IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1163	 32.48	-2	1362278..1363678	+	466	126208651	-	APL_1183	-	hypothetical protein
1164	 29.92	-2	1363681..1364178	+	165	126208652	-	APL_1184	-	hypothetical protein
1165	 31.01	-2	1364192..1364836	+	214	126208653	-	APL_1185	-	hypothetical protein
1166	 45.64	+1	1365058..1365951	-	297	126208654	-	APL_1186	-	putative transcriptional regulator
1167	 44.81	0	1366076..1366528	+	150	126208655	-	APL_1187	-	hypothetical protein
1168	 36.18	-1	1366651..1367283	-	210	126208656	-	APL_1188	-	hypothetical protein
1169	 41.61	0	1367935..1368357	+	140	126208657	-	APL_1189	-	hypothetical protein
1170	 45.33	0	1368533..1369432	-	299	126208658	-	APL_1190	-	putative transcriptional regulator LysR-like protein
1171	 45.29	0	1369523..1370584	+	353	126208659	namA	APL_1191	-	NADPH dehydrogenase
1172	 45.43	0	1370654..1371703	+	349	126208660	-	APL_1192	-	hypothetical protein
1173	 31.60	-2	1371916..1373130	-	404	126208661	-	APL_1193	-	putative type I restriction-modification system, S subunit
1174	 43.44	0	1373145..1374797	-	550	126208662	-	APL_1194	-	type I restriction-modification system, M subunit
1175	 37.91	-1	1374794..1376674	-	626	126208663	-	APL_1195	-	hypothetical protein
1176	 40.86	0	1376676..1379810	-	1044	126208664	-	APL_1196	-	type I restriction enzyme, R subunit
1177	 43.71	0	1379926..1380792	-	288	126208665	-	APL_1197	-	3-hydroxyacid dehydrogenase
1178	 41.63	0	1381046..1381708	+	220	126208666	-	APL_1198	-	putative NAD(P)H nitroreductase
1179	 41.59	0	1381862..1382479	+	205	126208667	-	APL_1199	-	hypothetical protein
1180	 34.51	-2	1382582..1383007	-	141	126208668	-	APL_1200	-	putative DNA mismatch endonuclease
1181	 33.87	-2	1383014..1384675	-	553	126208669	-	APL_1201	-	hypothetical protein
1182	 38.54	0	1384691..1385785	-	364	126208670	-	APL_1202	-	modification methylase
1183	 40.07	0	1386211..1386774	+	187	126208671	-	APL_1203	-	hypothetical protein
1184	 46.74	+1	1386848..1387705	-	285	126208672	-	APL_1204	-	esterase
1185	 42.84	0	1387841..1388524	-	227	126208673	-	APL_1205	-	putative glutathione S-transferase
1186	 39.76	0	1388658..1389077	-	139	126208674	-	APL_1206	-	plasmid stability-like protein
1187	 45.74	+1	1389087..1389344	-	85	126208675	-	APL_1207	-	hypothetical protein
1188	 46.92	+1	1389494..1390612	-	372	126208676	adhC	APL_1208	-	putative alcohol dehydrogenase class 3
1189	 41.22	0	1390767..1392794	-	675	126208677	betT	APL_1209	-	putative choline-glycine betaine transporter
1190	 37.13	-1	1393091..1393801	+	236	126208678	-	APL_1210	-	hypothetical protein
1191	 40.02	0	1393801..1394637	+	278	126208679	-	APL_1211	-	hypothetical protein
1192	 45.36	0	1394716..1395663	-	315	126208680	tehA	APL_1212	-	potassium-tellurite ethidium and proflavin transporter
1193	 42.86	0	1395762..1396412	-	216	126208681	-	APL_1213	-	hypothetical protein
1194	 40.60	0	1396650..1397213	-	187	126208682	-	APL_1214	-	hypothetical protein
1195	 44.99	0	1397300..1399144	-	614	126208683	-	APL_1215	-	ABC transporter ATP-binding protein
1196	 42.94	0	1399250..1399759	-	169	126208684	luxS	APL_1216	-	S-ribosylhomocysteinase
1197	 43.79	0	1399814..1402480	-	888	126208685	-	APL_1217	-	hypothetical protein
1198	 38.44	0	1402628..1403077	-	149	126208686	fur	APL_1218	-	ferric uptake regulation protein
1199	 41.14	0	1403106..1403630	-	174	126208687	fldA	APL_1219	-	flavodoxin FldA
1200	 41.50	0	1403652..1403945	-	97	126208688	-	APL_1220	-	LexA regulated protein
1201	 43.61	0	1404145..1404621	-	158	126208689	-	APL_1221	-	hypothetical protein
1202	 44.11	0	1404705..1405706	+	333	126208690	-	APL_1222	-	aspartate-semialdehyde dehydrogenase
1203	 45.91	+1	1405767..1407062	+	431	126208691	-	APL_1223	-	putative inner membrane protein
1204	 42.17	0	1407172..1407522	+	116	126208692	-	APL_1224	-	hypothetical protein
1205	 30.80	-2	1408957..1409745	+	262	126208693	-	APL_1227	-	hypothetical protein
1206	 37.90	-1	1409885..1410103	-	72	126208694	infA	APL_1228	-	translation initiation factor IF-1
1207	 40.72	0	1410195..1410857	-	220	126208695	aphA	APL_1229	-	AphA-like protein
1208	 44.37	0	1410957..1411817	+	286	126208696	serB	APL_1230	-	phosphoserine phosphatase
1209	 42.89	0	1411876..1412367	+	163	126208697	-	APL_1231	-	nucleotide-binding protein
1210	 42.58	0	1412721..1415120	+	799	126208698	malP	APL_1232	-	maltodextrin phosphorylase
1211	 39.40	0	1415184..1417901	-	905	126208699	malT	APL_1233	-	HTH-type transcriptional regulator MalT
1212	 38.19	-1	1418016..1418900	-	294	126208700	-	APL_1234	-	maltose regulon periplasmic protein
1213	 39.61	0	1418968..1420242	-	424	126208701	lamB	APL_1235	-	maltoporin
1214	 40.53	0	1420312..1421451	-	379	126208702	malK	APL_1236	-	maltose/maltodextrin transporter ATP-binding protein
1215	 38.90	0	1421783..1422967	+	394	126208703	malE	APL_1237	-	maltose ABC transporter periplasmic protein
1216	 38.36	0	1423046..1424596	+	516	126208704	malF	APL_1238	-	maltose transporter membrane protein
1217	 42.54	0	1424647..1425537	+	296	126208705	malG	APL_1239	-	maltose transporter permease
1218	 41.01	0	1425628..1427646	+	672	126208706	malQ	APL_1240	-	4-alpha-glucanotransferase
1219	 42.34	0	1427864..1429450	+	528	126208707	-	APL_1241	-	hypothetical protein
1220	 42.26	0	1429516..1430310	+	264	126208708	-	APL_1242	-	putative deoxyribonuclease
1221	 45.66	+1	1430369..1431739	-	456	126208709	gor	APL_1243	-	glutathione reductase
1222	 30.56	-2	1432223..1432834	+	203	126208710	-	APL_1244	-	hypothetical protein
1223	 36.61	-1	1432923..1433441	-	172	126208711	-	APL_1245	-	hypothetical protein
1224	 44.91	0	1433543..1434181	-	212	126208712	-	APL_1246	-	hypothetical protein
1225	 42.18	0	1434344..1434637	-	97	126208713	-	APL_1247	-	hypothetical protein
1226	 44.39	0	1434637..1435296	-	219	126208714	-	APL_1248	-	AzlC family protein
1227	 42.70	0	1435370..1436170	-	266	126208715	sapF	APL_1249	-	peptide transport system ATP-binding protein SapF
1228	 44.01	0	1436286..1437362	-	358	126208716	fba	APL_1250	-	fructose-bisphosphate aldolase
1229	 45.32	0	1437463..1438638	-	391	126208717	pgk	APL_1251	-	phosphoglycerate kinase
1230	 42.12	0	1438796..1440184	-	462	126208718	-	APL_1252	-	hypothetical protein
1231	 45.25	0	1440415..1441689	-	424	126208719	-	APL_1253	-	putative sodium/sulphate transporter
1232	 42.74	0	1441994..1443385	-	463	126208720	-	APL_1254	-	hypothetical protein
1233	 45.56	+1	1443581..1445494	-	637	126208721	parE	APL_1255	-	DNA topoisomerase IV subunit B
1234	 39.91	0	1445572..1446864	-	430	126208722	phoR	APL_1256	-	phosphate regulon sensor protein PhoR
1235	 39.56	0	1446864..1447505	-	213	126208723	phoB	APL_1257	-	phosphate regulon transcriptional regulatory protein PhoB
1236	 39.62	0	1447685..1448464	-	259	126208724	pstB	APL_1258	-	phosphate import ATP-binding protein PstB
1237	 44.84	0	1448473..1449324	-	283	126208725	pstA	APL_1259	-	phosphate transport system permease protein PstA
1238	 42.45	0	1449324..1450277	-	317	126208726	pstC	APL_1260	-	phosphate transport system permease protein PstC
1239	 42.82	0	1450428..1451471	-	347	126208727	pstS	APL_1261	-	phosphate-binding periplasmic protein precursor
1240	 39.02	0	1451604..1451990	-	128	126208728	-	APL_1262	-	MerR family transcriptional regulator
1241	 39.74	0	1452076..1452528	+	150	126208729	-	APL_1263	-	hypothetical protein
1242	 44.78	0	1452546..1452746	+	66	126208730	-	APL_1264	-	putative cation transport ATPase
1243	 47.61	+1	1452985..1455135	+	716	126208731	copA	APL_1265	-	copper-transporting P-type ATPase
1244	 44.40	0	1455233..1456054	-	273	126208732	-	APL_1266	-	putative dehydrogenase
1245	 44.97	0	1456082..1456657	-	191	126208733	-	APL_1267	-	hypothetical protein
1246	 43.40	0	1456773..1458629	+	618	126208734	sppA	APL_1268	-	protease 4
1247	 46.48	+1	1458764..1459531	+	255	126208735	-	APL_1269	-	putative ribonuclease
1248	 46.14	+1	1459562..1460053	+	163	126208736	sprT	APL_1270	-	hypothetical protein
1249	 44.13	0	1460158..1461444	+	428	126208737	ndh	APL_1271	-	NADH dehydrogenase
1250	 45.04	0	1461636..1463975	-	779	126208738	-	APL_1272	-	transcriptional accessory protein
1251	 39.89	0	1464050..1464598	-	182	126208739	-	APL_1273	-	putative fimbrial biogenesis and twitching motility protein PilF-like protein
1252	 42.72	0	1464652..1465833	-	393	126208740	-	APL_1274	-	hypothetical protein
1253	 43.82	0	1466737..1468176	+	479	126208741	gltX	APL_1275	-	glutamyl-tRNA synthetase
1254	 41.67	0	1468514..1468765	+	83	126208742	-	APL_1276	-	antitoxin YefM
1255	 41.07	0	1469179..1469346	-	55	126208743	-	APL_1277	-	hypothetical protein
1256	 43.83	0	1469348..1470328	-	326	126208744	lpxK	APL_1278	-	tetraacyldisaccharide 4'-kinase
1257	 43.41	0	1470422..1471681	-	419	126208745	clpX	APL_1279	-	ATP-dependent protease ATP-binding subunit
1258	 43.99	0	1471681..1472271	-	196	126208746	clpP	APL_1280	-	ATP-dependent Clp protease proteolytic subunit
1259	 39.69	0	1472393..1472785	+	130	126208747	-	APL_1281	-	hypothetical protein
1260	 44.19	0	1473144..1473917	-	257	126208748	dnaQ	APL_1282	-	DNA polymerase III subunit epsilon
1261	 45.30	0	1474004..1475674	-	556	126208749	-	APL_1283	-	putative ABC transporter ATP-binding protein
1262	 48.67	+1	1475839..1476177	+	112	126208750	-	APL_1284	-	putative DNA-binding protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.