IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1545	 33.33	-2	1797580..1797990	-	136	126209033	exbD	APL_1569	-	biopolymer transport ExbD protein
1546	 31.84	-2	1797990..1798658	-	222	126209034	exbB	APL_1570	-	biopolymer transport ExbB protein
1547	 37.79	-1	1798680..1799420	-	246	126209035	tonB1	APL_1571	-	periplasmic protein
1548	 39.76	0	1799696..1799944	-	82	126209036	-	APL_1572	-	hypothetical protein
1549	 49.29	+2	1800111..1800818	-	235	126209037	-	APL_1573	-	2,3-diketo-L-gulonate reductase
1550	 40.33	0	1801340..1801882	+	180	126209038	-	APL_1574	-	hypothetical protein
1551	 41.98	0	1801954..1802508	-	184	126209039	-	APL_1575	-	hypothetical protein
1552	 34.83	-1	1802526..1803461	-	311	126209040	kpsF	APL_1576	-	arabinose-5-phosphate isomerase
1553	 36.50	-1	1803473..1804231	-	252	126209041	kdsB	APL_1577	-	3-deoxy-manno-octulosonate cytidylyltransferase
1554	 41.70	0	1804277..1805137	-	286	126209042	kdsA	APL_1578	-	2-dehydro-3-deoxyphosphooctonate aldolase
1555	 28.11	-2	1805186..1806334	-	382	126209043	cps5C	APL_1579	-	region 2 capsular polysaccharide biosynthesis protein
1556	 27.01	-2	1806349..1807929	-	526	126209044	cps5B	APL_1580	-	region 2 capsular polysaccharide biosynthesis protein
1557	 29.61	-2	1807932..1808897	-	321	126209045	-	APL_1581	-	putative glycosyltransferase
1558	 44.05	0	1809226..1810410	+	394	126209046	cpxD	APL_1582	-	capsule polysaccharide export protein
1559	 38.26	0	1810436..1811593	+	385	126209047	cpxC	APL_1583	-	capsule polysaccharide export inner-membrane protein
1560	 39.22	0	1811593..1812390	+	265	126209048	cpxB	APL_1584	-	capsule polysaccharide export inner-membrane protein
1561	 38.56	0	1812387..1813037	+	216	126209049	cpxA	APL_1585	-	ATP-binding protein
1562	 43.58	0	1813385..1814857	-	490	126209050	modF	APL_1586	-	putative molybdenum transport ATP-binding protein ModF
1563	 44.58	0	1814950..1815900	-	316	126209051	fmt	APL_1587	-	methionyl-tRNA formyltransferase
1564	 43.85	0	1816063..1817013	-	316	126209052	-	APL_1588	-	TRAP transporter solute receptor
1565	 43.07	0	1817075..1817803	+	242	126209053	-	APL_1589	-	hypothetical protein
1566	 43.41	0	1817884..1819362	+	492	126209054	trkH	APL_1590	-	Trk system potassium uptake protein TrkH
1567	 41.86	0	1819377..1819904	+	175	126209055	-	APL_1591	-	hypothetical protein
1568	 41.03	0	1820008..1820397	+	129	126209056	mscL	APL_1592	-	large-conductance mechanosensitive channel
1569	 46.42	+1	1820527..1821519	-	330	126209057	lipA	APL_1593	-	lipoyl synthase
1570	 41.86	0	1821631..1822287	-	218	126209058	lipB	APL_1594	-	lipoyltransferase
1571	 40.67	0	1822319..1822618	-	99	126209059	-	APL_1595	-	hypothetical protein
1572	 42.66	0	1822752..1823930	-	392	126209060	dacA	APL_1596	-	D-alanyl-D-alanine carboxypeptidase fraction A
1573	 42.02	0	1824026..1824589	-	187	126209061	-	APL_1597	-	rare lipoprotein A RlpA-like protein
1574	 44.00	0	1824764..1825888	-	374	126209062	mrdB	APL_1598	-	rod shape-determining protein
1575	 45.77	+1	1825881..1827842	-	653	126209063	mrdA	APL_1599	-	penicillin-binding protein 2
1576	 48.93	+1	1827924..1828391	-	155	126209064	-	APL_1600	-	SPOUT methyltransferase superfamily protein
1577	 43.17	0	1828414..1828728	-	104	126209065	-	APL_1601	-	hypothetical protein
1578	 46.13	+1	1828954..1831548	-	864	126209066	mutS	APL_1602	-	DNA mismatch repair protein
1579	 45.87	+1	1831714..1832463	-	249	126209067	-	APL_1603	-	putative amino-acid ABC transporter ATP-binding protein
1580	 46.64	+1	1832485..1833168	-	227	126209068	-	APL_1604	-	amino acid ABC transporter permease
1581	 45.65	+1	1833350..1834648	-	432	126209069	-	APL_1605	-	hypothetical protein
1582	 43.23	0	1834920..1835414	+	164	126209070	-	APL_1606	-	regulator of cell morphogenesis and NO signaling
1583	 46.67	+1	1835493..1835822	-	109	126209071	-	APL_1607	-	putative drug resistance protein
1584	 41.24	0	1835910..1836200	-	96	126209072	-	APL_1608	-	hypothetical protein
1585	 48.48	+1	1836354..1836914	-	186	126209073	-	APL_1609	-	hypothetical protein
1586	 42.52	0	1837087..1837380	-	97	126209074	-	APL_1610	-	hypothetical protein
1587	 43.91	0	1837396..1838208	-	270	126209075	ureD	APL_1611	-	urease accessory protein UreD
1588	 45.13	0	1838377..1839012	-	211	126209076	ureG	APL_1612	-	urease accessory protein UreG
1589	 45.32	0	1839033..1839716	-	227	126209077	ureF	APL_1613	-	urease accessory protein UreF
1590	 45.42	0	1839728..1840306	-	192	126209078	ureE	APL_1614	-	urease accessory protein UreE
1591	 43.37	0	1840422..1841039	-	205	126209079	gst	APL_1615	-	putative glutathione S-transferase
1592	 48.81	+1	1841163..1842881	-	572	126209080	ureC	APL_1616	-	urease subunit alpha
1593	 46.41	+1	1842892..1843197	-	101	126209081	ureB	APL_1617	-	urease subunit beta
1594	 46.53	+1	1843387..1843689	-	100	126209082	ureA	APL_1618	-	urease subunit gamma
1595	 42.89	0	1843761..1844576	-	271	126209083	utp	APL_1619	-	urea transport protein ApUT
1596	 40.48	0	1844688..1845317	-	209	126209084	cbiO	APL_1620	-	ABC transporter ATP-binding protein
1597	 40.61	0	1845340..1845957	-	205	126209085	cbiQ	APL_1621	-	putative ABC transport permease protein CbiQ
1598	 46.14	+1	1845964..1846572	-	202	126209086	cbiM	APL_1622	-	cobalt transport protein CbiM
1599	 42.86	0	1846573..1847055	-	160	126209087	cbiL	APL_1623	-	putative cytoplasmic membrane protein CbiL
1600	 39.74	0	1847055..1847741	-	228	126209088	cbiK	APL_1624	-	putative periplasmic binding protein CbiK
1601	 45.11	0	1848084..1848839	+	251	126209089	apuR	APL_1625	-	putative LysR-type transcriptional regulator
1602	 35.71	-1	1848918..1849379	-	153	126209090	-	APL_1626	-	hypothetical protein
1603	 44.37	0	1849607..1851472	-	621	126209091	-	APL_1627	-	hypothetical protein
1604	 39.43	0	1851533..1852057	-	174	126209092	mtlR	APL_1628	-	mannitol repressor protein
1605	 41.49	0	1852057..1853196	-	379	126209093	mtlD	APL_1629	-	mannitol-1-phosphate 5-dehydrogenase
1606	 43.28	0	1853283..1855172	-	629	126209094	mtlA	APL_1630	-	PTS system mannitol-specific EIICBA component
1607	 42.99	0	1855480..1857312	-	610	126209095	glmS	APL_1631	-	D-fructose-6-phosphate amidotransferase
1608	 41.90	0	1857436..1858194	-	252	126209096	-	APL_1632	-	sugar metabolism transcriptional regulator
1609	 45.27	0	1858332..1858532	-	66	126209097	-	APL_1633	-	hypothetical protein
1610	 36.35	-1	1858631..1859623	-	330	126209098	-	APL_1634	-	putative glycosyltransferase
1611	 39.77	0	1859672..1861534	-	620	126209099	-	APL_1635	-	putative adhesin processing HmwC-like protein
1612	 44.14	0	1861550..1862881	-	443	126209100	-	APL_1636	-	hypothetical protein
1613	 43.35	0	1863055..1863753	-	232	126209101	mtn	APL_1637	-	MTA/SAH nucleosidase
1614	 37.01	-1	1863753..1864460	-	235	126209102	dsbA_2	APL_1638	-	thiol disulfide oxidoreductase
1615	 37.84	-1	1864527..1864748	-	73	126209103	slyX	APL_1639	-	hypothetical protein
1616	 40.30	0	1864839..1865570	+	243	126209104	fkpA	APL_1640	-	putative FKBP-type peptidyl-prolyl cis-trans isomerase
1617	 39.39	0	1865682..1866341	+	219	126209105	-	APL_1641	-	hypothetical protein
1618	 41.27	0	1866341..1866718	+	125	126209106	tusD	APL_1642	-	hypothetical protein
1619	 36.02	-1	1866721..1867092	+	123	126209107	-	APL_1643	-	hypothetical protein
1620	 34.81	-1	1867105..1867374	+	89	126209108	-	APL_1644	-	hypothetical protein
1621	 39.05	0	1873346..1873765	-	139	126209109	atpC	APL_1645	-	F0F1 ATP synthase subunit epsilon
1622	 43.01	0	1873805..1875178	-	457	126209110	atpD	APL_1646	-	F0F1 ATP synthase subunit beta
1623	 39.68	0	1875192..1876058	-	288	126209111	atpG	APL_1647	-	F0F1 ATP synthase subunit gamma
1624	 43.32	0	1876081..1877622	-	513	126209112	atpA	APL_1648	-	F0F1 ATP synthase subunit alpha
1625	 39.33	0	1877635..1878168	-	177	126209113	atpH	APL_1649	-	F0F1 ATP synthase subunit delta
1626	 40.98	0	1878182..1878652	-	156	126209114	atpF	APL_1650	-	F0F1 ATP synthase subunit B
1627	 38.43	0	1878712..1878966	-	84	126209115	atpE	APL_1651	-	F0F1 ATP synthase subunit C
1628	 39.04	0	1879085..1879873	-	262	126209116	atpB	APL_1652	-	F0F1 ATP synthase subunit A
1629	 30.99	-2	1879898..1880281	-	127	126209117	-	APL_1653	-	F0F1 ATP synthase subunit I
1630	 40.13	0	1880642..1881259	-	205	126209118	gidB	APL_1654	-	glucose-inhibited division protein B
1631	 44.90	0	1881359..1883251	-	630	126209119	gidA	APL_1655	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1632	 38.25	0	1883701..1884513	+	270	126209120	-	APL_1656	-	hypothetical protein
1633	 41.89	0	1884563..1885345	-	260	126209121	-	APL_1657	-	putative amino-acid ABC transporter-binding protein
1634	 44.03	0	1885558..1886034	-	158	126209122	-	APL_1658	-	hypothetical protein
1635	 38.89	0	1886037..1886414	-	125	126209123	-	APL_1659	-	hypothetical protein
1636	 45.53	+1	1886502..1887329	-	275	126209124	-	APL_1660	-	mannose permease IID component
1637	 45.53	+1	1887340..1888134	-	264	126209125	-	APL_1661	-	mannose permease IIC component
1638	 44.27	0	1888149..1889117	-	322	126209126	-	APL_1662	-	PTS system mannose-specific EIIAB component
1639	 38.87	0	1889293..1890105	-	270	126209127	-	APL_1663	-	transposase-like protein
1640	 40.39	0	1890117..1890626	-	169	126209128	-	APL_1664	-	transposase
1641	 44.30	0	1890708..1892057	-	449	126209129	gntP_1	APL_1665	-	gluconate permease
1642	 39.15	0	1892235..1892750	+	171	126209130	gntK	APL_1666	-	thermosensitive gluconokinase
1643	 43.14	0	1892822..1893820	-	332	126209131	gntR	APL_1667	-	HTH-type transcriptional regulator
1644	 44.95	0	1893943..1894932	+	329	126209132	rbsR	APL_1668	-	ribose operon repressor
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.