IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
172	 42.11	0	189971..190927	+	318	126207660	msbB	APL_0172	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
173	 43.47	0	190987..191973	-	328	126207661	-	APL_0173	-	hypothetical protein
174	 42.13	0	192415..193380	+	321	126207662	tbpA	APL_0174	-	thiamine-binding periplasmic protein precursor
175	 43.33	0	193587..194036	+	149	126207663	dksA	APL_0175	-	DnaK suppressor protein
176	 43.25	0	194179..195711	+	510	126207664	pcnB	APL_0176	-	putative poly(A) polymerase
177	 42.46	0	195781..196251	+	156	126207665	folK	APL_0177	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
178	 42.79	0	196289..196510	-	73	126207666	-	APL_0178	-	hypothetical protein
179	 42.79	0	196507..199203	-	898	126207667	-	APL_0179	-	hypothetical protein
180	 39.35	0	199236..200000	-	254	126207668	-	APL_0180	-	hypothetical protein
181	 43.63	0	200154..200561	+	135	126207669	gloA	APL_0181	-	lactoylglutathione lyase
182	 45.81	+1	200701..201357	+	218	126207670	dnaQ	APL_0182	-	ribonuclease T
183	 41.16	0	201448..202725	-	425	126207671	-	APL_0183	-	Mn2+/Fe2+ transporter
184	 42.78	0	203301..204422	-	373	126207672	tyrA	APL_0184	-	bifunctional chorismate mutase/prephenate dehydrogenase
185	 43.97	0	204535..205596	-	353	126207673	aroF	APL_0185	-	phospho-2-dehydro-3-deoxyheptonate aldolase
186	 43.17	0	205638..206684	-	348	126207674	-	APL_0186	-	ADP-heptose:LPS heptosyltransferase I
187	 43.96	0	206772..208211	-	479	126207675	pykA	APL_0187	-	pyruvate kinase
188	 44.72	0	208343..208834	+	163	126207676	sixA	APL_0188	-	phosphohistidine phosphatase
189	 43.09	0	209057..210019	+	320	126207677	dus	APL_0189	-	tRNA-dihydrouridine synthase B
190	 36.36	-1	210047..210343	+	98	126207678	fis	APL_0190	-	DNA-binding protein Fis
191	 40.40	0	210408..211766	-	452	126207679	-	APL_0191	-	SNF family Na+-dependent transporter
192	 41.49	0	211831..212664	-	277	126207680	dam	APL_0192	-	DNA adenine methylase
193	 45.23	0	212657..213757	-	366	126207681	aroB	APL_0193	-	3-dehydroquinate synthase
194	 44.06	0	213831..214352	-	173	126207682	aroK	APL_0194	-	shikimate kinase
195	 44.24	0	214614..217181	-	855	126207683	mrcA	APL_0195	-	membrane carboxypeptidase/penicillin-binding protein
196	 34.95	-1	217320..218000	+	226	126207684	-	APL_0196	-	hypothetical protein
197	 35.88	-1	218072..218503	+	143	126207685	-	APL_0197	-	hypothetical protein
198	 28.22	-2	218506..219033	+	175	126207686	-	APL_0198	-	hypothetical protein
199	 34.57	-1	219026..219430	+	134	126207687	-	APL_0199	-	hypothetical protein
200	 38.26	0	219442..220740	+	432	126207688	hofQ	APL_0200	-	type II secretory pathway, component HofQ
201	 40.58	0	220866..221279	+	137	126207689	nusB	APL_0201	-	transcription antitermination protein NusB
202	 43.51	0	221347..222309	+	320	126207690	thiL	APL_0202	-	thiamine-monophosphate kinase
203	 36.92	-1	222322..222795	+	157	126207691	pgpA	APL_0203	-	phosphatidylglycerophosphatase A
204	 34.93	-1	222804..223430	+	208	126207692	-	APL_0204	-	putative threonine efflux protein
205	 43.45	0	223489..224526	-	345	126207693	-	APL_0205	-	rRNA methyltransferase
206	 45.76	+1	224692..225504	+	270	126207694	suhB	APL_0206	-	inositol-1-monophosphatase (IMPase)
207	 45.47	0	225625..227478	+	617	126207695	dxs	APL_0207	-	1-deoxy-D-xylulose-5-phosphate synthase
208	 37.76	-1	227524..227862	-	112	126207696	-	APL_0208	-	putative transposase-like protein
209	 36.79	-1	227895..228212	-	105	126207697	-	APL_0209	-	putative transposase-like protein
210	 40.00	0	228224..228733	-	169	126207698	-	APL_0210	-	transposase and inactivated derivatives
211	 44.55	0	228822..230087	-	421	126207699	glyA	APL_0211	-	serine hydroxymethyltransferase
212	 42.91	0	230318..231205	-	295	126207700	pnnK	APL_0212	-	inorganic polyphosphate/ATP-NAD kinase
213	 40.98	0	231296..234643	-	1115	126207701	-	APL_0213	-	hypothetical protein
214	 39.39	0	234640..235596	-	318	126207702	-	APL_0214	-	hypothetical protein
215	 38.77	0	237305..237874	-	189	126207703	-	APL_0215	-	hypothetical protein
216	 39.26	0	237877..238872	-	331	126207704	-	APL_0216	-	hypothetical protein
217	 38.02	-1	238874..239833	-	319	126207705	-	APL_0217	-	hypothetical protein
218	 38.96	0	239830..241179	-	449	126207706	-	APL_0218	-	hypothetical protein
219	 44.36	0	241585..243516	+	643	126207707	thrS	APL_0219	-	threonyl-tRNA synthetase
220	 41.78	0	243658..244332	+	224	126207708	-	APL_0220	-	putative lipoprotein
221	 37.36	-1	244342..244689	+	115	126207709	-	APL_0221	-	hypothetical protein
222	 38.48	0	244701..245360	+	219	126207710	-	APL_0222	-	putative lipoprotein
223	 41.88	0	245638..246117	+	159	126207711	infC	APL_0223	-	translation initiation factor IF-3
224	 39.39	0	246366..246563	+	65	126207712	rpmI	APL_0224	-	50S ribosomal protein L35
225	 41.81	0	246631..246984	+	117	126207713	rplT	APL_0225	-	50S ribosomal protein L20
226	 35.94	-1	247033..247569	+	178	126207714	-	APL_0226	-	hypothetical protein
227	 44.90	0	247602..247895	+	97	126207715	-	APL_0227	-	hypothetical protein
228	 41.90	0	247952..249247	-	431	126207716	-	APL_0228	-	hypothetical protein
229	 42.86	0	249291..249941	-	216	126207717	rluA	APL_0229	-	RNA pseudouridine synthase
230	 41.86	0	249991..250623	+	210	126207718	gpmB	APL_0230	-	phosphoglycerate mutase/fructose-2, 6-bisphosphatase
231	 44.44	0	250690..251103	-	137	126207719	-	APL_0231	-	Holliday junction resolvase-like protein
232	 43.14	0	251156..251716	-	186	126207720	-	APL_0232	-	hypothetical protein
233	 43.99	0	251716..252447	-	243	126207721	-	APL_0233	-	hypothetical protein
234	 42.47	0	252622..253212	-	196	126207722	-	APL_0234	-	putative lipoprotein
235	 46.15	+1	253341..253652	+	103	126207723	bolA	APL_0235	-	stress-induced morphogen (activity unknown)
236	 38.93	0	254045..254419	-	124	126207724	-	APL_0236	-	putative lipoprotein
237	 34.95	-1	254439..254747	-	102	126207725	-	APL_0237	-	hypothetical protein
238	 39.45	0	254850..255176	+	108	126207726	-	APL_0238	-	hypothetical protein
239	 44.85	0	255285..258002	+	905	126207727	secA	APL_0239	-	preprotein translocase subunit SecA
240	 42.93	0	258132..259319	+	395	126207728	-	APL_0240	-	TPR repeat-containing protein
241	 43.86	0	259316..259714	+	132	126207729	mutT	APL_0241	-	mutator mutT protein
242	 45.40	0	259949..260893	+	314	126207730	argC	APL_0242	-	N-acetyl-gamma-glutamyl-phosphate reductase
243	 41.64	0	260923..261777	+	284	126207731	argB	APL_0243	-	acetylglutamate kinase
244	 43.91	0	261791..262972	+	393	126207732	argD	APL_0244	-	acetylornithine aminotransferase
245	 40.88	0	263186..264895	+	569	126207733	-	APL_0245	-	transferrin binding protein-like solute binding protein
246	 40.30	0	264910..267177	+	755	126207734	-	APL_0246	-	truncated transferrin-binding protein 1 precursor
247	 44.26	0	267745..269007	-	420	126207735	rho	APL_0247	-	transcription termination factor Rho
248	 44.58	0	269205..270155	-	316	126207736	cysK	APL_0248	-	cysteine synthase
249	 44.58	0	270367..271317	-	316	126207737	thrB	APL_0249	-	homoserine kinase
250	 43.87	0	271317..273773	-	818	126207738	thrA	APL_0250	-	bifunctional aspartokinase I/homeserine dehydrogenase I
251	 45.95	+1	274183..274824	+	213	126207739	sodA	APL_0251	-	manganese superoxide dismutase
252	 44.98	0	274912..276036	-	374	126207740	alr	APL_0252	-	alanine racemase
253	 38.60	0	276157..278094	+	645	126207741	recD	APL_0253	-	exodeoxyribonuclease V alpha chain
254	 40.14	0	284242..285696	-	484	126207742	pepD	APL_0254	-	aminoacyl-histidine dipeptidase
255	 43.25	0	285869..286342	+	157	126207743	gpt	APL_0255	-	xanthine-guanine phosphoribosyltransferase
256	 38.33	0	286426..287046	+	206	126207744	gmk	APL_0256	-	guanylate kinase
257	 40.00	0	287148..288542	+	464	126207745	-	APL_0257	-	outer membrane protein
258	 36.70	-1	288590..288886	-	98	126207746	-	APL_0258	-	hypothetical protein
259	 39.08	0	288879..289313	-	144	126207747	-	APL_0259	-	oligoketide cyclase/lipid transport protein
260	 40.44	0	289361..290416	-	351	126207748	modC	APL_0260	-	molybdate transporter ATP-binding protein
261	 43.48	0	290420..291109	-	229	126207749	modB	APL_0261	-	molybdate ABC transporter permease protein
262	 40.71	0	291169..291927	-	252	126207750	modA	APL_0262	-	molybdate-binding periplasmic protein precursor
263	 42.13	0	292023..292784	-	253	126207751	-	APL_0263	-	putative ABC transport system permease
264	 39.93	0	292788..293696	-	302	126207752	-	APL_0264	-	putative ABC transporter ATP-binding protein
265	 44.07	0	293696..295762	-	688	126207753	dnaX	APL_0265	-	DNA polymerase III subunits gamma and tau
266	 41.85	0	295811..296350	-	179	126207754	apt	APL_0266	-	adenine phosphoribosyltransferase
267	 35.55	-1	296551..297183	+	210	126207755	-	APL_0267	-	hypothetical protein
268	 41.87	0	297183..297545	+	120	126207756	-	APL_0268	-	putative translation initiation inhibitor
269	 40.46	0	297556..298650	+	364	126207757	thrCA	APL_0269	-	putative threonine synthase
270	 41.46	0	298665..299156	+	163	126207758	-	APL_0270	-	hypothetical protein
271	 43.25	0	299267..300022	-	251	126207759	-	APL_0271	-	putative chelated iron transport system ATP-binding protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.