IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1737	 40.30	0	1997752..1998354	+	200	126209225	rplD	APL_1761	-	50S ribosomal protein L4
1738	 37.25	-1	1998351..1998656	+	101	126209226	rplW	APL_1762	-	50S ribosomal protein L23
1739	 45.13	0	1998677..1999498	+	273	126209227	rplB	APL_1763	-	50S ribosomal protein L2
1740	 43.84	0	1999526..1999801	+	91	126209228	rpsS	APL_1764	-	30S ribosomal protein S19
1741	 40.54	0	1999812..2000144	+	110	126209229	rplV	APL_1765	-	50S ribosomal protein L22
1742	 43.93	0	2000163..2000870	+	235	126209230	rpsC	APL_1766	-	30S ribosomal protein S3
1743	 44.53	0	2000884..2001294	+	136	126209231	rplP	APL_1767	-	50S ribosomal protein L16
1744	 40.10	0	2001294..2001485	+	63	126209232	rpmC	APL_1768	-	50S ribosomal protein L29
1745	 34.90	-1	2001485..2001739	+	84	126209233	rpsQ	APL_1769	-	30S ribosomal protein S17
1746	 36.54	-1	2002361..2002672	+	103	126209234	rplX	APL_1770	-	50S ribosomal protein L24
1747	 40.37	0	2002690..2003229	+	179	126209235	rplE	APL_1771	-	50S ribosomal protein L5
1748	 44.12	0	2003241..2003546	+	101	126209236	rpsN	APL_1772	-	30S ribosomal protein S14
1749	 40.97	0	2003583..2003975	+	130	126209237	rpsH	APL_1773	-	30S ribosomal protein S8
1750	 41.01	0	2003992..2004525	+	177	126209238	rplF	APL_1774	-	50S ribosomal protein L6
1751	 44.35	0	2004540..2004893	+	117	126209239	rplR	APL_1775	-	50S ribosomal protein L18
1752	 44.91	0	2004908..2005408	+	166	126209240	rpsE	APL_1776	-	30S ribosomal protein S5
1753	 36.11	-1	2005415..2005594	+	59	126209241	rpmD	APL_1777	-	50S ribosomal protein L30
1754	 40.00	0	2005599..2006033	+	144	126209242	rplO	APL_1778	-	50S ribosomal protein L15
1755	 38.32	0	2006037..2007359	+	440	126209243	secY	APL_1779	-	preprotein translocase subunit SecY
1756	 36.84	-1	2007385..2007498	+	37	126209244	rpmJ	APL_1780	-	50S ribosomal protein L36
1757	 41.46	0	2007635..2007991	+	118	126209245	rpsM	APL_1781	-	30S ribosomal protein S13
1758	 46.67	+1	2008008..2008397	+	129	126209246	rpsK	APL_1782	-	30S ribosomal protein S11
1759	 39.87	0	2008426..2009052	+	208	126209247	rpsD	APL_1783	-	30S ribosomal protein S4
1760	 42.02	0	2009118..2010107	+	329	126209248	rpoA	APL_1784	-	DNA-directed RNA polymerase subunit alpha
1761	 41.27	0	2010213..2010527	+	104	126209249	rplQ	APL_1785	-	50S ribosomal protein L17
1762	 45.78	+1	2010764..2011012	+	82	126209250	rpsP	APL_1786	-	30S ribosomal protein S16
1763	 40.72	0	2011046..2011573	+	175	126209251	rimM	APL_1787	-	16S rRNA-processing protein
1764	 45.63	+1	2011631..2012386	+	251	126209252	trmD	APL_1788	-	tRNA (guanine-N(1)-)-methyltransferase
1765	 42.45	0	2012412..2012762	+	116	126209253	rplS	APL_1789	-	50S ribosomal protein L19
1766	 43.38	0	2012932..2014125	-	397	126209254	-	APL_1790	-	hypothetical protein
1767	 42.74	0	2014341..2015456	+	371	126209255	-	APL_1791	-	putative periplasmic iron/siderophore binding protein
1768	 45.46	0	2015459..2016340	+	293	126209256	-	APL_1792	-	Fe(III) dicitrate ABC transporter, permease
1769	 41.67	0	2016356..2017123	+	255	126209257	-	APL_1793	-	Fe(III) dicitrate ABC transporter, ATP-binding protein
1770	 40.05	0	2017133..2017564	+	143	126209258	-	APL_1794	-	pseudoazurin
1771	 44.44	0	2017573..2018679	+	368	126209259	-	APL_1795	-	putative periplasmic iron/siderophore binding protein
1772	 46.01	+1	2018735..2019586	+	283	126209260	-	APL_1796	-	hypothetical protein
1773	 42.17	0	2019629..2020228	-	199	126209261	torD	APL_1797	-	chaperone protein TorD
1774	 46.82	+1	2020228..2022711	-	827	126209262	torA	APL_1798	-	trimethylamine-N-oxide reductase precursor
1775	 43.16	0	2022721..2023341	-	206	126209263	torC	APL_1799	-	pentahemic c-type cytochrome
1776	 46.47	+1	2023532..2024437	+	301	126209264	glyQ	APL_1800	-	glycyl-tRNA synthetase subunit alpha
1777	 40.89	0	2024484..2024867	+	127	126209265	-	APL_1801	-	hypothetical protein
1778	 27.41	-2	2025340..2025744	+	134	126209266	-	APL_1802	-	hypothetical protein
1779	 45.65	+1	2025782..2027851	+	689	126209267	glyS	APL_1803	-	glycyl-tRNA synthetase subunit beta
1780	 38.49	0	2027967..2028257	+	96	126209268	-	APL_1804	-	hypothetical protein
1781	 44.02	0	2028258..2029268	+	336	126209269	xerC	APL_1805	-	site-specific tyrosine recombinase XerC
1782	 38.46	0	2029272..2029661	-	129	126209270	-	APL_1806	-	hypothetical protein
1783	 46.45	+1	2029725..2030471	-	248	126209271	-	APL_1807	-	hypothetical protein
1784	 43.85	0	2030513..2031244	-	243	126209272	lpxH	APL_1808	-	UDP-2,3-diacylglucosamine hydrolase
1785	 41.33	0	2031277..2031801	-	174	126209273	-	APL_1809	-	hypothetical protein
1786	 41.95	0	2031836..2032624	-	262	126209274	-	APL_1810	-	putative Mg-dependent DNAse
1787	 36.33	-1	2033633..2034265	+	210	126209275	-	APL_1811	-	hypothetical protein
1788	 37.45	-1	2036534..2037310	-	258	126209276	macA	APL_1814	-	macrolide-specific efflux protein
1789	 31.40	-2	2037606..2038382	-	258	126209277	-	APL_1815	-	hypothetical protein
1790	 43.09	0	2038713..2039696	-	327	126209278	holB	APL_1816	-	DNA polymerase III subunit delta'
1791	 44.66	0	2039699..2040325	-	208	126209279	tdk	APL_1817	-	thymidylate kinase
1792	 41.84	0	2040329..2041363	-	344	126209280	-	APL_1818	-	hypothetical protein
1793	 37.18	-1	2041962..2042195	-	77	126209281	acpP	APL_1819	-	acyl carrier protein
1794	 46.81	+1	2042459..2043133	-	224	126209282	rpe	APL_1820	-	ribulose-phosphate 3-epimerase
1795	 42.59	0	2043355..2043624	+	89	126209283	rpmE2	APL_1821	-	50S ribosomal protein L31 type B
1796	 38.10	-1	2043638..2043763	+	41	126209284	rpmJ	APL_1822	-	50S ribosomal protein L36
1797	 44.78	0	2043868..2046270	-	800	126209285	pbpB	APL_1823	-	penicillin-binding protein 1B (PBP1b)
1798	 46.85	+1	2046349..2047206	-	285	126209286	menB	APL_1824	-	naphthoate synthase
1799	 46.46	+1	2047341..2049047	-	568	126209287	spoT	APL_1825	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp)ase)
1800	 44.57	0	2049150..2049425	-	91	126209288	rpoZ	APL_1826	-	DNA-directed RNA polymerase subunit omega
1801	 48.17	+1	2049552..2051633	-	693	126209289	recG	APL_1827	-	ATP-dependent DNA helicase recG
1802	 34.97	-1	2051757..2052122	-	121	126209290	-	APL_1828	-	PilT protein-like protein
1803	 36.11	-1	2052185..2052472	-	95	126209291	-	APL_1829	-	hypothetical protein
1804	 44.76	0	2052678..2054393	+	571	126209292	syp	APL_1830	-	prolyl-tRNA synthetase
1805	 37.11	-1	2054650..2055231	-	193	126209293	-	APL_1831	-	RNA polymerase sigma factor
1806	 43.89	0	2055320..2056276	+	318	126209294	-	APL_1832	-	putative sulfite oxidase subunit YedY
1807	 39.73	0	2056276..2056869	+	197	126209295	-	APL_1833	-	putative sulfite oxidase subunit YedZ
1808	 45.22	0	2056980..2057930	-	316	126209296	rpoH	APL_1834	-	RNA polymerase factor sigma-32
1809	 43.44	0	2058079..2059236	-	385	126209297	glpT	APL_1835	-	glycerol-3-phosphate transporter
1810	 24.76	-2	2059991..2060503	+	170	126209298	-	APL_1836	-	hypothetical protein
1811	 41.79	0	2061014..2062006	-	330	126209299	asnA	APL_1837	-	asparagine synthetase AsnA
1812	 38.74	0	2062188..2062649	+	153	126209300	asnC	APL_1838	-	DNA-binding transcriptional regulator AsnC
1813	 47.06	+1	2062838..2063602	+	254	126209301	udp	APL_1839	-	uridine phosphorylase
1814	 39.83	0	2063672..2064148	+	158	126209302	ubiC	APL_1840	-	4-hydroxybenzoate synthetase (chorismate lyase)
1815	 41.10	0	2064220..2065017	+	265	126209303	murI	APL_1841	-	glutamate racemase
1816	 41.31	0	2071381..2073147	-	588	126209304	cysI	APL_1842	-	sulfite reductase subunit beta
1817	 43.76	0	2073175..2074986	-	603	126209305	cysJ	APL_1843	-	sulfite reductase [NADPH] flavoprotein alpha-component (SIR-FP)
1818	 45.36	0	2075287..2076018	-	243	126209306	cysN	APL_1844	-	sulphate adenylate transferase subunit 1
1819	 45.28	0	2076271..2077065	+	264	126209307	sbp	APL_1845	-	sulfate-binding protein precursor
1820	 42.19	0	2077084..2077896	+	270	126209308	cysT	APL_1846	-	Sulfate transport system permease protein cysT
1821	 43.79	0	2077909..2078721	+	270	126209309	cysW	APL_1847	-	Sulfate transport system permease protein cysW
1822	 40.52	0	2078734..2079804	+	356	126209310	cysA	APL_1848	-	Sulfate/thiosulfate import ATP-binding protein cysA
1823	 49.65	+2	2079893..2081038	-	381	126209311	lldD	APL_1849	-	L-lactate dehydrogenase
1824	 42.48	0	2081220..2081984	-	254	126209312	birA	APL_1850	-	bifunctional biotin operon repressor/biotin synthetase BirA
1825	 43.38	0	2081993..2083027	-	344	126209313	murB	APL_1851	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1826	 42.74	0	2083177..2084271	-	364	126209314	ompA	APL_1852	-	Outer membrane protein P5 precursor (OMP P5)
1827	 42.51	0	2084660..2086141	-	493	126209315	ilvC	APL_1853	-	ketol-acid reductoisomerase
1828	 43.80	0	2086378..2087619	+	413	126209316	pqiA	APL_1854	-	hypothetical protein
1829	 42.96	0	2087796..2088896	+	366	126209317	-	APL_1855	-	hypothetical protein
1830	 40.68	0	2088868..2089221	+	117	126209318	-	APL_1856	-	hypothetical protein
1831	 36.19	-1	2089218..2089532	+	104	126209319	merP	APL_1857	-	MerP
1832	 43.90	0	2089760..2090005	-	81	126209320	-	APL_1858	-	hypothetical protein
1833	 44.11	0	2090045..2090944	-	299	126209321	-	APL_1859	-	NADH-dependent butanol dehydrogenase 1
1834	 44.41	0	2091060..2091962	+	300	126209322	lysR	APL_1860	-	LysR protein
1835	 44.48	0	2092166..2092990	+	274	126209323	dapD	APL_1861	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1836	 39.57	0	2093055..2093519	+	154	126209324	aroQ	APL_1862	-	3-dehydroquinate dehydratase
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.