IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
218	 38.96	0	239830..241179	-	449	126207706	-	APL_0218	-	hypothetical protein
219	 44.36	0	241585..243516	+	643	126207707	thrS	APL_0219	-	threonyl-tRNA synthetase
220	 41.78	0	243658..244332	+	224	126207708	-	APL_0220	-	putative lipoprotein
221	 37.36	-1	244342..244689	+	115	126207709	-	APL_0221	-	hypothetical protein
222	 38.48	0	244701..245360	+	219	126207710	-	APL_0222	-	putative lipoprotein
223	 41.88	0	245638..246117	+	159	126207711	infC	APL_0223	-	translation initiation factor IF-3
224	 39.39	0	246366..246563	+	65	126207712	rpmI	APL_0224	-	50S ribosomal protein L35
225	 41.81	0	246631..246984	+	117	126207713	rplT	APL_0225	-	50S ribosomal protein L20
226	 35.94	-1	247033..247569	+	178	126207714	-	APL_0226	-	hypothetical protein
227	 44.90	0	247602..247895	+	97	126207715	-	APL_0227	-	hypothetical protein
228	 41.90	0	247952..249247	-	431	126207716	-	APL_0228	-	hypothetical protein
229	 42.86	0	249291..249941	-	216	126207717	rluA	APL_0229	-	RNA pseudouridine synthase
230	 41.86	0	249991..250623	+	210	126207718	gpmB	APL_0230	-	phosphoglycerate mutase/fructose-2, 6-bisphosphatase
231	 44.44	0	250690..251103	-	137	126207719	-	APL_0231	-	Holliday junction resolvase-like protein
232	 43.14	0	251156..251716	-	186	126207720	-	APL_0232	-	hypothetical protein
233	 43.99	0	251716..252447	-	243	126207721	-	APL_0233	-	hypothetical protein
234	 42.47	0	252622..253212	-	196	126207722	-	APL_0234	-	putative lipoprotein
235	 46.15	+1	253341..253652	+	103	126207723	bolA	APL_0235	-	stress-induced morphogen (activity unknown)
236	 38.93	0	254045..254419	-	124	126207724	-	APL_0236	-	putative lipoprotein
237	 34.95	-1	254439..254747	-	102	126207725	-	APL_0237	-	hypothetical protein
238	 39.45	0	254850..255176	+	108	126207726	-	APL_0238	-	hypothetical protein
239	 44.85	0	255285..258002	+	905	126207727	secA	APL_0239	-	preprotein translocase subunit SecA
240	 42.93	0	258132..259319	+	395	126207728	-	APL_0240	-	TPR repeat-containing protein
241	 43.86	0	259316..259714	+	132	126207729	mutT	APL_0241	-	mutator mutT protein
242	 45.40	0	259949..260893	+	314	126207730	argC	APL_0242	-	N-acetyl-gamma-glutamyl-phosphate reductase
243	 41.64	0	260923..261777	+	284	126207731	argB	APL_0243	-	acetylglutamate kinase
244	 43.91	0	261791..262972	+	393	126207732	argD	APL_0244	-	acetylornithine aminotransferase
245	 40.88	0	263186..264895	+	569	126207733	-	APL_0245	-	transferrin binding protein-like solute binding protein
246	 40.30	0	264910..267177	+	755	126207734	-	APL_0246	-	truncated transferrin-binding protein 1 precursor
247	 44.26	0	267745..269007	-	420	126207735	rho	APL_0247	-	transcription termination factor Rho
248	 44.58	0	269205..270155	-	316	126207736	cysK	APL_0248	-	cysteine synthase
249	 44.58	0	270367..271317	-	316	126207737	thrB	APL_0249	-	homoserine kinase
250	 43.87	0	271317..273773	-	818	126207738	thrA	APL_0250	-	bifunctional aspartokinase I/homeserine dehydrogenase I
251	 45.95	+1	274183..274824	+	213	126207739	sodA	APL_0251	-	manganese superoxide dismutase
252	 44.98	0	274912..276036	-	374	126207740	alr	APL_0252	-	alanine racemase
253	 38.60	0	276157..278094	+	645	126207741	recD	APL_0253	-	exodeoxyribonuclease V alpha chain
254	 40.14	0	284242..285696	-	484	126207742	pepD	APL_0254	-	aminoacyl-histidine dipeptidase
255	 43.25	0	285869..286342	+	157	126207743	gpt	APL_0255	-	xanthine-guanine phosphoribosyltransferase
256	 38.33	0	286426..287046	+	206	126207744	gmk	APL_0256	-	guanylate kinase
257	 40.00	0	287148..288542	+	464	126207745	-	APL_0257	-	outer membrane protein
258	 36.70	-1	288590..288886	-	98	126207746	-	APL_0258	-	hypothetical protein
259	 39.08	0	288879..289313	-	144	126207747	-	APL_0259	-	oligoketide cyclase/lipid transport protein
260	 40.44	0	289361..290416	-	351	126207748	modC	APL_0260	-	molybdate transporter ATP-binding protein
261	 43.48	0	290420..291109	-	229	126207749	modB	APL_0261	-	molybdate ABC transporter permease protein
262	 40.71	0	291169..291927	-	252	126207750	modA	APL_0262	-	molybdate-binding periplasmic protein precursor
263	 42.13	0	292023..292784	-	253	126207751	-	APL_0263	-	putative ABC transport system permease
264	 39.93	0	292788..293696	-	302	126207752	-	APL_0264	-	putative ABC transporter ATP-binding protein
265	 44.07	0	293696..295762	-	688	126207753	dnaX	APL_0265	-	DNA polymerase III subunits gamma and tau
266	 41.85	0	295811..296350	-	179	126207754	apt	APL_0266	-	adenine phosphoribosyltransferase
267	 35.55	-1	296551..297183	+	210	126207755	-	APL_0267	-	hypothetical protein
268	 41.87	0	297183..297545	+	120	126207756	-	APL_0268	-	putative translation initiation inhibitor
269	 40.46	0	297556..298650	+	364	126207757	thrCA	APL_0269	-	putative threonine synthase
270	 41.46	0	298665..299156	+	163	126207758	-	APL_0270	-	hypothetical protein
271	 43.25	0	299267..300022	-	251	126207759	-	APL_0271	-	putative chelated iron transport system ATP-binding protein
272	 40.36	0	300024..300920	-	298	126207760	yfeA	APL_0272	-	iron (chelated) ABC transporter, periplasmic-binding protein
273	 40.18	0	300987..301322	-	111	126207761	-	APL_0273	-	putative dissimilatory sulfite reductase
274	 42.04	0	301375..302040	-	221	126207762	-	APL_0274	-	hypothetical protein
275	 40.76	0	302222..302773	+	183	126207763	pgsA	APL_0275	-	phosphatidylglycerophosphate synthase
276	 42.31	0	302893..304863	+	656	126207764	frpB	APL_0276	-	iron-regulated outer membrane protein B
277	 41.73	0	305016..306848	+	610	126207765	uvrC	APL_0277	-	excinuclease ABC subunit C
278	 38.78	0	306917..307669	+	250	126207766	-	APL_0278	-	putative Mg-dependent deoxyribonuclease
279	 42.25	0	307806..309824	-	672	126207767	rep	APL_0279	-	ATP-dependent DNA helicase
280	 39.70	0	310158..311273	+	371	126207768	potA	APL_0280	-	putrescine/spermidine ABC transporter ATPase protein
281	 39.33	0	311260..312126	+	288	126207769	potB	APL_0281	-	spermidine/putrescine ABC transporter membrane protein
282	 38.19	-1	312153..312893	+	246	126207770	potC	APL_0282	-	spermidine/putrescine ABC transporter membrane protein
283	 40.26	0	313035..313640	+	201	126207771	ruvA	APL_0283	-	Holliday junction DNA helicase motor protein
284	 45.20	0	313779..314663	+	294	126207772	ruvB	APL_0284	-	Holliday junction DNA helicase B
285	 40.99	0	314720..315424	-	234	126207773	ubiG	APL_0285	-	3-demethylubiquinone-9 3-methyltransferase
286	 44.82	0	315604..318294	+	896	126207774	gyrA	APL_0286	-	DNA gyrase subunit A
287	 41.74	0	319940..320260	+	106	126207775	-	APL_0289	-	hypothetical protein
288	 31.14	-2	320427..321521	+	364	126207776	-	APL_0290	-	putative Type I restriction enzyme EcoR124II specificity protein
289	 36.87	-1	322648..325785	+	1045	126207777	-	APL_0293	-	putative type I site-specific restriction-modification system, R (restriction) subunit
290	 42.03	0	325804..327747	+	647	126207778	uupA	APL_0294	-	ABC transporter ATPase component
291	 42.61	0	327747..328511	+	254	126207779	-	APL_0295	-	hypothetical protein
292	 34.23	-2	328590..328922	-	110	126207780	-	APL_0296	-	hypothetical protein
293	 41.91	0	329378..330928	+	516	126207781	cydA	APL_0297	-	cytochrome oxidase subunit 1
294	 40.99	0	330942..332078	+	378	126207782	cydB	APL_0298	-	cytochrome oxidase subunit 2
295	 38.97	0	332646..333035	+	129	126207783	-	APL_0299	-	hypothetical protein
296	 39.79	0	333070..333750	+	226	126207784	tolQ	APL_0300	-	colicin transport protein TolQ
297	 39.91	0	333829..334269	+	146	126207785	tolR	APL_0301	-	colicin uptake protein TolR
298	 43.21	0	334285..335580	+	431	126207786	tolA	APL_0302	-	cell envelope integrity inner membrane protein TolA
299	 46.21	+1	335598..336878	+	426	126207787	tolB	APL_0303	-	translocation protein TolB precursor
300	 43.74	0	336904..337374	+	156	126207788	palA	APL_0304	-	outer membrane protein precursor PalA
301	 38.29	0	337552..338358	+	268	126207789	-	APL_0305	-	hypothetical protein
302	 43.32	0	338438..339298	+	286	126207790	djlA	APL_0306	-	DNA-J like membrane chaperone protein
303	 44.55	0	339383..340345	+	320	126207791	dusC	APL_0307	-	tRNA-dihydrouridine synthase C
304	 40.21	0	340397..341443	+	348	126207792	-	APL_0308	-	hypothetical protein
305	 43.56	0	341631..343547	-	638	126207793	yheS	APL_0309	-	putative ABC transporter ATP-binding protein YheS
306	 45.33	0	344138..345379	+	413	126207794	moeA	APL_0310	-	molybdopterin biosynthesis protein MoeA
307	 42.70	0	345389..346135	+	248	126207795	moeB	APL_0311	-	molybdopterin biosynthesis protein MoeB
308	 43.12	0	346529..347857	-	442	126207796	rumA	APL_0312	-	23S rRNA 5-methyluridine methyltransferase
309	 43.29	0	347915..349240	+	441	126207797	-	APL_0313	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
310	 43.26	0	349416..352325	+	969	126207798	hepA	APL_0314	-	ATP-dependent helicase HepA
311	 43.42	0	352395..353108	+	237	126207799	rluA	APL_0315	-	ribosomal large subunit pseudouridine synthase A
312	 41.71	0	353304..353852	-	182	126207800	ampD	APL_0316	-	N-acetyl-anhydromuranmyl-L-alanine amidase
313	 44.37	0	353973..354815	+	280	126207801	yhiR	APL_0317	-	hypothetical protein
314	 42.21	0	354902..355543	+	213	126207802	pyrE	APL_0318	-	orotate phosphoribosyltransferase
315	 43.16	0	355682..356770	+	362	126207803	-	APL_0319	-	hypothetical protein
316	 44.75	0	356847..358037	-	396	126207804	metC	APL_0320	-	cystathionine beta-lyase
317	 42.59	0	358114..358653	-	179	126207805	dsbB	APL_0321	-	disulfide bond formation protein B
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.