ATP-binding/permease protein
769	 44.40	0	895965..896651	-	228	126208257	-	APL_0779	-	hypothetical protein
770	 41.11	0	896661..897020	-	119	126208258	-	APL_0780	-	hypothetical protein
771	 43.11	0	897087..899009	-	640	126208259	-	APL_0781	-	putative ATP-dependent helicase
772	 45.03	0	899489..902317	-	942	126208260	uvrA	APL_0782	-	UvrABC system protein A
773	 47.62	+1	902468..902992	+	174	126208261	ssb	APL_0783	-	single-strand DNA-binding protein
774	 33.21	-2	903161..903979	-	272	126208262	-	APL_0784	-	hypothetical protein
775	 27.01	-2	904303..906294	-	663	126208263	-	APL_0785	-	hypothetical protein
776	 29.02	-2	906716..907804	-	362	126208264	-	APL_0786	-	hypothetical protein
777	 39.65	0	907871..909199	-	442	126208265	-	APL_0787	-	putative ATPase
778	 45.38	0	909512..910399	-	295	126208266	-	APL_0788	-	transcriptional regulatory protein
779	 45.03	0	910504..911478	+	324	126208267	-	APL_0789	-	dioxygenase
780	 40.49	0	913424..914191	-	255	126208268	-	APL_0792	-	hypothetical protein
781	 42.77	0	914274..915311	-	345	126208269	sapD	APL_0793	-	peptide transport system ATP-binding protein SapD
782	 39.19	0	915325..916212	-	295	126208270	sapC	APL_0794	-	peptide transport system permease protein SapC
783	 40.29	0	916202..917164	-	320	126208271	sapB	APL_0795	-	peptide transport system permease protein SapB
784	 40.99	0	917164..918861	-	565	126208272	sapA	APL_0796	-	peptide transport periplasmic protein SapA precursor
785	 42.38	0	918871..920019	-	382	126208273	tyrR	APL_0797	-	transcriptional regulatory protein TyrR
786	 41.03	0	920224..920808	+	194	126208274	gmhA	APL_0798	-	phosphoheptose isomerase
787	 30.56	-2	921300..921911	+	203	126208275	-	APL_0799	-	hypothetical protein
788	 42.64	0	922121..923731	-	536	126208276	pckA	APL_0800	-	phosphoenolpyruvate carboxykinase
789	 42.29	0	924004..924282	+	92	126208277	ftsB	APL_0801	-	cell division protein FtsB-like protein
790	 41.48	0	924298..924984	+	228	126208278	ispD	APL_0802	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
791	 44.44	0	924981..925457	+	158	126208279	ispF	APL_0803	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
792	 42.94	0	926126..928102	-	658	126208280	-	APL_0804	-	hypothetical protein
793	 40.81	0	928140..928928	-	262	126208281	-	APL_0805	-	hypothetical protein
794	 39.56	0	929073..929297	+	74	126208282	xseB	APL_0806	-	exodeoxyribonuclease VII small subunit
795	 42.84	0	929306..930199	+	297	126208283	ispA	APL_0807	-	geranyltranstransferase
796	 37.39	-1	930283..930627	-	114	126208284	-	APL_0808	-	hypothetical protein
797	 41.45	0	930728..932230	-	500	126208285	lysS	APL_0809	-	lysyl-tRNA synthetase
798	 42.48	0	932365..933840	-	491	126208286	cafA	APL_0810	-	ribonuclease G
799	 40.59	0	934070..935833	+	587	126208287	-	APL_0811	-	hypothetical protein
800	 36.74	-1	935866..938478	-	870	126208288	res	APL_0812	-	type III restriction enzyme
801	 36.15	-1	938618..940465	-	615	126208289	mod	APL_0813	-	type III restriction-modification system methyltransferase
802	 41.43	0	940675..941637	+	320	126208290	-	APL_0814	-	hypothetical protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.