IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1346	 43.58	0	1567409..1568140	-	243	126208834	ccmC	APL_1370	-	heme exporter protein C
1347	 43.89	0	1568191..1568853	-	220	126208835	ccmB	APL_1371	-	heme exporter protein B
1348	 39.31	0	1568850..1569485	-	211	126208836	ccmA	APL_1372	-	cytochrome c biogenesis protein CcmA
1349	 36.85	-1	1569626..1570336	-	236	126208837	-	APL_1373	-	DNA replication initiation factor
1350	 39.81	0	1576322..1577155	+	277	126208838	-	APL_1374	-	hypothetical protein
1351	 41.86	0	1577337..1577594	+	85	126208839	oadG	APL_1375	-	oxaloacetate decarboxylase subunit gamma
1352	 44.44	0	1577610..1579418	+	602	126208840	oadA	APL_1376	-	pyruvate carboxylase subunit B
1353	 45.90	+1	1579435..1580739	+	434	126208841	oadB	APL_1377	-	oxaloacetate decarboxylase beta chain
1354	 37.04	-1	1580872..1581195	+	107	126208842	phnA	APL_1378	-	alkylphosphonate uptake protein
1355	 44.54	0	1581367..1582767	+	466	126208843	ccp	APL_1379	-	cytochrome c peroxidase
1356	 42.18	0	1582833..1583126	-	97	126208844	-	APL_1380	-	hypothetical protein
1357	 42.32	0	1583128..1583661	-	177	126208845	-	APL_1381	-	hypothetical protein
1358	 37.72	-1	1583783..1584124	-	113	126208846	-	APL_1382	-	hypothetical protein
1359	 42.76	0	1584180..1584932	-	250	126208847	trmB	APL_1383	-	tRNA (guanine-N(7))-methyltransferase
1360	 44.69	0	1584980..1585930	-	316	126208848	fabH	APL_1384	-	3-oxoacyl-(acyl carrier protein) synthase III
1361	 42.42	0	1585942..1586976	-	344	126208849	plsX	APL_1385	-	putative glycerol-3-phosphate acyltransferase PlsX
1362	 39.18	0	1587001..1587171	-	56	126208850	rpmF	APL_1386	-	50S ribosomal protein L32
1363	 42.80	0	1587189..1587716	-	175	126208851	-	APL_1387	-	hypothetical protein
1364	 40.28	0	1587936..1588727	+	263	126208852	-	APL_1388	-	ABC transporter permease
1365	 41.94	0	1588913..1590085	+	390	126208853	-	APL_1389	-	hypothetical protein
1366	 44.03	0	1590464..1591978	+	504	126208854	-	APL_1390	-	sodium-dependent transporter
1367	 44.96	0	1592366..1593337	+	323	126208855	-	APL_1391	-	PTS system mannose-specific EIIAB component
1368	 47.69	+1	1593350..1594150	+	266	126208856	ptnC	APL_1392	-	mannose permease IIC component
1369	 44.44	0	1594164..1595000	+	278	126208857	ptnD	APL_1393	-	mannose-specific PTS system protein IID
1370	 35.29	-1	1595099..1595557	+	152	126208858	-	APL_1394	-	hypothetical protein
1371	 42.70	0	1595554..1596759	+	401	126208859	manA	APL_1395	-	mannose-6-phosphate isomerase
1372	 38.76	0	1596821..1597336	+	171	126208860	-	APL_1396	-	hypothetical protein
1373	 30.67	-2	1597474..1598262	-	262	126208861	-	APL_1397	-	hypothetical protein
1374	 45.15	0	1598554..1599738	-	394	126208862	tufB	APL_1398	-	elongation factor Tu
1375	 44.44	0	1599800..1601905	-	701	126208863	fusA	APL_1399	-	elongation factor G
1376	 43.52	0	1602005..1602475	-	156	126208864	rpsG	APL_1400	-	30S ribosomal protein S7
1377	 43.73	0	1602612..1602986	-	124	126208865	rpsL	APL_1401	-	30S ribosomal protein S12
1378	 44.38	0	1603108..1604067	-	319	126208866	rfaC	APL_1402	-	ADP-heptose:LPS heptosyl transferase I
1379	 45.86	+1	1604143..1605180	-	345	126208867	rfaF	APL_1403	-	ADP-heptose:LPS heptosyltransferase II
1380	 43.21	0	1605262..1605666	-	134	126208868	oapB	APL_1404	-	opacity associated protein B
1381	 44.32	0	1605788..1607179	-	463	126208869	oapA	APL_1405	-	opacity associated protein A
1382	 41.45	0	1607480..1607824	+	114	126208870	comEA	APL_1406	-	DNA uptake protein
1383	 43.51	0	1607975..1608868	+	297	126208871	psd	APL_1407	-	phosphatidylserine decarboxylase
1384	 42.66	0	1609024..1611297	+	757	126208872	gshA	APL_1408	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
1385	 34.30	-2	1611389..1612009	-	206	126208873	-	APL_1409	-	CueR-like transcriptional regulator
1386	 43.06	0	1612209..1613411	+	400	126208874	tnaB	APL_1410	-	ttryptophan-specific transport protein
1387	 42.52	0	1613475..1613768	-	97	126208875	-	APL_1411	-	hypothetical protein
1388	 43.74	0	1613908..1614810	+	300	126208876	-	APL_1412	-	putative oxidoreductase
1389	 42.17	0	1614873..1616648	-	591	126208877	-	APL_1413	-	putative long-chain-fatty-acid--CoA ligase
1390	 45.33	0	1616829..1618304	-	491	126208878	mqo	APL_1414	-	malate:quinone oxidoreductase
1391	 39.86	0	1618412..1618825	-	137	126208879	-	APL_1415	-	hypothetical protein
1392	 46.78	+1	1619045..1619386	+	113	126208880	-	APL_1416	-	hypothetical protein
1393	 40.14	0	1619428..1619853	+	141	126208881	-	APL_1417	-	hypothetical protein
1394	 43.52	0	1619924..1620934	-	336	126208882	mglC	APL_1418	-	beta-methylgalactoside transporter inner membrane component
1395	 40.47	0	1620951..1622450	-	499	126208883	mglA	APL_1419	-	galactose/methyl galaxtoside transporter ATP-binding protein
1396	 41.89	0	1622513..1623505	-	330	126208884	mglB	APL_1420	-	D-galactose-binding periplasmic protein precursor
1397	 40.83	0	1623759..1624865	-	368	126208885	ompA	APL_1421	-	outer membrane protein P5 precursor
1398	 44.56	0	1625293..1628382	+	1029	126208886	-	APL_1422	-	hypothetical protein
1399	 46.71	+1	1628515..1628940	+	141	126208887	-	APL_1423	-	hypothetical protein
1400	 43.39	0	1629241..1630722	+	493	126208888	oxaA	APL_1424	-	putative inner membrane protein translocase component YidC
1401	 40.81	0	1631007..1631621	-	204	126208889	napC	APL_1425	-	cytochrome c-type protein NapC
1402	 42.79	0	1631633..1632055	-	140	126208890	napB	APL_1426	-	nitrate reductase cytochrome c-type subunit
1403	 45.30	0	1632074..1632967	-	297	126208891	napH	APL_1427	-	quinol dehydrogenase membrane component
1404	 46.36	+1	1632967..1633872	-	301	126208892	napG	APL_1428	-	quinol dehydrogenase periplasmic component
1405	 45.49	0	1634007..1636490	-	827	126208893	napA	APL_1429	-	nitrate reductase
1406	 40.37	0	1636522..1636791	-	89	126208894	napD	APL_1430	-	putative napD protein
1407	 44.82	0	1636794..1637324	-	176	126208895	napF	APL_1431	-	ferredoxin-type protein NapF
1408	 41.15	0	1637523..1638098	+	191	126208896	-	APL_1432	-	putative NAD(P)H oxidoreductase
1409	 38.70	0	1638234..1639016	-	260	126208897	-	APL_1433	-	transposase
1410	 40.20	0	1639058..1639567	-	169	126208898	-	APL_1434	-	hypothetical protein
1411	 42.30	0	1639673..1640185	-	170	126208899	-	APL_1435	-	hypothetical protein
1412	 45.38	0	1640346..1643333	-	995	126208900	rne	APL_1436	-	ribonuclease E
1413	 40.77	0	1643803..1644810	+	335	126208901	-	APL_1437	-	hypothetical protein
1414	 35.06	-1	1644880..1645401	-	173	126208902	-	APL_1438	-	hypothetical protein
1415	 45.90	+1	1645551..1647014	-	487	126208903	ubiD	APL_1439	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1416	 42.54	0	1647160..1648137	+	325	126208904	znuA	APL_1440	-	high-affinity zinc transporter periplasmic component
1417	 30.39	-2	1648236..1648847	-	203	126208905	-	APL_1441	-	hypothetical protein
1418	 39.32	0	1649278..1650714	-	478	126208906	apxID	APL_1442	-	RTX-I toxin secretion component
1419	 40.63	0	1650723..1652846	-	707	126208907	apxIB	APL_1443	-	toxin RTX-I translocation ATP-binding protein
1420	 40.57	0	1652927..1655995	-	1022	126208908	apxIA	APL_1444	-	RTX-I toxin determinant A
1421	 36.61	-1	1656005..1656523	-	172	126208909	apxIC	APL_1445	-	RTX-I toxin-activating lysine-acyltransferase ApxIC
1422	 41.31	0	1656814..1657854	+	346	126208910	afuA	APL_1446	-	ABC-type Fe3+ transport system, periplasmic component
1423	 41.67	0	1657959..1660022	+	687	126208911	afuB	APL_1447	-	ferric transport system permease protein fbpB
1424	 42.98	0	1660069..1661115	+	348	126208912	fbpC	APL_1448	-	ferric transporter ATP-binding subunit
1425	 44.76	0	1661206..1662570	-	454	126208913	mpl	APL_1449	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
1426	 42.99	0	1662693..1663697	+	334	126208914	fbp	APL_1450	-	fructose-1,6-bisphosphatase
1427	 30.39	-2	1663853..1664464	-	203	126208915	-	APL_1451	-	hypothetical protein
1428	 43.74	0	1664928..1666157	-	409	126208916	serA	APL_1452	-	D-3-phosphoglycerate dehydrogenase
1429	 47.27	+1	1666301..1666960	-	219	126208917	rpiA	APL_1453	-	ribose-5-phosphate isomerase A
1430	 45.92	+1	1667107..1668441	-	444	126208918	mrsA	APL_1454	-	phosphoglucosamine mutase
1431	 43.55	0	1668513..1670039	-	508	126208919	ilvA	APL_1455	-	threonine dehydratase
1432	 46.73	+1	1670166..1670762	-	198	126208920	slyD	APL_1456	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
1433	 47.02	+1	1671115..1671801	-	228	126208921	aqpZ	APL_1457	-	aquaporin Z
1434	 38.77	0	1671947..1672663	-	238	126208922	-	APL_1458	-	hypothetical protein
1435	 45.50	+1	1672705..1673460	-	251	126208923	-	APL_1459	-	hypothetical protein
1436	 35.69	-1	1673509..1674525	+	338	126208924	-	APL_1460	-	hypothetical protein
1437	 40.04	0	1674525..1675433	+	302	126208925	menA	APL_1461	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1438	 43.57	0	1675512..1675853	-	113	126208926	-	APL_1462	-	iron-sulfur cluster insertion protein ErpA
1439	 30.56	-2	1676054..1676845	+	263	126208927	-	APL_1463	-	putative ABC-transporter
1440	 35.38	-1	1676845..1677576	+	243	126208928	wzm	APL_1464	-	ABC transporter integral membrane subunit
1441	 27.44	-2	1677587..1678366	+	259	126208929	-	APL_1465	-	hypothetical protein
1442	 23.95	-2	1679260..1679664	+	134	126208930	-	APL_1466	-	hypothetical protein
1443	 38.99	0	1679666..1680814	+	382	126208931	rfbD	APL_1467	-	putative UDP-galactopyranose mutase
1444	 28.60	-2	1680877..1681446	+	189	126208932	-	APL_1468	-	hypothetical protein
1445	 33.77	-2	1681443..1682366	+	307	126208933	-	APL_1469	-	glycosyl transferase family protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.