IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4	 46.60	+1	4139..4711	-	190	126207492	sodC	APL_0004	-	superoxide dismutase [Cu-Zn] precursor
5	 44.03	0	4894..6006	+	370	126207493	asd	APL_0005	-	aspartate-semialdehyde dehydrogenase
6	 43.32	0	6134..7264	-	376	126207494	ompP2A	APL_0006	-	outer membrane protein P2
7	 43.99	0	7413..8594	+	393	126207495	lpxB	APL_0007	-	lipid-A-disaccharide synthase
8	 43.56	0	8624..9679	+	351	126207496	sohB	APL_0008	-	putative periplasmic protease
9	 44.44	0	9914..10372	+	152	126207497	-	APL_0009	-	cell division protein MraZ
10	 44.27	0	10398..11339	+	313	126207498	mraW	APL_0010	-	S-adenosyl-methyltransferase MraW
11	 40.32	0	11352..11666	+	104	126207499	ftsL	APL_0011	-	cell division protein FtsL
12	 45.08	0	11670..13730	+	686	126207500	ftsI	APL_0012	-	peptidoglycan synthetase FtsI
13	 45.38	0	13754..15256	+	500	126207501	murE	APL_0013	-	UDP-N-acetylmuramyl-tripeptide synthetase
14	 44.73	0	15471..16865	+	464	126207502	murF	APL_0014	-	UDP-MurNAc-pentapeptide synthetase
15	 43.86	0	16962..18044	+	360	126207503	mraY	APL_0015	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
16	 44.77	0	18128..19438	+	436	126207504	murD	APL_0016	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
17	 44.02	0	19440..20618	+	392	126207505	ftsW	APL_0017	-	cell division protein FtsW
18	 48.58	+1	20773..21828	+	351	126207506	murG	APL_0018	-	N-acetylglucosaminyl transferase
19	 46.99	+1	21880..23307	+	475	126207507	murC	APL_0019	-	UDP-N-acetylmuramate--L-alanine ligase
20	 44.96	0	23415..24326	+	303	126207508	ddl	APL_0020	-	D-alanine--D-alanine ligase
21	 42.20	0	24467..25120	+	217	126207509	ftsQ	APL_0021	-	cell division protein FtsQ
22	 43.14	0	25146..26420	+	424	126207510	ftsA	APL_0022	-	cell division protein FtsA
23	 47.11	+1	26459..27670	+	403	126207511	ftsZ	APL_0023	-	cell division protein FtsZ
24	 39.74	0	27704..28624	+	306	126207512	lpxC	APL_0024	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
25	 41.64	0	28786..30459	+	557	126207513	recN	APL_0025	-	DNA repair protein RecN
26	 43.87	0	30601..32004	-	467	126207514	-	APL_0026	-	ABC transporter ATP-binding protein
27	 43.00	0	32004..32789	-	261	126207515	-	APL_0027	-	nickel transport system permease protein
28	 45.89	+1	32792..33739	-	315	126207516	-	APL_0028	-	ABC transporter permease protein
29	 39.94	0	33833..35407	-	524	126207517	-	APL_0029	-	ABC transporter periplasmic protein
30	 44.15	0	35601..37181	-	526	126207518	prfC	APL_0030	-	peptide chain release factor 3
31	 35.68	-1	37364..37831	+	155	126207519	-	APL_0031	-	integral membrane protein
32	 40.50	0	37878..38393	+	171	126207520	yhaH	APL_0032	-	hypothetical protein
33	 42.74	0	38520..39104	+	194	126207521	pth	APL_0033	-	peptidyl-tRNA hydrolase
34	 43.86	0	39213..40304	+	363	126207522	engD	APL_0034	-	translation-associated GTPase
35	 39.50	0	40376..40813	+	145	126207523	-	APL_0035	-	putative protein-S-isoprenylcysteine methyltransferase
36	 38.04	-1	40863..41138	-	91	126207524	-	APL_0036	-	hypothetical protein
37	 48.39	+1	41169..41633	-	154	126207525	slyB	APL_0037	-	outer membrane lipoprotein
38	 37.52	-1	41660..42256	-	198	126207526	-	APL_0038	-	hypothetical protein
39	 43.35	0	42435..44081	+	548	126207527	argS	APL_0039	-	arginyl-tRNA synthetase
40	 46.34	+1	44225..45400	+	391	126207528	obgE	APL_0040	-	GTPase ObgE
41	 39.38	0	45475..46086	+	203	126207529	-	APL_0041	-	hypothetical protein
42	 46.10	+1	46186..46929	-	247	126207530	rlmB	APL_0042	-	23S rRNA (guanosine-2'-O-)-methyltransferase
43	 39.85	0	47008..48372	-	454	126207531	pssA	APL_0043	-	phosphatidylserine synthase
44	 43.34	0	48524..51340	-	938	126207532	ileS	APL_0044	-	isoleucyl-tRNA synthetase
45	 42.89	0	51401..52363	-	320	126207533	ribF	APL_0045	-	riboflavin biosynthesis protein
46	 40.20	0	52696..53976	+	426	126207534	nadR	APL_0046	-	nicotinamide-nucleotide adenylyltransferase
47	 44.35	0	53973..54671	+	232	126207535	-	APL_0047	-	diadenosine tetraphosphatase
48	 41.28	0	54844..55560	+	238	126207536	arcA	APL_0048	-	two-component response regulator
49	 41.62	0	55612..56130	+	172	126207537	-	APL_0049	-	hypothetical protein
50	 30.67	-2	56285..57073	-	262	126207538	-	APL_0050	-	hypothetical protein
51	 45.62	+1	57311..57847	-	178	126207539	-	APL_0051	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
52	 43.68	0	57902..58597	+	231	126207540	-	APL_0052	-	hypothetical protein
53	 42.53	0	58930..60636	+	568	126207541	typA	APL_0053	-	GTP-binding protein
54	 39.39	0	60795..61058	+	87	126207542	grxA	APL_0054	-	glutaredoxin 1
55	 46.44	+1	61124..61840	-	238	126207543	rph	APL_0055	-	ribonuclease PH
56	 41.20	0	62044..62907	+	287	126207544	yicC	APL_0056	-	hypothetical protein
57	 41.78	0	62916..63803	+	295	126207545	-	APL_0057	-	hypothetical protein
58	 41.38	0	63853..64113	-	86	126207546	yfhL	APL_0058	-	putative ferredoxin
59	 40.32	0	64259..64888	-	209	126207547	narP	APL_0059	-	nitrate/nitrite response regulator protein
60	 43.20	0	65092..67230	+	712	126207548	-	APL_0060	-	23S rRNA m(2)G2445 methyltransferase
61	 40.62	0	67288..67767	+	159	126207549	yibK	APL_0061	-	putative tRNA/rRNA methyltransferase
62	 40.51	0	67907..68854	-	315	126207550	mipB	APL_0062	-	transaldolase B
63	 38.91	0	75007..76602	+	531	126207551	dppA	APL_0063	-	periplasmic dipeptide transport protein
64	 39.89	0	76770..78371	+	533	126207552	dppA	APL_0064	-	periplasmic dipeptide transport protein
65	 41.29	0	78499..79503	+	334	126207553	dppB	APL_0065	-	dipeptide transport system permease protein DppB
66	 45.45	0	79581..80471	+	296	126207554	dppC	APL_0066	-	dipeptide transport system permease protein DppC
67	 46.61	+1	80482..81468	+	328	126207555	dppD	APL_0067	-	dipeptide transporter ATP-binding subunit
68	 44.75	0	81481..82470	+	329	126207556	dppF	APL_0068	-	dipeptide transporter ATP-binding subunit
69	 38.69	0	82543..82953	-	136	126207557	psiE	APL_0069	-	phosphate-starvation-inducible protein PsiE
70	 40.44	0	83031..83663	-	210	126207558	-	APL_0070	-	hypothetical protein
71	 44.06	0	83718..84062	-	114	126207559	-	APL_0071	-	hypothetical protein
72	 46.24	+1	84149..85186	-	345	126207560	ilvE	APL_0072	-	branched-chain amino acid aminotransferase
73	 41.59	0	85329..85655	-	108	126207561	ydhD	APL_0073	-	monothiol glutaredoxin-like protein
74	 44.59	0	85727..86392	-	221	126207562	recR	APL_0074	-	recombination protein RecR
75	 46.97	+1	86403..86732	-	109	126207563	ybaB	APL_0075	-	uncharacterized protein YbaB
76	 47.87	+1	86901..87767	-	288	126207564	tonB2	APL_0076	-	protein TonB2
77	 37.69	-1	87777..88166	-	129	126207565	exbD2	APL_0077	-	biopolymer transport protein ExbD2
78	 39.29	0	88211..88663	-	150	126207566	exbB2	APL_0078	-	biopolymer transport protein ExbB2
79	 45.57	+1	88851..89177	+	108	126207567	glpE	APL_0079	-	thiosulfate sulfurtransferase GlpE
80	 39.36	0	89221..90066	+	281	126207568	-	APL_0080	-	putative thioredoxin-like protein
81	 48.28	+1	90141..90548	-	135	126207569	dhaM	APL_0081	-	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM
82	 44.66	0	90557..91183	-	208	126207570	dhaL	APL_0082	-	dihydroxyacetone kinase ADP-binding subunit
83	 45.19	0	91185..92255	-	356	126207571	dhaK	APL_0083	-	dihydroxyacetone kinase subunit DhaK
84	 44.65	0	92425..93378	+	317	126207572	trxB	APL_0084	-	thioredoxin reductase
85	 46.35	+1	93486..94238	+	250	126207573	kdsB	APL_0085	-	3-deoxy-manno-octulosonate cytidylyltransferase
86	 41.08	0	94362..94787	+	141	126207574	-	APL_0086	-	hypothetical protein
87	 43.71	0	94861..95631	-	256	126207575	nudC	APL_0087	-	NADH pyrophosphatase
88	 40.95	0	95649..96344	-	231	126207576	rluE	APL_0088	-	ribosomal large subunit pseudouridine synthase E
89	 42.86	0	96348..97166	-	272	126207577	rhaT	APL_0089	-	hypothetical protein
90	 37.85	-1	97196..97660	-	154	126207578	-	APL_0090	-	hypothetical protein
91	 41.59	0	97683..99014	-	443	126207579	pepQ	APL_0091	-	proline dipeptidase
92	 42.50	0	99038..99277	+	79	126207580	sirA	APL_0092	-	sulfurtransferase
93	 41.50	0	99327..99767	-	146	126207581	-	APL_0093	-	hypothetical protein
94	 41.87	0	99769..100389	-	206	126207582	engB	APL_0094	-	GTPase EngB
95	 43.17	0	100684..101100	-	138	126207583	-	APL_0095	-	hypothetical protein
96	 48.13	+1	101138..101968	-	276	126207584	-	APL_0096	-	zinc transporter family protein ZIP
97	 47.33	+1	102119..103954	-	611	126207585	ilvD	APL_0097	-	dihydroxy-acid dehydratase
98	 38.36	0	104072..104290	-	72	126207586	ilvM	APL_0098	-	acetolactate synthase 2 regulatory subunit
99	 45.93	+1	104311..105810	-	499	126207587	ilvG	APL_0099	-	acetolactate synthase isozyme II large subunit (AHAS-II)
100	 42.04	0	106390..107871	+	493	126207588	nrfA	APL_0100	-	cytochrome c nitrite reductase
101	 43.98	0	107892..108539	+	215	126207589	nrfB	APL_0101	-	cytochrome c-type protein NrfB
102	 46.17	+1	108539..109216	+	225	126207590	nrfC	APL_0102	-	nitrate reductase
103	 41.49	0	109216..110184	+	322	126207591	nrfD	APL_0103	-	nitrite reductase transmembrane protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.