IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1777	 40.89	0	2024484..2024867	+	127	126209265	-	APL_1801	-	hypothetical protein
1778	 27.41	-2	2025340..2025744	+	134	126209266	-	APL_1802	-	hypothetical protein
1779	 45.65	+1	2025782..2027851	+	689	126209267	glyS	APL_1803	-	glycyl-tRNA synthetase subunit beta
1780	 38.49	0	2027967..2028257	+	96	126209268	-	APL_1804	-	hypothetical protein
1781	 44.02	0	2028258..2029268	+	336	126209269	xerC	APL_1805	-	site-specific tyrosine recombinase XerC
1782	 38.46	0	2029272..2029661	-	129	126209270	-	APL_1806	-	hypothetical protein
1783	 46.45	+1	2029725..2030471	-	248	126209271	-	APL_1807	-	hypothetical protein
1784	 43.85	0	2030513..2031244	-	243	126209272	lpxH	APL_1808	-	UDP-2,3-diacylglucosamine hydrolase
1785	 41.33	0	2031277..2031801	-	174	126209273	-	APL_1809	-	hypothetical protein
1786	 41.95	0	2031836..2032624	-	262	126209274	-	APL_1810	-	putative Mg-dependent DNAse
1787	 36.33	-1	2033633..2034265	+	210	126209275	-	APL_1811	-	hypothetical protein
1788	 37.45	-1	2036534..2037310	-	258	126209276	macA	APL_1814	-	macrolide-specific efflux protein
1789	 31.40	-2	2037606..2038382	-	258	126209277	-	APL_1815	-	hypothetical protein
1790	 43.09	0	2038713..2039696	-	327	126209278	holB	APL_1816	-	DNA polymerase III subunit delta'
1791	 44.66	0	2039699..2040325	-	208	126209279	tdk	APL_1817	-	thymidylate kinase
1792	 41.84	0	2040329..2041363	-	344	126209280	-	APL_1818	-	hypothetical protein
1793	 37.18	-1	2041962..2042195	-	77	126209281	acpP	APL_1819	-	acyl carrier protein
1794	 46.81	+1	2042459..2043133	-	224	126209282	rpe	APL_1820	-	ribulose-phosphate 3-epimerase
1795	 42.59	0	2043355..2043624	+	89	126209283	rpmE2	APL_1821	-	50S ribosomal protein L31 type B
1796	 38.10	-1	2043638..2043763	+	41	126209284	rpmJ	APL_1822	-	50S ribosomal protein L36
1797	 44.78	0	2043868..2046270	-	800	126209285	pbpB	APL_1823	-	penicillin-binding protein 1B (PBP1b)
1798	 46.85	+1	2046349..2047206	-	285	126209286	menB	APL_1824	-	naphthoate synthase
1799	 46.46	+1	2047341..2049047	-	568	126209287	spoT	APL_1825	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp)ase)
1800	 44.57	0	2049150..2049425	-	91	126209288	rpoZ	APL_1826	-	DNA-directed RNA polymerase subunit omega
1801	 48.17	+1	2049552..2051633	-	693	126209289	recG	APL_1827	-	ATP-dependent DNA helicase recG
1802	 34.97	-1	2051757..2052122	-	121	126209290	-	APL_1828	-	PilT protein-like protein
1803	 36.11	-1	2052185..2052472	-	95	126209291	-	APL_1829	-	hypothetical protein
1804	 44.76	0	2052678..2054393	+	571	126209292	syp	APL_1830	-	prolyl-tRNA synthetase
1805	 37.11	-1	2054650..2055231	-	193	126209293	-	APL_1831	-	RNA polymerase sigma factor
1806	 43.89	0	2055320..2056276	+	318	126209294	-	APL_1832	-	putative sulfite oxidase subunit YedY
1807	 39.73	0	2056276..2056869	+	197	126209295	-	APL_1833	-	putative sulfite oxidase subunit YedZ
1808	 45.22	0	2056980..2057930	-	316	126209296	rpoH	APL_1834	-	RNA polymerase factor sigma-32
1809	 43.44	0	2058079..2059236	-	385	126209297	glpT	APL_1835	-	glycerol-3-phosphate transporter
1810	 24.76	-2	2059991..2060503	+	170	126209298	-	APL_1836	-	hypothetical protein
1811	 41.79	0	2061014..2062006	-	330	126209299	asnA	APL_1837	-	asparagine synthetase AsnA
1812	 38.74	0	2062188..2062649	+	153	126209300	asnC	APL_1838	-	DNA-binding transcriptional regulator AsnC
1813	 47.06	+1	2062838..2063602	+	254	126209301	udp	APL_1839	-	uridine phosphorylase
1814	 39.83	0	2063672..2064148	+	158	126209302	ubiC	APL_1840	-	4-hydroxybenzoate synthetase (chorismate lyase)
1815	 41.10	0	2064220..2065017	+	265	126209303	murI	APL_1841	-	glutamate racemase
1816	 41.31	0	2071381..2073147	-	588	126209304	cysI	APL_1842	-	sulfite reductase subunit beta
1817	 43.76	0	2073175..2074986	-	603	126209305	cysJ	APL_1843	-	sulfite reductase [NADPH] flavoprotein alpha-component (SIR-FP)
1818	 45.36	0	2075287..2076018	-	243	126209306	cysN	APL_1844	-	sulphate adenylate transferase subunit 1
1819	 45.28	0	2076271..2077065	+	264	126209307	sbp	APL_1845	-	sulfate-binding protein precursor
1820	 42.19	0	2077084..2077896	+	270	126209308	cysT	APL_1846	-	Sulfate transport system permease protein cysT
1821	 43.79	0	2077909..2078721	+	270	126209309	cysW	APL_1847	-	Sulfate transport system permease protein cysW
1822	 40.52	0	2078734..2079804	+	356	126209310	cysA	APL_1848	-	Sulfate/thiosulfate import ATP-binding protein cysA
1823	 49.65	+2	2079893..2081038	-	381	126209311	lldD	APL_1849	-	L-lactate dehydrogenase
1824	 42.48	0	2081220..2081984	-	254	126209312	birA	APL_1850	-	bifunctional biotin operon repressor/biotin synthetase BirA
1825	 43.38	0	2081993..2083027	-	344	126209313	murB	APL_1851	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1826	 42.74	0	2083177..2084271	-	364	126209314	ompA	APL_1852	-	Outer membrane protein P5 precursor (OMP P5)
1827	 42.51	0	2084660..2086141	-	493	126209315	ilvC	APL_1853	-	ketol-acid reductoisomerase
1828	 43.80	0	2086378..2087619	+	413	126209316	pqiA	APL_1854	-	hypothetical protein
1829	 42.96	0	2087796..2088896	+	366	126209317	-	APL_1855	-	hypothetical protein
1830	 40.68	0	2088868..2089221	+	117	126209318	-	APL_1856	-	hypothetical protein
1831	 36.19	-1	2089218..2089532	+	104	126209319	merP	APL_1857	-	MerP
1832	 43.90	0	2089760..2090005	-	81	126209320	-	APL_1858	-	hypothetical protein
1833	 44.11	0	2090045..2090944	-	299	126209321	-	APL_1859	-	NADH-dependent butanol dehydrogenase 1
1834	 44.41	0	2091060..2091962	+	300	126209322	lysR	APL_1860	-	LysR protein
1835	 44.48	0	2092166..2092990	+	274	126209323	dapD	APL_1861	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1836	 39.57	0	2093055..2093519	+	154	126209324	aroQ	APL_1862	-	3-dehydroquinate dehydratase
1837	 39.16	0	2093512..2094300	+	262	126209325	-	APL_1863	-	glycosyltransferase
1838	 47.96	+1	2094471..2095010	+	179	126209326	accB	APL_1864	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP)
1839	 44.57	0	2095087..2096430	+	447	126209327	accC	APL_1865	-	acetyl-CoA carboxylase biotin carboxylase subunit
1840	 42.31	0	2096473..2097564	-	363	126209328	mobAB	APL_1866	-	MobAB fusion protein
1841	 38.15	-1	2097651..2097920	+	89	126209329	-	APL_1867	-	hypothetical protein
1842	 38.81	0	2097964..2098602	+	212	126209330	dsbA	APL_1868	-	Thiol:disulfide interchange protein dsbA precursor
1843	 32.92	-2	2098821..2099300	-	159	126209331	-	APL_1869	-	hypothetical protein
1844	 47.62	+1	2099777..2100700	-	307	126209332	-	APL_1870	-	hypothetical protein
1845	 45.37	0	2100812..2101567	-	251	126209333	-	APL_1871	-	hypothetical protein
1846	 44.10	0	2101585..2102253	-	222	126209334	-	APL_1872	-	putative D-alanyl-D-alanine carboxypeptidase
1847	 44.53	0	2102272..2103405	-	377	126209335	dapE	APL_1873	-	succinyl-diaminopimelate desuccinylase
1848	 39.89	0	2103428..2103778	-	116	126209336	arsC	APL_1874	-	ArsC protein
1849	 39.94	0	2103986..2104696	+	236	126209337	-	APL_1875	-	hypothetical protein
1850	 42.55	0	2104747..2105592	-	281	126209338	folP	APL_1876	-	dihydropteroate synthase
1851	 45.55	+1	2105654..2106619	-	321	126209339	rluC	APL_1877	-	23S rRNA pseudouridylate synthase C
1852	 39.69	0	2109487..2110398	+	303	126209340	mscS	APL_1880	-	small-conductance mechanosensitive channel
1853	 41.82	0	2110594..2111772	+	392	126209341	-	APL_1881	-	hypothetical protein
1854	 46.08	+1	2111784..2112536	+	250	126209342	-	APL_1882	-	hypothetical protein
1855	 41.95	0	2112604..2115552	-	982	126209343	ptrA	APL_1883	-	protease 3 precursor
1856	 40.39	0	2115561..2118905	-	1114	126209344	recC	APL_1884	-	exodeoxyribonuclease V gamma chain
1857	 41.41	0	2119010..2119306	-	98	126209345	-	APL_1885	-	hypothetical protein
1858	 37.44	-1	2119296..2119952	-	218	126209346	-	APL_1886	-	hypothetical protein
1859	 39.14	0	2119962..2120495	-	177	126209347	pulJ	APL_1887	-	hypothetical protein
1860	 35.97	-1	2120620..2121150	-	176	126209348	pulG	APL_1888	-	hypothetical protein
1861	 44.63	0	2121238..2121768	-	176	126209349	fabA	APL_1889	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1862	 38.16	-1	2121879..2123516	-	545	126209350	lonH	APL_1890	-	putative protease La-like protein
1863	 36.47	-1	2123601..2124047	+	148	126209351	-	APL_1891	-	hypothetical protein
1864	 41.32	0	2124119..2124982	-	287	126209352	trpS	APL_1892	-	tryptophanyl-tRNA synthetase
1865	 41.59	0	2125286..2125951	-	221	126209353	gph	APL_1893	-	phosphoglycolate phosphatase
1866	 35.93	-1	2126121..2126351	-	76	126209354	-	APL_1894	-	hypothetical protein
1867	 44.15	0	2126510..2127304	-	264	126209355	lgt	APL_1895	-	prolipoprotein diacylglyceryl transferase
1868	 44.44	0	2127357..2128148	-	263	126209356	-	APL_1896	-	hypothetical protein
1869	 42.35	0	2128145..2128765	-	206	126209357	nudH	APL_1897	-	dinucleoside polyphosphate hydrolase
1870	 46.88	+1	2129311..2130078	-	255	126209358	ap2029	APL_1898	-	hypothetical protein
1871	 44.13	0	2130174..2130701	-	175	126209359	ppa	APL_1899	-	inorganic pyrophosphatase
1872	 43.88	0	2130775..2131485	+	236	126209360	-	APL_1900	-	hypothetical protein
1873	 46.79	+1	2131532..2132029	-	165	126209361	rraA	APL_1901	-	ribonuclease activity regulator protein RraA
1874	 46.32	+1	2132332..2133024	+	230	126209362	yrhG	APL_1902	-	putative transport protein YrhG
1875	 43.64	0	2133195..2134019	+	274	126209363	-	APL_1903	-	hypothetical protein
1876	 30.67	-2	2134138..2134926	-	262	126209364	-	APL_1904	-	hypothetical protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.