IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
261	 43.48	0	290420..291109	-	229	126207749	modB	APL_0261	-	molybdate ABC transporter permease protein
262	 40.71	0	291169..291927	-	252	126207750	modA	APL_0262	-	molybdate-binding periplasmic protein precursor
263	 42.13	0	292023..292784	-	253	126207751	-	APL_0263	-	putative ABC transport system permease
264	 39.93	0	292788..293696	-	302	126207752	-	APL_0264	-	putative ABC transporter ATP-binding protein
265	 44.07	0	293696..295762	-	688	126207753	dnaX	APL_0265	-	DNA polymerase III subunits gamma and tau
266	 41.85	0	295811..296350	-	179	126207754	apt	APL_0266	-	adenine phosphoribosyltransferase
267	 35.55	-1	296551..297183	+	210	126207755	-	APL_0267	-	hypothetical protein
268	 41.87	0	297183..297545	+	120	126207756	-	APL_0268	-	putative translation initiation inhibitor
269	 40.46	0	297556..298650	+	364	126207757	thrCA	APL_0269	-	putative threonine synthase
270	 41.46	0	298665..299156	+	163	126207758	-	APL_0270	-	hypothetical protein
271	 43.25	0	299267..300022	-	251	126207759	-	APL_0271	-	putative chelated iron transport system ATP-binding protein
272	 40.36	0	300024..300920	-	298	126207760	yfeA	APL_0272	-	iron (chelated) ABC transporter, periplasmic-binding protein
273	 40.18	0	300987..301322	-	111	126207761	-	APL_0273	-	putative dissimilatory sulfite reductase
274	 42.04	0	301375..302040	-	221	126207762	-	APL_0274	-	hypothetical protein
275	 40.76	0	302222..302773	+	183	126207763	pgsA	APL_0275	-	phosphatidylglycerophosphate synthase
276	 42.31	0	302893..304863	+	656	126207764	frpB	APL_0276	-	iron-regulated outer membrane protein B
277	 41.73	0	305016..306848	+	610	126207765	uvrC	APL_0277	-	excinuclease ABC subunit C
278	 38.78	0	306917..307669	+	250	126207766	-	APL_0278	-	putative Mg-dependent deoxyribonuclease
279	 42.25	0	307806..309824	-	672	126207767	rep	APL_0279	-	ATP-dependent DNA helicase
280	 39.70	0	310158..311273	+	371	126207768	potA	APL_0280	-	putrescine/spermidine ABC transporter ATPase protein
281	 39.33	0	311260..312126	+	288	126207769	potB	APL_0281	-	spermidine/putrescine ABC transporter membrane protein
282	 38.19	-1	312153..312893	+	246	126207770	potC	APL_0282	-	spermidine/putrescine ABC transporter membrane protein
283	 40.26	0	313035..313640	+	201	126207771	ruvA	APL_0283	-	Holliday junction DNA helicase motor protein
284	 45.20	0	313779..314663	+	294	126207772	ruvB	APL_0284	-	Holliday junction DNA helicase B
285	 40.99	0	314720..315424	-	234	126207773	ubiG	APL_0285	-	3-demethylubiquinone-9 3-methyltransferase
286	 44.82	0	315604..318294	+	896	126207774	gyrA	APL_0286	-	DNA gyrase subunit A
287	 41.74	0	319940..320260	+	106	126207775	-	APL_0289	-	hypothetical protein
288	 31.14	-2	320427..321521	+	364	126207776	-	APL_0290	-	putative Type I restriction enzyme EcoR124II specificity protein
289	 36.87	-1	322648..325785	+	1045	126207777	-	APL_0293	-	putative type I site-specific restriction-modification system, R (restriction) subunit
290	 42.03	0	325804..327747	+	647	126207778	uupA	APL_0294	-	ABC transporter ATPase component
291	 42.61	0	327747..328511	+	254	126207779	-	APL_0295	-	hypothetical protein
292	 34.23	-2	328590..328922	-	110	126207780	-	APL_0296	-	hypothetical protein
293	 41.91	0	329378..330928	+	516	126207781	cydA	APL_0297	-	cytochrome oxidase subunit 1
294	 40.99	0	330942..332078	+	378	126207782	cydB	APL_0298	-	cytochrome oxidase subunit 2
295	 38.97	0	332646..333035	+	129	126207783	-	APL_0299	-	hypothetical protein
296	 39.79	0	333070..333750	+	226	126207784	tolQ	APL_0300	-	colicin transport protein TolQ
297	 39.91	0	333829..334269	+	146	126207785	tolR	APL_0301	-	colicin uptake protein TolR
298	 43.21	0	334285..335580	+	431	126207786	tolA	APL_0302	-	cell envelope integrity inner membrane protein TolA
299	 46.21	+1	335598..336878	+	426	126207787	tolB	APL_0303	-	translocation protein TolB precursor
300	 43.74	0	336904..337374	+	156	126207788	palA	APL_0304	-	outer membrane protein precursor PalA
301	 38.29	0	337552..338358	+	268	126207789	-	APL_0305	-	hypothetical protein
302	 43.32	0	338438..339298	+	286	126207790	djlA	APL_0306	-	DNA-J like membrane chaperone protein
303	 44.55	0	339383..340345	+	320	126207791	dusC	APL_0307	-	tRNA-dihydrouridine synthase C
304	 40.21	0	340397..341443	+	348	126207792	-	APL_0308	-	hypothetical protein
305	 43.56	0	341631..343547	-	638	126207793	yheS	APL_0309	-	putative ABC transporter ATP-binding protein YheS
306	 45.33	0	344138..345379	+	413	126207794	moeA	APL_0310	-	molybdopterin biosynthesis protein MoeA
307	 42.70	0	345389..346135	+	248	126207795	moeB	APL_0311	-	molybdopterin biosynthesis protein MoeB
308	 43.12	0	346529..347857	-	442	126207796	rumA	APL_0312	-	23S rRNA 5-methyluridine methyltransferase
309	 43.29	0	347915..349240	+	441	126207797	-	APL_0313	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
310	 43.26	0	349416..352325	+	969	126207798	hepA	APL_0314	-	ATP-dependent helicase HepA
311	 43.42	0	352395..353108	+	237	126207799	rluA	APL_0315	-	ribosomal large subunit pseudouridine synthase A
312	 41.71	0	353304..353852	-	182	126207800	ampD	APL_0316	-	N-acetyl-anhydromuranmyl-L-alanine amidase
313	 44.37	0	353973..354815	+	280	126207801	yhiR	APL_0317	-	hypothetical protein
314	 42.21	0	354902..355543	+	213	126207802	pyrE	APL_0318	-	orotate phosphoribosyltransferase
315	 43.16	0	355682..356770	+	362	126207803	-	APL_0319	-	hypothetical protein
316	 44.75	0	356847..358037	-	396	126207804	metC	APL_0320	-	cystathionine beta-lyase
317	 42.59	0	358114..358653	-	179	126207805	dsbB	APL_0321	-	disulfide bond formation protein B
318	 40.92	0	358750..360291	-	513	126207806	nhaB	APL_0322	-	sodium/proton antiporter
319	 39.37	0	360456..361184	+	242	126207807	fadR	APL_0323	-	fatty acid metabolism regulator
320	 41.46	0	361193..362263	+	356	126207808	phoH	APL_0324	-	PhoH-like protein
321	 42.64	0	362302..363279	-	325	126207809	-	APL_0325	-	hypothetical protein
322	 44.81	0	363351..364256	-	301	126207810	prfB	APL_0326	-	peptide chain release factor 2
323	 46.30	+1	364716..365633	+	305	126207811	selD	APL_0327	-	selenide, water dikinase
324	 40.79	0	365638..366093	+	151	126207812	mutT	APL_0328	-	MutT/NUDIX family NTP pyrophosphohydrolase
325	 44.17	0	366103..367302	+	399	126207813	-	APL_0329	-	2-octaprenyl-6-methoxyphenol hydroxylase
326	 35.22	-1	367332..367808	-	158	126207814	-	APL_0330	-	hypothetical protein
327	 46.17	+1	367865..368542	-	225	126207815	hlp	APL_0331	-	putative lipoprotein
328	 40.00	0	368623..369102	-	159	126207816	hlpB	APL_0332	-	lipoprotein HlpB
329	 43.54	0	369238..370383	-	381	126207817	visC	APL_0333	-	putative monooxygenase family protein
330	 42.04	0	370507..371367	-	286	126207818	-	APL_0334	-	hypothetical protein
331	 42.30	0	371386..371898	-	170	126207819	ptsN	APL_0335	-	PTS system, nitrogen regulatory IIA-like protein
332	 44.77	0	371948..372673	-	241	126207820	yhgB	APL_0336	-	putative ABC transporter ATP-binding protein
333	 37.30	-1	372683..373186	-	167	126207821	-	APL_0337	-	hypothetical protein
334	 37.86	-1	373211..373807	-	198	126207822	-	APL_0338	-	hypothetical protein
335	 46.59	+1	373967..376606	-	879	126207823	pepC	APL_0339	-	phosphoenolpyruvate carboxylase
336	 47.26	+1	376821..377660	-	279	126207824	-	APL_0340	-	hypothetical protein
337	 41.11	0	377657..378106	-	149	126207825	-	APL_0341	-	hypothetical protein
338	 42.07	0	378173..378733	-	186	126207826	-	APL_0342	-	hypothetical protein
339	 45.97	+1	378909..380570	-	553	126207827	fruA	APL_0343	-	PTS system fructose-specific EIIBC component
340	 47.78	+1	380652..381599	-	315	126207828	fruK	APL_0344	-	1-phosphofructokinase
341	 45.53	+1	381614..383122	-	502	126207829	fruB	APL_0345	-	bifunctional fructose-specific PTS IIA/HPr protein
342	 43.23	0	383383..385716	+	777	126207830	glgB	APL_0346	-	glycogen branching enzyme
343	 42.45	0	385723..387708	+	661	126207831	glgX	APL_0347	-	glycogen operon protein GlgX
344	 43.20	0	387724..389040	+	438	126207832	glgC	APL_0348	-	glucose-1-phosphate adenylyltransferase
345	 43.28	0	389143..390579	+	478	126207833	glgA	APL_0349	-	glycogen synthase
346	 43.59	0	390609..393113	+	834	126207834	glgP	APL_0350	-	glycogen phosphorylase
347	 44.12	0	393225..393641	-	138	126207835	ndk	APL_0351	-	nucleoside diphosphate kinase
348	 41.07	0	393700..395727	-	675	126207836	metG	APL_0352	-	methionyl-tRNA synthetase
349	 46.00	+1	395906..396868	+	320	126207837	menC	APL_0353	-	O-succinylbenzoate synthase
350	 42.71	0	397182..397874	+	230	126207838	rsuA	APL_0354	-	ribosomal small subunit pseudouridine synthase A
351	 43.61	0	397874..399070	+	398	126207839	proP	APL_0355	-	bicyclomycin/multidrug efflux system
352	 43.93	0	399116..399502	-	128	126207840	-	APL_0356	-	hypothetical protein
353	 45.09	0	399573..400142	-	189	126207841	-	APL_0357	-	hypothetical protein
354	 39.26	0	400200..401042	+	280	126207842	nfo	APL_0358	-	endonuclease IV
355	 44.89	0	401163..401759	+	198	126207843	nlpC	APL_0359	-	putative lipoprotein
356	 38.38	0	401808..402263	-	151	126207844	impA	APL_0360	-	hypothetical protein
357	 40.83	0	402489..402875	-	128	126207845	grcA	APL_0361	-	autonomous glycyl radical cofactor GrcA
358	 41.15	0	403081..403758	+	225	126207846	ung	APL_0362	-	uracil-DNA glycosylase
359	 28.06	-2	403856..404728	-	290	126207847	-	APL_0363	-	hypothetical protein
360	 36.94	-1	404823..407621	-	932	126207848	ssa1	APL_0364	-	serotype-specific antigen 1 precursor
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.