IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
317	 42.59	0	358114..358653	-	179	126207805	dsbB	APL_0321	-	disulfide bond formation protein B
318	 40.92	0	358750..360291	-	513	126207806	nhaB	APL_0322	-	sodium/proton antiporter
319	 39.37	0	360456..361184	+	242	126207807	fadR	APL_0323	-	fatty acid metabolism regulator
320	 41.46	0	361193..362263	+	356	126207808	phoH	APL_0324	-	PhoH-like protein
321	 42.64	0	362302..363279	-	325	126207809	-	APL_0325	-	hypothetical protein
322	 44.81	0	363351..364256	-	301	126207810	prfB	APL_0326	-	peptide chain release factor 2
323	 46.30	+1	364716..365633	+	305	126207811	selD	APL_0327	-	selenide, water dikinase
324	 40.79	0	365638..366093	+	151	126207812	mutT	APL_0328	-	MutT/NUDIX family NTP pyrophosphohydrolase
325	 44.17	0	366103..367302	+	399	126207813	-	APL_0329	-	2-octaprenyl-6-methoxyphenol hydroxylase
326	 35.22	-1	367332..367808	-	158	126207814	-	APL_0330	-	hypothetical protein
327	 46.17	+1	367865..368542	-	225	126207815	hlp	APL_0331	-	putative lipoprotein
328	 40.00	0	368623..369102	-	159	126207816	hlpB	APL_0332	-	lipoprotein HlpB
329	 43.54	0	369238..370383	-	381	126207817	visC	APL_0333	-	putative monooxygenase family protein
330	 42.04	0	370507..371367	-	286	126207818	-	APL_0334	-	hypothetical protein
331	 42.30	0	371386..371898	-	170	126207819	ptsN	APL_0335	-	PTS system, nitrogen regulatory IIA-like protein
332	 44.77	0	371948..372673	-	241	126207820	yhgB	APL_0336	-	putative ABC transporter ATP-binding protein
333	 37.30	-1	372683..373186	-	167	126207821	-	APL_0337	-	hypothetical protein
334	 37.86	-1	373211..373807	-	198	126207822	-	APL_0338	-	hypothetical protein
335	 46.59	+1	373967..376606	-	879	126207823	pepC	APL_0339	-	phosphoenolpyruvate carboxylase
336	 47.26	+1	376821..377660	-	279	126207824	-	APL_0340	-	hypothetical protein
337	 41.11	0	377657..378106	-	149	126207825	-	APL_0341	-	hypothetical protein
338	 42.07	0	378173..378733	-	186	126207826	-	APL_0342	-	hypothetical protein
339	 45.97	+1	378909..380570	-	553	126207827	fruA	APL_0343	-	PTS system fructose-specific EIIBC component
340	 47.78	+1	380652..381599	-	315	126207828	fruK	APL_0344	-	1-phosphofructokinase
341	 45.53	+1	381614..383122	-	502	126207829	fruB	APL_0345	-	bifunctional fructose-specific PTS IIA/HPr protein
342	 43.23	0	383383..385716	+	777	126207830	glgB	APL_0346	-	glycogen branching enzyme
343	 42.45	0	385723..387708	+	661	126207831	glgX	APL_0347	-	glycogen operon protein GlgX
344	 43.20	0	387724..389040	+	438	126207832	glgC	APL_0348	-	glucose-1-phosphate adenylyltransferase
345	 43.28	0	389143..390579	+	478	126207833	glgA	APL_0349	-	glycogen synthase
346	 43.59	0	390609..393113	+	834	126207834	glgP	APL_0350	-	glycogen phosphorylase
347	 44.12	0	393225..393641	-	138	126207835	ndk	APL_0351	-	nucleoside diphosphate kinase
348	 41.07	0	393700..395727	-	675	126207836	metG	APL_0352	-	methionyl-tRNA synthetase
349	 46.00	+1	395906..396868	+	320	126207837	menC	APL_0353	-	O-succinylbenzoate synthase
350	 42.71	0	397182..397874	+	230	126207838	rsuA	APL_0354	-	ribosomal small subunit pseudouridine synthase A
351	 43.61	0	397874..399070	+	398	126207839	proP	APL_0355	-	bicyclomycin/multidrug efflux system
352	 43.93	0	399116..399502	-	128	126207840	-	APL_0356	-	hypothetical protein
353	 45.09	0	399573..400142	-	189	126207841	-	APL_0357	-	hypothetical protein
354	 39.26	0	400200..401042	+	280	126207842	nfo	APL_0358	-	endonuclease IV
355	 44.89	0	401163..401759	+	198	126207843	nlpC	APL_0359	-	putative lipoprotein
356	 38.38	0	401808..402263	-	151	126207844	impA	APL_0360	-	hypothetical protein
357	 40.83	0	402489..402875	-	128	126207845	grcA	APL_0361	-	autonomous glycyl radical cofactor GrcA
358	 41.15	0	403081..403758	+	225	126207846	ung	APL_0362	-	uracil-DNA glycosylase
359	 28.06	-2	403856..404728	-	290	126207847	-	APL_0363	-	hypothetical protein
360	 36.94	-1	404823..407621	-	932	126207848	ssa1	APL_0364	-	serotype-specific antigen 1 precursor
361	 44.90	0	407842..411741	-	1299	126207849	hrpA	APL_0365	-	ATP-dependent RNA helicase HrpA
362	 46.14	+1	411911..412363	-	150	126207850	-	APL_0366	-	hypothetical protein
363	 46.23	+1	412560..413156	-	198	126207851	grpE	APL_0367	-	heat shock protein (HSP-70 cofactor)
364	 39.80	0	413401..414483	+	360	126207852	potD2	APL_0368	-	spermidine/putrescine-binding periplasmic protein 1 precursor
365	 42.53	0	414627..416018	+	463	126207853	norM	APL_0369	-	putative multidrug resistance protein NorM
366	 41.56	0	416034..419642	+	1202	126207854	recB	APL_0370	-	exodeoxyribonuclease V beta chain
367	 43.12	0	419720..421231	-	503	126207855	lnt	APL_0371	-	apolipoprotein N-acyltransferase
368	 43.62	0	421313..422206	-	297	126207856	corC	APL_0372	-	magnesium and cobalt efflux protein
369	 40.63	0	422376..422978	+	200	126207857	-	APL_0373	-	hypothetical protein
370	 47.64	+1	423214..423996	+	260	126207858	glpF	APL_0374	-	glycerol uptake facilitator protein
371	 45.77	+1	424031..425542	+	503	126207859	glpK	APL_0375	-	glycerol kinase
372	 42.47	0	425663..428071	-	802	126207860	lon	APL_0376	-	ATP-dependent protease La
373	 43.91	0	428217..429662	-	481	126207861	glpT	APL_0377	-	glycerol-3-phosphate transporter
374	 40.22	0	429865..430953	-	362	126207862	glpQ	APL_0378	-	glycerophosphodiester phosphodiesterase
375	 46.56	+1	431205..432890	+	561	126207863	glpA	APL_0379	-	sn-glycerol-3-phosphate dehydrogenase subunit A
376	 43.12	0	432880..434166	+	428	126207864	glpB	APL_0380	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
377	 40.31	0	434163..435437	+	424	126207865	glpC	APL_0381	-	sn-glycerol-3-phosphate dehydrogenase subunit C
378	 44.04	0	435609..436841	+	410	126207866	ribD	APL_0382	-	riboflavin biosynthesis protein
379	 40.59	0	436964..437611	+	215	126207867	ribE	APL_0383	-	riboflavin synthase subunit alpha
380	 41.87	0	437672..438877	+	401	126207868	ribA	APL_0384	-	riboflavin biosynthesis protein
381	 40.91	0	438988..439449	+	153	126207869	ribH	APL_0385	-	6,7-dimethyl-8-ribityllumazine synthase
382	 43.15	0	439538..440026	-	162	126207870	greB	APL_0386	-	transcription elongation factor GreB
383	 44.87	0	440036..440971	-	311	126207871	kpsF	APL_0387	-	arabinose-5-phosphate isomerase
384	 44.32	0	441099..442391	-	430	126207872	pepB	APL_0388	-	aminopeptidase B
385	 43.50	0	442506..443321	-	271	126207873	ompP4	APL_0389	-	lipoprotein E precursor
386	 41.85	0	443494..444432	+	312	126207874	-	APL_0390	-	hypothetical protein
387	 43.57	0	444512..445693	-	393	126207875	macA	APL_0391	-	macrolide-specific efflux protein
388	 41.30	0	445790..446605	-	271	126207876	-	APL_0392	-	hypothetical protein
389	 42.93	0	447202..448743	+	513	126207877	leuA	APL_0393	-	2-isopropylmalate synthase
390	 41.28	0	449086..449664	+	192	126207878	rpoE	APL_0394	-	RNA polymerase sigma factor RpoE
391	 41.83	0	449684..450307	+	207	126207879	rseA	APL_0395	-	putative sigma-E factor negative regulatory protein
392	 38.93	0	450532..450960	+	142	126207880	rseC	APL_0396	-	putative sigma-E factor regulatory protein
393	 41.31	0	450972..452663	+	563	126207881	lcfA	APL_0397	-	long-chain-fatty-acid--CoA ligase
394	 42.90	0	452730..453356	+	208	126207882	upp	APL_0398	-	uracil phosphoribosyltransferase
395	 42.30	0	453463..454332	-	289	126207883	ksgA	APL_0399	-	dimethyladenosine transferase
396	 41.22	0	454398..455348	-	316	126207884	surA	APL_0400	-	peptidyl-prolyl cis-trans isomerase SurA
397	 41.85	0	455429..455968	-	179	126207885	pyrR	APL_0401	-	pyrimidine regulatory protein PyrR
398	 45.00	0	455984..457414	-	476	126207886	hldE	APL_0402	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
399	 43.59	0	457528..459048	-	506	126207887	engA	APL_0403	-	GTP-binding protein EngA
400	 42.79	0	459206..460516	-	436	126207888	hemA	APL_0404	-	glutamyl-tRNA reductase
401	 43.61	0	460794..463001	+	735	126207889	relA	APL_0405	-	GTP pyrophosphokinase
402	 42.82	0	463075..464265	+	396	126207890	dxr	APL_0406	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
403	 44.65	0	464325..465119	-	264	126207891	lpxA	APL_0407	-	UDP-N-acetylglucosamine acyltransferase
404	 39.57	0	465147..465611	-	154	126207892	fabZ	APL_0408	-	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
405	 43.47	0	465680..466705	-	341	126207893	lpxD	APL_0409	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
406	 40.77	0	466705..467511	-	268	126207894	-	APL_0410	-	hypothetical protein
407	 41.52	0	467627..470008	-	793	126207895	D15	APL_0411	-	protective surface antigen D15 precursor
408	 40.87	0	470070..471383	-	437	126207896	ecfE	APL_0412	-	putative zinc metalloprotease
409	 42.87	0	471390..472259	-	289	126207897	cdsA	APL_0413	-	phosphatidate cytidylyltransferase
410	 42.44	0	472284..472997	-	237	126207898	uppS	APL_0414	-	undecaprenyl pyrophosphate synthetase
411	 43.22	0	473169..473876	-	235	126207899	gloB	APL_0415	-	putative hydroxyacylglutathione hydrolase
412	 44.44	0	473935..474852	-	305	126207900	-	APL_0416	-	N-acetyl-D-glucosamine kinase
413	 42.55	0	474855..475559	-	234	126207901	pgpB	APL_0417	-	phosphatidylglycerophosphatase B
414	 38.81	0	475651..476052	-	133	126207902	-	APL_0418	-	hypothetical protein
415	 42.29	0	476090..476848	+	252	126207903	lgtF	APL_0419	-	UDP-glucose--lipooligosaccharide glucosyltransferase
416	 40.64	0	476952..477731	-	259	126207904	pbpG	APL_0420	-	penicillin-binding protein 7 precursor
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.