IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1424	 42.98	0	1660069..1661115	+	348	126208912	fbpC	APL_1448	-	ferric transporter ATP-binding subunit
1425	 44.76	0	1661206..1662570	-	454	126208913	mpl	APL_1449	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
1426	 42.99	0	1662693..1663697	+	334	126208914	fbp	APL_1450	-	fructose-1,6-bisphosphatase
1427	 30.39	-2	1663853..1664464	-	203	126208915	-	APL_1451	-	hypothetical protein
1428	 43.74	0	1664928..1666157	-	409	126208916	serA	APL_1452	-	D-3-phosphoglycerate dehydrogenase
1429	 47.27	+1	1666301..1666960	-	219	126208917	rpiA	APL_1453	-	ribose-5-phosphate isomerase A
1430	 45.92	+1	1667107..1668441	-	444	126208918	mrsA	APL_1454	-	phosphoglucosamine mutase
1431	 43.55	0	1668513..1670039	-	508	126208919	ilvA	APL_1455	-	threonine dehydratase
1432	 46.73	+1	1670166..1670762	-	198	126208920	slyD	APL_1456	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
1433	 47.02	+1	1671115..1671801	-	228	126208921	aqpZ	APL_1457	-	aquaporin Z
1434	 38.77	0	1671947..1672663	-	238	126208922	-	APL_1458	-	hypothetical protein
1435	 45.50	+1	1672705..1673460	-	251	126208923	-	APL_1459	-	hypothetical protein
1436	 35.69	-1	1673509..1674525	+	338	126208924	-	APL_1460	-	hypothetical protein
1437	 40.04	0	1674525..1675433	+	302	126208925	menA	APL_1461	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1438	 43.57	0	1675512..1675853	-	113	126208926	-	APL_1462	-	iron-sulfur cluster insertion protein ErpA
1439	 30.56	-2	1676054..1676845	+	263	126208927	-	APL_1463	-	putative ABC-transporter
1440	 35.38	-1	1676845..1677576	+	243	126208928	wzm	APL_1464	-	ABC transporter integral membrane subunit
1441	 27.44	-2	1677587..1678366	+	259	126208929	-	APL_1465	-	hypothetical protein
1442	 23.95	-2	1679260..1679664	+	134	126208930	-	APL_1466	-	hypothetical protein
1443	 38.99	0	1679666..1680814	+	382	126208931	rfbD	APL_1467	-	putative UDP-galactopyranose mutase
1444	 28.60	-2	1680877..1681446	+	189	126208932	-	APL_1468	-	hypothetical protein
1445	 33.77	-2	1681443..1682366	+	307	126208933	-	APL_1469	-	glycosyl transferase family protein
1446	 29.20	-2	1682372..1683145	+	257	126208934	-	APL_1470	-	hypothetical protein
1447	 33.83	-2	1683164..1684582	+	472	126208935	-	APL_1471	-	putative sugar transferase
1448	 42.74	0	1684665..1685738	+	357	126208936	rfbB1	APL_1472	-	dTDP-glucose 4,6-dehydratase
1449	 38.43	0	1685959..1686174	+	71	126208937	rpsU	APL_1473	-	30S ribosomal protein S21
1450	 44.58	0	1686354..1688096	+	580	126208938	dnaG	APL_1474	-	DNA primase
1451	 43.60	0	1688201..1690060	+	619	126208939	rpoD	APL_1475	-	RNA polymerase sigma factor RpoD
1452	 43.07	0	1690213..1691403	-	396	126208940	tyrS	APL_1476	-	tyrosyl-tRNA synthetase
1453	 37.42	-1	1691748..1692212	-	154	126208941	-	APL_1477	-	hypothetical protein
1454	 45.04	0	1692326..1694683	-	785	126208942	vacB	APL_1478	-	ribonuclease R
1455	 43.02	0	1694751..1695266	-	171	126208943	-	APL_1479	-	thioredoxin-like protein
1456	 46.45	+1	1695266..1695898	-	210	126208944	-	APL_1480	-	DNA-binding transcriptional repressor FabR
1457	 43.18	0	1695891..1696784	-	297	126208945	oxyR	APL_1481	-	DNA-binding transcriptional regulator OxyR
1458	 43.95	0	1696909..1697643	+	244	126208946	-	APL_1482	-	hybrid peroxiredoxin HyPrx5
1459	 30.39	-2	1698048..1698659	+	203	126208947	-	APL_1483	-	hypothetical protein
1460	 36.33	-1	1698893..1699525	-	210	126208948	-	APL_1484	-	hypothetical protein
1461	 41.23	0	1699929..1700789	-	286	126208949	pdxY	APL_1485	-	pyridoxamine kinase
1462	 47.06	+1	1701093..1702046	-	317	126208950	accA	APL_1486	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1463	 45.96	+1	1702163..1703572	-	469	126208951	sufI	APL_1487	-	protein SufI precursor
1464	 45.31	0	1703581..1704315	-	244	126208952	plsC	APL_1488	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1465	 42.71	0	1704458..1704958	+	166	126208953	tpx	APL_1489	-	putative thiol peroxidase
1466	 47.68	+1	1705081..1706439	+	452	126208954	trmE	APL_1490	-	tRNA modification GTPase TrmE
1467	 45.94	+1	1706547..1707902	-	451	126208955	-	APL_1491	-	hypothetical protein
1468	 35.90	-1	1707915..1708187	-	90	126208956	-	APL_1492	-	hypothetical protein
1469	 40.87	0	1708325..1709014	-	229	126208957	-	APL_1493	-	hypothetical protein
1470	 41.40	0	1709330..1709899	+	189	126208958	ftpA	APL_1494	-	fine tangled pili major subunit
1471	 37.95	-1	1710145..1710447	+	100	126208959	-	APL_1495	-	putative transcriptional regulator
1472	 43.52	0	1710594..1711958	+	454	126208960	-	APL_1496	-	hypothetical protein
1473	 43.86	0	1712026..1714200	-	724	126208961	-	APL_1497	-	putative integral membrane protein
1474	 46.84	+1	1714282..1714740	-	152	126208962	mgsA	APL_1498	-	methylglyoxal synthase
1475	 44.11	0	1714873..1716153	+	426	126208963	thrC	APL_1499	-	threonine synthase
1476	 40.00	0	1716239..1716748	+	169	126208964	-	APL_1500	-	hypothetical protein
1477	 38.57	0	1716790..1717572	+	260	126208965	-	APL_1501	-	transposase
1478	 45.41	0	1717631..1720495	-	954	126208966	valS	APL_1502	-	valyl-tRNA synthetase
1479	 38.42	0	1721238..1721414	-	58	126208967	-	APL_1503	-	hypothetical protein
1480	 36.64	-1	1721574..1721996	-	140	126208968	-	APL_1504	-	putative acetyltransferase
1481	 46.12	+1	1721997..1722434	-	145	126208969	holC	APL_1505	-	DNA polymerase III subunit chi
1482	 42.79	0	1722708..1723151	+	147	126208970	-	APL_1506	-	hypothetical protein
1483	 42.01	0	1723353..1724654	+	433	126208971	tig	APL_1507	-	trigger factor
1484	 37.11	-1	1724787..1725236	+	149	126208972	-	APL_1508	-	putative rhodanese-related sulfurtransferase
1485	 40.72	0	1725261..1725761	+	166	126208973	secB	APL_1509	-	preprotein translocase subunit SecB
1486	 45.70	+1	1725946..1726956	+	336	126208974	gpsA	APL_1510	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1487	 41.67	0	1726968..1727783	+	271	126208975	cysE	APL_1511	-	serine acetyltransferase
1488	 45.06	0	1727979..1729163	-	394	126208976	tufB	APL_1512	-	elongation factor Tu
1489	 40.17	0	1729917..1730867	+	316	126208977	coaA	APL_1513	-	pantothenate kinase
1490	 42.36	0	1731002..1731544	+	180	126208978	dsbE	APL_1514	-	thiol:disulfide interchange protein DsbE
1491	 41.67	0	1731549..1732016	+	155	126208979	-	APL_1515	-	hypothetical protein
1492	 41.86	0	1732016..1732930	+	304	126208980	-	APL_1516	-	cytochrome c biogenesis factor-like protein
1493	 47.52	+1	1733002..1733586	+	194	126208981	mogA	APL_1517	-	molybdenum cofactor biosynthesis protein
1494	 45.43	0	1733706..1734044	+	112	126208982	glnB	APL_1518	-	nitrogen regulatory protein P-II
1495	 39.96	0	1734123..1734605	+	160	126208983	lspA	APL_1519	-	lipoprotein signal peptidase
1496	 46.35	+1	1734606..1735550	+	314	126208984	ispH	APL_1520	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1497	 41.77	0	1735550..1735798	+	82	126208985	-	APL_1521	-	hypothetical protein
1498	 47.00	+1	1735867..1736466	-	199	126208986	-	APL_1522	-	hypothetical protein
1499	 43.78	0	1736466..1738283	-	605	126208987	chuW	APL_1523	-	coproporphyrinogen III oxidase
1500	 44.17	0	1738440..1739057	-	205	126208988	gst	APL_1524	-	glutathione S-transferase
1501	 44.52	0	1739123..1740373	-	416	126208989	lysA	APL_1525	-	diaminopimelate decarboxylase
1502	 44.06	0	1740789..1741133	-	114	126208990	frdD	APL_1526	-	fumarate reductase subunit D
1503	 37.91	-1	1741146..1741538	-	130	126208991	frdC	APL_1527	-	fumarate reductase subunit C
1504	 44.76	0	1741547..1742281	-	244	126208992	frdB	APL_1528	-	fumarate reductase iron-sulfur subunit
1505	 45.44	0	1742294..1744093	-	599	126208993	frdA	APL_1529	-	fumarate reductase flavoprotein subunit
1506	 46.24	+1	1744436..1745419	+	327	126208994	poxA	APL_1530	-	lysyl-tRNA synthetase
1507	 45.58	+1	1745501..1746325	-	274	126208995	dapF	APL_1531	-	diaminopimelate epimerase
1508	 43.99	0	1746506..1747828	+	440	126208996	dcuB	APL_1532	-	anaerobic C4-dicarboxylate transporter
1509	 42.47	0	1747900..1748271	-	123	126208997	crcB	APL_1533	-	camphor resistance-like protein CrcB
1510	 38.97	0	1748274..1749338	-	354	126208998	-	APL_1534	-	putative transport system permease protein
1511	 46.22	+1	1749433..1750542	+	369	126208999	anmK	APL_1535	-	anhydro-N-acetylmuramic acid kinase
1512	 46.23	+1	1750596..1751510	+	304	126209000	murQ	APL_1536	-	N-acetylmuramic acid-6-phosphate etherase
1513	 46.15	+1	1751577..1752458	-	293	126209001	prmA	APL_1537	-	ribosomal protein L11 methyltransferase
1514	 41.03	0	1752542..1753009	-	155	126209002	-	APL_1538	-	acetyltransferase
1515	 41.76	0	1753013..1753273	-	86	126209003	-	APL_1539	-	hypothetical protein
1516	 46.82	+1	1753394..1754854	-	486	126209004	tldD	APL_1540	-	TldD-like protein
1517	 43.10	0	1754984..1756243	+	419	126209005	tilS	APL_1541	-	tRNA(Ile)-lysidine synthase
1518	 40.16	0	1756562..1757455	-	297	126209006	xerD	APL_1542	-	site-specific tyrosine recombinase XerD
1519	 42.42	0	1764006..1764731	-	241	126209007	wecG	APL_1543	-	putative UDP-N-acetyl-D-mannosaminuronic acid transferase
1520	 39.25	0	1764715..1766049	-	444	126209008	-	APL_1544	-	putative entero common antigen polymerase
1521	 40.24	0	1766049..1767119	-	356	126209009	wecF	APL_1545	-	4-alpha-L-fucosyltransferase
1522	 43.36	0	1767397..1769052	+	551	126209010	hcp	APL_1546	-	hydroxylamine reductase
1523	 45.10	0	1769175..1770194	+	339	126209011	hcr	APL_1547	-	HCP oxidoreductase, NADH-dependent
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.