IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1220	 42.26	0	1429516..1430310	+	264	126208708	-	APL_1242	-	putative deoxyribonuclease
1221	 45.66	+1	1430369..1431739	-	456	126208709	gor	APL_1243	-	glutathione reductase
1222	 30.56	-2	1432223..1432834	+	203	126208710	-	APL_1244	-	hypothetical protein
1223	 36.61	-1	1432923..1433441	-	172	126208711	-	APL_1245	-	hypothetical protein
1224	 44.91	0	1433543..1434181	-	212	126208712	-	APL_1246	-	hypothetical protein
1225	 42.18	0	1434344..1434637	-	97	126208713	-	APL_1247	-	hypothetical protein
1226	 44.39	0	1434637..1435296	-	219	126208714	-	APL_1248	-	AzlC family protein
1227	 42.70	0	1435370..1436170	-	266	126208715	sapF	APL_1249	-	peptide transport system ATP-binding protein SapF
1228	 44.01	0	1436286..1437362	-	358	126208716	fba	APL_1250	-	fructose-bisphosphate aldolase
1229	 45.32	0	1437463..1438638	-	391	126208717	pgk	APL_1251	-	phosphoglycerate kinase
1230	 42.12	0	1438796..1440184	-	462	126208718	-	APL_1252	-	hypothetical protein
1231	 45.25	0	1440415..1441689	-	424	126208719	-	APL_1253	-	putative sodium/sulphate transporter
1232	 42.74	0	1441994..1443385	-	463	126208720	-	APL_1254	-	hypothetical protein
1233	 45.56	+1	1443581..1445494	-	637	126208721	parE	APL_1255	-	DNA topoisomerase IV subunit B
1234	 39.91	0	1445572..1446864	-	430	126208722	phoR	APL_1256	-	phosphate regulon sensor protein PhoR
1235	 39.56	0	1446864..1447505	-	213	126208723	phoB	APL_1257	-	phosphate regulon transcriptional regulatory protein PhoB
1236	 39.62	0	1447685..1448464	-	259	126208724	pstB	APL_1258	-	phosphate import ATP-binding protein PstB
1237	 44.84	0	1448473..1449324	-	283	126208725	pstA	APL_1259	-	phosphate transport system permease protein PstA
1238	 42.45	0	1449324..1450277	-	317	126208726	pstC	APL_1260	-	phosphate transport system permease protein PstC
1239	 42.82	0	1450428..1451471	-	347	126208727	pstS	APL_1261	-	phosphate-binding periplasmic protein precursor
1240	 39.02	0	1451604..1451990	-	128	126208728	-	APL_1262	-	MerR family transcriptional regulator
1241	 39.74	0	1452076..1452528	+	150	126208729	-	APL_1263	-	hypothetical protein
1242	 44.78	0	1452546..1452746	+	66	126208730	-	APL_1264	-	putative cation transport ATPase
1243	 47.61	+1	1452985..1455135	+	716	126208731	copA	APL_1265	-	copper-transporting P-type ATPase
1244	 44.40	0	1455233..1456054	-	273	126208732	-	APL_1266	-	putative dehydrogenase
1245	 44.97	0	1456082..1456657	-	191	126208733	-	APL_1267	-	hypothetical protein
1246	 43.40	0	1456773..1458629	+	618	126208734	sppA	APL_1268	-	protease 4
1247	 46.48	+1	1458764..1459531	+	255	126208735	-	APL_1269	-	putative ribonuclease
1248	 46.14	+1	1459562..1460053	+	163	126208736	sprT	APL_1270	-	hypothetical protein
1249	 44.13	0	1460158..1461444	+	428	126208737	ndh	APL_1271	-	NADH dehydrogenase
1250	 45.04	0	1461636..1463975	-	779	126208738	-	APL_1272	-	transcriptional accessory protein
1251	 39.89	0	1464050..1464598	-	182	126208739	-	APL_1273	-	putative fimbrial biogenesis and twitching motility protein PilF-like protein
1252	 42.72	0	1464652..1465833	-	393	126208740	-	APL_1274	-	hypothetical protein
1253	 43.82	0	1466737..1468176	+	479	126208741	gltX	APL_1275	-	glutamyl-tRNA synthetase
1254	 41.67	0	1468514..1468765	+	83	126208742	-	APL_1276	-	antitoxin YefM
1255	 41.07	0	1469179..1469346	-	55	126208743	-	APL_1277	-	hypothetical protein
1256	 43.83	0	1469348..1470328	-	326	126208744	lpxK	APL_1278	-	tetraacyldisaccharide 4'-kinase
1257	 43.41	0	1470422..1471681	-	419	126208745	clpX	APL_1279	-	ATP-dependent protease ATP-binding subunit
1258	 43.99	0	1471681..1472271	-	196	126208746	clpP	APL_1280	-	ATP-dependent Clp protease proteolytic subunit
1259	 39.69	0	1472393..1472785	+	130	126208747	-	APL_1281	-	hypothetical protein
1260	 44.19	0	1473144..1473917	-	257	126208748	dnaQ	APL_1282	-	DNA polymerase III subunit epsilon
1261	 45.30	0	1474004..1475674	-	556	126208749	-	APL_1283	-	putative ABC transporter ATP-binding protein
1262	 48.67	+1	1475839..1476177	+	112	126208750	-	APL_1284	-	putative DNA-binding protein
1263	 41.73	0	1476170..1476538	+	122	126208751	-	APL_1285	-	hypothetical protein
1264	 44.94	0	1477025..1478299	-	424	126208752	murA	APL_1286	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1265	 40.23	0	1478431..1478691	-	86	126208753	-	APL_1287	-	hypothetical protein
1266	 34.75	-1	1478704..1479057	-	117	126208754	-	APL_1288	-	hypothetical protein
1267	 39.28	0	1479067..1479705	-	212	126208755	-	APL_1289	-	hypothetical protein
1268	 39.77	0	1479783..1480310	-	175	126208756	-	APL_1290	-	hypothetical protein
1269	 44.68	0	1480329..1481033	-	234	126208757	-	APL_1291	-	hypothetical protein
1270	 44.40	0	1481098..1481901	-	267	126208758	-	APL_1292	-	ABC transporter ATP-binding protein
1271	 43.23	0	1482162..1483556	+	464	126208759	htrA	APL_1293	-	periplasmic serine protease do/hhoA-like precursor
1272	 42.57	0	1483595..1484482	-	295	126208760	-	APL_1294	-	hypothetical protein
1273	 43.07	0	1484482..1484943	-	153	126208761	argR	APL_1295	-	arginine repressor
1274	 46.02	+1	1485137..1486090	+	317	126208762	mdh	APL_1296	-	malate dehydrogenase
1275	 40.00	0	1486180..1486449	+	89	126208763	-	APL_1297	-	hypothetical protein
1276	 44.34	0	1486517..1487161	-	214	126208764	adk	APL_1298	-	adenylate kinase
1277	 39.27	0	1487313..1489436	-	707	126208765	-	APL_1299	-	TonB dependent/ligand-gated channel
1278	 42.70	0	1489613..1490893	-	426	126208766	-	APL_1300	-	hypothetical protein
1279	 38.74	0	1491032..1492048	-	338	126208767	galE	APL_1301	-	UDP-glucose 4-epimerase
1280	 44.88	0	1492112..1494163	-	683	126208768	ligA	APL_1302	-	NAD-dependent DNA ligase LigA
1281	 44.11	0	1494227..1495237	-	336	126208769	zipA	APL_1303	-	cell division protein ZipA
1282	 44.22	0	1495357..1496238	+	293	126208770	cysZ	APL_1304	-	putative sulfate transport protein CysZ
1283	 43.51	0	1496719..1498173	-	484	126208771	gnd	APL_1305	-	6-phosphogluconate dehydrogenase
1284	 29.58	-2	1498244..1498696	-	150	126208772	-	APL_1306	-	hypothetical protein
1285	 47.09	+1	1499927..1501249	-	440	126208773	-	APL_1309	-	putative permease
1286	 41.92	0	1501382..1502080	-	232	126208774	pgl	APL_1310	-	6-phosphogluconolactonase
1287	 44.35	0	1502152..1503639	-	495	126208775	zwf	APL_1311	-	glucose-6-phosphate 1-dehydrogenase
1288	 43.63	0	1503711..1504526	-	271	126208776	cysQ	APL_1312	-	CysQ-like protein
1289	 44.09	0	1504539..1505096	-	185	126208777	nudE	APL_1313	-	ADP-ribose diphosphatase NudE
1290	 46.42	+1	1505239..1505643	+	134	126208778	hslR	APL_1314	-	heat shock-like protein 15
1291	 43.55	0	1505774..1506664	+	296	126208779	hslO	APL_1315	-	Hsp33-like chaperonin
1292	 43.60	0	1506732..1508066	-	444	126208780	dcuB2	APL_1316	-	anaerobic C4-dicarboxylate transporter
1293	 44.78	0	1508919..1509923	+	334	126208781	arcB	APL_1317	-	ornithine carbamoyltransferase
1294	 46.94	+1	1509945..1510892	+	315	126208782	arcC	APL_1318	-	carbamate kinase
1295	 45.78	+1	1511140..1512561	-	473	126208783	ptsB	APL_1319	-	PTS system sucrose-specific EIIBC component
1296	 40.47	0	1512752..1513396	-	214	126208784	thiQ	APL_1320	-	thiamine transport ATP-binding protein ThiQ
1297	 39.18	0	1513393..1515018	-	541	126208785	thiP	APL_1321	-	thiamine transporter membrane protein
1298	 40.31	0	1515255..1515512	+	85	126208786	ptsH	APL_1322	-	PTS system phosphocarrier protein HPr
1299	 42.86	0	1515636..1517357	+	573	126208787	ptsI	APL_1323	-	phosphoenolpyruvate-protein phosphotransferase
1300	 40.92	0	1517442..1517942	+	166	126208788	crr	APL_1324	-	glucose-specific PTS system component
1301	 45.10	0	1518127..1519554	+	475	126208789	-	APL_1325	-	hypothetical protein
1302	 44.47	0	1519784..1521982	+	732	126208790	uvrD	APL_1326	-	DNA-dependent helicase II
1303	 41.73	0	1522186..1522995	+	269	126208791	hypB	APL_1327	-	hydrogenase nickel incorporation protein HypB
1304	 42.20	0	1523007..1524122	+	371	126208792	hypD	APL_1328	-	hydrogenase isoenzymes formation protein HypD
1305	 42.80	0	1524124..1525137	+	337	126208793	hypE	APL_1329	-	hydrogenase isoenzymes formation protein HypE
1306	 41.95	0	1525217..1527502	-	761	126208794	hypF	APL_1330	-	carbamoyltransferase HypF
1307	 45.23	0	1527737..1528879	+	380	126208795	hyaA	APL_1331	-	hydrogenase 2 small subunit
1308	 44.03	0	1528872..1529909	+	345	126208796	hybA	APL_1332	-	hydrogenase 2 protein HybA
1309	 41.20	0	1529902..1531083	+	393	126208797	hybB	APL_1333	-	putative hydrogenase 2 b cytochrome subunit
1310	 42.28	0	1531080..1532789	+	569	126208798	hyaB	APL_1334	-	hydrogenase 2 large subunit
1311	 40.96	0	1532789..1533286	+	165	126208799	hyaD	APL_1335	-	hydrogenase 2 maturation endopeptidase
1312	 38.89	0	1533279..1533782	+	167	126208800	hybE	APL_1336	-	hydrogenase 2-specific chaperone
1313	 39.43	0	1533810..1534088	+	92	126208801	hybG	APL_1337	-	hydrogenase 2 accessory protein HypG
1314	 40.94	0	1534183..1534524	-	113	126208802	hybF	APL_1338	-	putative hydrogenase nickel incorporation protein HybF
1315	 44.75	0	1535447..1538896	-	1149	126208803	mfd	APL_1339	-	transcription-repair coupling factor
1316	 41.99	0	1538998..1541607	+	869	126208804	pepN	APL_1340	-	aminopeptidase N
1317	 44.33	0	1541745..1542335	-	196	126208805	-	APL_1341	-	putative glycerol-3-phosphate acyltransferase PlsY
1318	 41.24	0	1542407..1542760	+	117	126208806	folB	APL_1342	-	dihydroneopterin aldolase
1319	 43.62	0	1542869..1543762	+	297	126208807	cdd	APL_1343	-	cytidine deaminase
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.