IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
562	 39.12	0	640596..642149	-	517	126208050	-	APL_0568	-	hypothetical protein
563	 43.98	0	642261..642974	+	237	126208051	pyrH	APL_0569	-	uridylate kinase
564	 39.43	0	643158..643715	+	185	126208052	frr	APL_0570	-	ribosome recycling factor
565	 39.04	0	643793..645193	-	466	126208053	gntR	APL_0571	-	HTH-type transcriptional regulator
566	 46.40	+1	645280..646167	+	295	126208054	pdxS	APL_0572	-	pyridoxine biosynthesis protein
567	 43.92	0	646167..646742	+	191	126208055	pdxT	APL_0573	-	glutamine amidotransferase subunit PdxT
568	 42.46	0	646816..647385	-	189	126208056	-	APL_0574	-	tRNA-specific adenosine deaminase
569	 47.53	+1	647423..649282	-	619	126208057	deaD	APL_0575	-	cold-shock DEAD box protein A-like protein
570	 40.98	0	649504..650445	-	313	126208058	nlpI	APL_0576	-	lipoprotein NlpI
571	 45.76	+1	650506..652653	-	715	126208059	pnp	APL_0577	-	polynucleotide phosphorylase/polyadenylase
572	 44.95	0	652954..655200	+	748	126208060	parC	APL_0578	-	DNA topoisomerase IV subunit A
573	 43.69	0	655340..656671	+	443	126208061	mukF	APL_0579	-	condesin subunit F
574	 45.94	+1	656751..657464	+	237	126208062	mukE	APL_0580	-	condesin subunit E
575	 44.33	0	657485..661975	+	1496	126208063	mukB	APL_0581	-	cell division protein MukB
576	 42.18	0	662052..663227	+	391	126208064	sotB	APL_0582	-	sugar efflux transporter
577	 40.34	0	663279..665018	-	579	126208065	-	APL_0583	-	hypothetical protein
578	 38.74	0	665021..665242	-	73	126208066	-	APL_0584	-	hypothetical protein
579	 38.34	0	665452..666030	+	192	126208067	-	APL_0585	-	hypothetical protein
580	 43.86	0	666063..667268	+	401	126208068	-	APL_0586	-	putative RND efflux membrane fusion protein
581	 43.21	0	667281..670400	+	1039	126208069	acrB	APL_0587	-	acriflavine resistance protein
582	 43.67	0	670619..671992	+	457	126208070	glmU	APL_0588	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
583	 38.05	-1	672091..672408	-	105	126208071	-	APL_0589	-	hypothetical protein
584	 39.61	0	672412..673032	-	206	126208072	-	APL_0590	-	hypothetical protein
585	 42.19	0	673326..674984	+	552	126208073	pgm	APL_0591	-	phosphoglucomutase/phosphomannomutase
586	 43.45	0	675066..676637	-	523	126208074	guaA	APL_0592	-	bifunctional GMP synthase/glutamine amidotransferase protein
587	 44.81	0	677056..678519	-	487	126208075	guaB	APL_0593	-	inositol-5-monophosphate dehydrogenase
588	 45.93	+1	678772..679398	+	208	126208076	rrmJ	APL_0594	-	23S rRNA methyltransferase J
589	 45.35	0	679502..681424	+	640	126208077	ftsH	APL_0595	-	cell division protease FtsH-like protein
590	 40.66	0	681662..682876	+	404	126208078	tyrP-A	APL_0596	-	tyrosine-specific transport protein 1
591	 43.43	0	682972..684189	+	405	126208079	tyrP-B	APL_0597	-	tyrosine-specific transport protein 2
592	 41.44	0	684296..686848	+	850	126208080	glnD	APL_0598	-	PII uridylyl-transferase
593	 40.35	0	686881..687279	-	132	126208081	-	APL_0599	-	hypothetical protein
594	 41.72	0	687584..688012	+	142	126208082	rplM	APL_0600	-	50S ribosomal protein L13
595	 44.19	0	688029..688424	+	131	126208083	rpsI	APL_0601	-	30S ribosomal protein S9
596	 40.74	0	688546..689328	+	260	126208084	-	APL_0602	-	hypothetical protein
597	 41.39	0	689328..689873	+	181	126208085	-	APL_0603	-	hypothetical protein
598	 41.34	0	689899..690822	+	307	126208086	fieF	APL_0604	-	cation-efflux pump FieF
599	 42.67	0	690803..691573	+	256	126208087	-	APL_0605	-	hypothetical protein
600	 42.53	0	691672..692997	+	441	126208088	-	APL_0606	-	symporter protein
601	 42.08	0	693099..693761	-	220	126208089	nfnB	APL_0607	-	putative NAD(P)H nitroreductase
602	 41.84	0	694038..695024	+	328	126208090	pheS	APL_0608	-	phenylalanyl-tRNA synthetase subunit alpha
603	 43.55	0	695123..697510	+	795	126208091	pheT	APL_0609	-	phenylalanyl-tRNA synthetase subunit beta
604	 42.42	0	697528..697824	+	98	126208092	ihfA	APL_0610	-	integration host factor, alpha chain
605	 43.43	0	697885..698409	+	174	126208093	-	APL_0611	-	putative lipoprotein
606	 38.57	0	698682..699464	-	260	126208094	-	APL_0612	-	putative transposase
607	 40.78	0	699506..700015	-	169	126208095	-	APL_0613	-	transposase
608	 40.42	0	700088..700807	-	239	126208096	bioD	APL_0614	-	dithiobiotin synthetase
609	 35.52	-1	700861..702051	-	396	126208097	mlc	APL_0615	-	putative transcriptional repressor of carbohydrate metabolism
610	 40.50	0	702230..703345	+	371	126208098	rnd	APL_0616	-	ribonuclease D
611	 37.68	-1	703430..703912	+	160	126208099	lrp	APL_0617	-	leucine-responsive transcriptional regulator
612	 44.34	0	703924..706794	+	956	126208100	ftsK	APL_0618	-	DNA translocase FtsK
613	 45.02	0	706979..707842	+	287	126208101	-	APL_0619	-	hypothetical protein
614	 44.88	0	707965..709038	+	357	126208102	aroG	APL_0620	-	phospho-2-dehydro-3-deoxyheptonate aldolase
615	 43.00	0	709142..709834	+	230	126208103	-	APL_0621	-	putative M22-like peptidase
616	 40.21	0	710274..710855	-	193	126208104	tdk	APL_0622	-	thymidine kinase
617	 32.88	-2	710915..711133	-	72	126208105	-	APL_0623	-	hypothetical protein
618	 46.55	+1	711318..712316	+	332	126208106	glpX	APL_0624	-	fructose 1,6-bisphosphatase II
619	 41.86	0	712379..713152	-	257	126208107	-	APL_0625	-	hypothetical protein
620	 40.20	0	713244..715166	-	640	126208108	macB	APL_0626	-	putative macrolide-specific ABC-type efflux carrier
621	 40.45	0	715311..716195	-	294	126208109	-	APL_0627	-	two-component sensor protein
622	 35.76	-1	716424..716711	-	95	126208110	-	APL_0628	-	hypothetical protein
623	 38.96	0	716776..717504	-	242	126208111	cpxR	APL_0629	-	transcriptional regulatory protein CpxR
624	 40.67	0	717629..718228	-	199	126208112	mazG	APL_0630	-	pyrophosphatase
625	 42.73	0	718567..719460	+	297	126208113	accD	APL_0631	-	acetyl-CoA carboxylase subunit beta
626	 41.53	0	719517..720821	+	434	126208114	folC	APL_0632	-	folylpolyglutamate synthase/dihydrofolate synthase
627	 45.40	0	721030..722595	+	521	126208115	hsdM3	APL_0633	-	putative type I modification enzyme
628	 34.86	-1	722739..723980	+	413	126208116	hsdS3	APL_0634	-	putative type I restriction system specificity protein
629	 28.48	-2	724156..724608	+	150	126208117	-	APL_0635	-	hypothetical protein
630	 44.76	0	724743..727883	+	1046	126208118	hsdR3	APL_0636	-	putative type I site-specific restriction-modification system, restriction subunit
631	 40.26	0	728268..728729	+	153	126208119	-	APL_0637	-	hypothetical protein
632	 43.45	0	728746..730227	+	493	126208120	nusA	APL_0638	-	transcription elongation factor NusA
633	 46.20	+1	730249..732774	+	841	126208121	infB	APL_0639	-	translation initiation factor IF-2
634	 40.62	0	732946..733329	+	127	126208122	rbfA	APL_0640	-	ribosome-binding factor A
635	 42.92	0	733330..734247	+	305	126208123	truB	APL_0641	-	tRNA pseudouridine synthase B
636	 43.62	0	734293..735381	+	362	126208124	mltB	APL_0642	-	membrane-bound lytic murein transglycosylase B
637	 35.48	-1	735510..735695	+	61	126208125	-	APL_0643	-	hypothetical protein
638	 44.93	0	735814..737952	-	712	126208126	pta	APL_0644	-	phosphate acetyltransferase
639	 42.60	0	738008..739216	-	402	126208127	ackA	APL_0645	-	acetate kinase
640	 42.64	0	739513..741489	+	658	126208128	cpdB	APL_0646	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
641	 36.03	-1	742439..743515	-	358	126208129	ompP2	APL_0649	-	Outer membrane protein P2 precursor (OMP P2)
642	 36.02	-1	743985..744506	+	173	126208130	-	APL_0650	-	hypothetical protein
643	 40.09	0	744538..745425	-	295	126208131	galU	APL_0651	-	UTP--glucose-1-phosphate uridylyltransferase
644	 42.02	0	745538..746896	-	452	126208132	manB	APL_0652	-	phosphomannomutase
645	 38.46	0	746931..747125	-	64	126208133	csrA	APL_0653	-	carbon storage regulator CsrA
646	 42.67	0	747203..749827	-	874	126208134	alaS	APL_0654	-	alanyl-tRNA synthetase
647	 40.61	0	750053..750478	-	141	126208135	uspA	APL_0655	-	universal stress protein A-like protein
648	 40.62	0	750742..751509	+	255	126208136	hlyX	APL_0656	-	fumarate/nitrate reduction transcriptional regulator
649	 40.53	0	751608..752024	-	138	126208137	sspB	APL_0657	-	ClpXP protease specificity-enhancing factor
650	 40.16	0	752024..752668	-	214	126208138	sspA	APL_0658	-	stringent starvation protein A-like protein
651	 46.06	+1	752887..753381	+	164	126208139	purE	APL_0659	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
652	 42.86	0	753391..754356	+	321	126208140	ansB	APL_0660	-	L-asparaginase
653	 43.89	0	754466..755554	+	362	126208141	purK	APL_0661	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
654	 43.78	0	755686..756882	+	398	126208142	aspC	APL_0662	-	aromatic amino acid aminotransferase
655	 43.20	0	757061..758347	-	428	126208143	pepP	APL_0663	-	Xaa-Pro aminopeptidase
656	 38.81	0	758756..759979	-	407	126208144	-	APL_0664	-	hypothetical protein
657	 37.95	-1	760115..760504	-	129	126208145	-	APL_0665	-	hypothetical protein
658	 40.23	0	760505..760765	-	86	126208146	-	APL_0666	-	hypothetical protein
659	 45.94	+1	760899..762920	-	673	126208147	uvrB	APL_0667	-	excinuclease ABC subunit B
660	 40.84	0	763097..763909	+	270	126208148	-	APL_0668	-	hypothetical protein
661	 43.83	0	763924..765114	+	396	126208149	-	APL_0669	-	putative iron dependent peroxidase
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.