IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1628	 39.04	0	1879085..1879873	-	262	126209116	atpB	APL_1652	-	F0F1 ATP synthase subunit A
1629	 30.99	-2	1879898..1880281	-	127	126209117	-	APL_1653	-	F0F1 ATP synthase subunit I
1630	 40.13	0	1880642..1881259	-	205	126209118	gidB	APL_1654	-	glucose-inhibited division protein B
1631	 44.90	0	1881359..1883251	-	630	126209119	gidA	APL_1655	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1632	 38.25	0	1883701..1884513	+	270	126209120	-	APL_1656	-	hypothetical protein
1633	 41.89	0	1884563..1885345	-	260	126209121	-	APL_1657	-	putative amino-acid ABC transporter-binding protein
1634	 44.03	0	1885558..1886034	-	158	126209122	-	APL_1658	-	hypothetical protein
1635	 38.89	0	1886037..1886414	-	125	126209123	-	APL_1659	-	hypothetical protein
1636	 45.53	+1	1886502..1887329	-	275	126209124	-	APL_1660	-	mannose permease IID component
1637	 45.53	+1	1887340..1888134	-	264	126209125	-	APL_1661	-	mannose permease IIC component
1638	 44.27	0	1888149..1889117	-	322	126209126	-	APL_1662	-	PTS system mannose-specific EIIAB component
1639	 38.87	0	1889293..1890105	-	270	126209127	-	APL_1663	-	transposase-like protein
1640	 40.39	0	1890117..1890626	-	169	126209128	-	APL_1664	-	transposase
1641	 44.30	0	1890708..1892057	-	449	126209129	gntP_1	APL_1665	-	gluconate permease
1642	 39.15	0	1892235..1892750	+	171	126209130	gntK	APL_1666	-	thermosensitive gluconokinase
1643	 43.14	0	1892822..1893820	-	332	126209131	gntR	APL_1667	-	HTH-type transcriptional regulator
1644	 44.95	0	1893943..1894932	+	329	126209132	rbsR	APL_1668	-	ribose operon repressor
1645	 41.19	0	1895053..1895472	+	139	126209133	rbsD	APL_1669	-	D-ribose pyranase
1646	 45.21	0	1895485..1896966	+	493	126209134	rbsA	APL_1670	-	D-ribose transporter ATP binding protein
1647	 43.23	0	1897019..1897978	+	319	126209135	rbsC	APL_1671	-	ribose ABC transporter permease protein
1648	 46.85	+1	1898002..1898874	+	290	126209136	rbsB	APL_1672	-	D-ribose transporter subunit RbsB
1649	 46.49	+1	1898947..1899858	+	303	126209137	rbsK	APL_1673	-	ribokinase
1650	 39.08	0	1900092..1902509	+	805	126209138	dmsA	APL_1674	-	anaerobic dimethyl sulfoxide reductase chain A precursor
1651	 42.23	0	1902519..1903136	+	205	126209139	dmsB	APL_1675	-	anaerobic dimethyl sulfoxide reductase chain B
1652	 42.57	0	1903138..1903971	+	277	126209140	dmsC	APL_1676	-	anaerobic dimethyl sulfoxide reductase chain C
1653	 37.79	-1	1904027..1904632	+	201	126209141	-	APL_1677	-	twin-argninine leader-binding protein DmsD
1654	 43.53	0	1904636..1905145	+	169	126209142	-	APL_1678	-	putative ferredoxin
1655	 36.67	-1	1905189..1905518	-	109	126209143	-	APL_1679	-	putative transcriptional regulator
1656	 37.76	-1	1905515..1906846	-	443	126209144	-	APL_1680	-	hypothetical protein
1657	 27.96	-2	1907178..1908869	-	563	126209145	-	APL_1681	-	hypothetical protein
1658	 45.80	+1	1908937..1912833	-	1298	126209146	purL	APL_1682	-	phosphoribosylformylglycinamidine synthase
1659	 41.77	0	1913060..1913806	+	248	126209147	fucR	APL_1683	-	L-fucose operon activator
1660	 46.07	+1	1914009..1915775	+	588	126209148	fucI	APL_1684	-	L-fucose isomerase
1661	 44.70	0	1915853..1917286	+	477	126209149	fucK	APL_1685	-	L-fuculokinase
1662	 47.36	+1	1917421..1917855	+	144	126209150	fucU	APL_1686	-	fucose operon FucU protein
1663	 44.70	0	1917906..1918556	+	216	126209151	fucA	APL_1687	-	L-fuculose phosphate aldolase
1664	 44.34	0	1918611..1919900	+	429	126209152	fucP	APL_1688	-	L-fucose permease
1665	 44.36	0	1920020..1921171	+	383	126209153	-	APL_1689	-	L-1,2-propanediol oxidoreductase
1666	 44.86	0	1921375..1922016	+	213	126209154	-	APL_1690	-	inner membrane protein
1667	 41.36	0	1922228..1922887	+	219	126209155	-	APL_1691	-	putative ABC transporter, permease protein, amino acid
1668	 40.66	0	1922877..1923545	+	222	126209156	-	APL_1692	-	putative ABC transporter, permease protein, amino acid
1669	 44.26	0	1923546..1924277	+	243	126209157	-	APL_1693	-	putative amino-acid ABC transporter ATP-binding protein
1670	 43.97	0	1924338..1925174	+	278	126209158	-	APL_1694	-	antigenic protein, ABC transporter-like protein
1671	 40.14	0	1925307..1927376	+	689	126209159	kpsC	APL_1695	-	capsule polysaccharide modification protein LipA
1672	 37.66	-1	1927399..1928715	+	438	126209160	hcsB	APL_1696	-	capsule polysaccharide modification protein HcsB
1673	 41.10	0	1928704..1929798	-	364	126209161	-	APL_1697	-	hypothetical protein
1674	 45.81	+1	1929811..1930491	-	226	126209162	ulaD	APL_1698	-	3-keto-L-gulonate-6-phosphate decarboxylase
1675	 43.16	0	1930564..1931031	-	155	126209163	ulaC	APL_1699	-	ascorbate-specific phosphotransferase protein IIA component
1676	 43.69	0	1931109..1932914	-	601	162329624	ulaA	APL_1700	-	ascorbate-specific PTS system enzyme IIC/IIB
1677	 42.86	0	1933388..1934479	+	363	126209165	ulaG	APL_1701	-	putative L-ascorbate 6-phosphate lactonase
1678	 38.96	0	1934581..1935327	+	248	126209166	ulaR	APL_1702	-	transcriptional repressor UlaR
1679	 41.46	0	1935413..1936273	+	286	126209167	-	APL_1703	-	putative L-xylulose 5-phosphate 3-epimerase
1680	 46.26	+1	1936300..1936980	+	226	126209168	araD	APL_1704	-	L-ribulose-5-phosphate 4-epimerase
1681	 47.62	+1	1937132..1937761	-	209	126209169	-	APL_1705	-	FKBP-type peptidyl-prolyl cis-trans isomerase
1682	 38.74	0	1938143..1938826	+	227	126209170	-	APL_1706	-	hypothetical protein
1683	 39.54	0	1939172..1939606	+	144	126209171	-	APL_1707	-	hypothetical protein
1684	 38.73	0	1939752..1940381	+	209	126209172	-	APL_1708	-	hypothetical protein
1685	 40.49	0	1940493..1941149	+	218	126209173	-	APL_1709	-	hypothetical protein
1686	 41.64	0	1941209..1942135	-	308	126209174	rfaD	APL_1710	-	ADP-L-glycero-D-mannoheptose-6-epimerase
1687	 43.44	0	1942275..1942739	-	154	126209175	def	APL_1711	-	peptide deformylase
1688	 46.32	+1	1942973..1944127	+	384	126209176	smf	APL_1712	-	protein smf (DNA-processing chain A)
1689	 47.09	+1	1944171..1946177	-	668	126209177	-	APL_1713	-	hypothetical protein
1690	 46.46	+1	1946399..1947754	-	451	126209178	ulaA	APL_1714	-	ascorbate-specific PTS system enzyme IIC
1691	 43.96	0	1947763..1948035	-	90	126209179	sgaB	APL_1715	-	phosphotransferase system, galactitol-specific IIB component
1692	 43.24	0	1948338..1948751	+	137	126209180	secE	APL_1716	-	preprotein translocase subunit SecE
1693	 45.57	+1	1948786..1949316	+	176	126209181	nusG	APL_1717	-	transcription antitermination protein NusG
1694	 41.96	0	1949605..1950033	+	142	126209182	rplK	APL_1718	-	50S ribosomal protein L11
1695	 42.90	0	1950038..1950727	+	229	126209183	rplA	APL_1719	-	50S ribosomal protein L1
1696	 44.72	0	1951016..1951507	+	163	126209184	rplJ	APL_1720	-	50S ribosomal protein L10
1697	 42.01	0	1951568..1951936	+	122	126209185	rplL	APL_1721	-	50S ribosomal protein L7/L12
1698	 36.26	-1	1952100..1952372	+	90	126209186	-	APL_1722	-	hypothetical protein
1699	 38.66	0	1952377..1953633	+	418	126209187	-	APL_1723	-	hypothetical protein
1700	 30.93	-2	1954021..1954560	+	179	126209188	-	APL_1724	-	hypothetical protein
1701	 30.80	-2	1955367..1956155	+	262	126209189	-	APL_1725	-	hypothetical protein
1702	 33.70	-2	1956260..1956808	+	182	126209190	-	APL_1726	-	hypothetical protein
1703	 43.44	0	1957228..1961256	+	1342	126209191	rpoB	APL_1727	-	DNA-directed RNA polymerase subunit beta
1704	 44.11	0	1961382..1965620	+	1412	126209192	rpoC	APL_1728	-	DNA-directed RNA polymerase subunit beta'
1705	 26.02	-2	1965725..1967146	+	473	126209193	-	APL_1729	-	hypothetical protein
1706	 42.42	0	1967877..1968107	+	76	126209194	-	APL_1730	-	hypothetical protein
1707	 38.24	0	1968119..1968505	+	128	126209195	-	APL_1731	-	hypothetical protein
1708	 38.13	-1	1968640..1969056	-	138	126209196	-	APL_1732	-	hypothetical protein
1709	 37.79	-1	1969302..1969952	+	216	126209197	-	APL_1733	-	hypothetical protein
1710	 22.69	-2	1970132..1970911	-	259	126209198	-	APL_1734	-	hypothetical protein
1711	 43.16	0	1970984..1972306	-	440	126209199	hslU	APL_1735	-	ATP-dependent protease ATP-binding subunit
1712	 41.95	0	1972361..1972882	-	173	126209200	hslV	APL_1736	-	ATP-dependent protease peptidase subunit
1713	 44.96	0	1972961..1973674	-	237	126209201	sfsA	APL_1737	-	sugar fermentation stimulation-like protein
1714	 42.24	0	1973932..1974324	-	130	126209202	-	APL_1738	-	lactoylglutathione lyase and related lyases
1715	 43.98	0	1974422..1975567	+	381	126209203	mutY	APL_1739	-	A/G-specific adenine glycosylase
1716	 36.23	-1	1975571..1975846	+	91	126209204	-	APL_1740	-	hypothetical protein
1717	 42.44	0	1975864..1976961	+	365	126209205	mltC	APL_1741	-	murein transglycosylase C
1718	 44.90	0	1977954..1979345	+	463	126209206	srp54	APL_1742	-	signal recognition particle protein (sigma-54 like protein)
1719	 40.78	0	1979499..1981163	-	554	126209207	-	APL_1743	-	Ser/Thr protein phosphatase family protein
1720	 45.76	+1	1981355..1982521	-	388	126209208	ubiF	APL_1744	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
1721	 34.95	-1	1982555..1982863	-	102	126209209	-	APL_1745	-	hypothetical protein
1722	 38.41	0	1982836..1983150	-	104	126209210	-	APL_1746	-	hypothetical protein
1723	 46.82	+1	1983337..1984863	+	508	126209211	comM	APL_1747	-	competence protein comM
1724	 35.60	-1	1984988..1986091	+	367	126209212	-	APL_1748	-	Outer membrane lipoprotein A precursor
1725	 44.71	0	1986137..1986901	-	254	126209213	-	APL_1749	-	acyl-CoA thioester hydrolase YfbB
1726	 46.22	+1	1986901..1988607	-	568	126209214	menD	APL_1750	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1727	 38.05	-1	1988860..1989453	+	197	126209215	-	APL_1751	-	hypothetical protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.