IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1113	 39.93	0	1307881..1309230	+	449	126208601	-	APL_1131	-	hypothetical protein
1114	 42.31	0	1309230..1310510	+	426	126208602	kdtA	APL_1132	-	3-deoxy-D-manno-octulosonic-acid transferase
1115	 45.49	0	1310512..1310988	+	158	126208603	coaD	APL_1133	-	phosphopantetheine adenylyltransferase
1116	 37.12	-1	1310991..1311545	+	184	126208604	orn	APL_1134	-	oligoribonuclease
1117	 40.85	0	1311553..1312044	+	163	126208605	-	APL_1135	-	hypothetical protein
1118	 39.44	0	1312068..1313213	+	381	126208606	amiB	APL_1136	-	putative N-acetylmuramoyl-L-alanine amidase AmiB precursor
1119	 41.19	0	1313292..1314932	-	546	126208607	pgi	APL_1137	-	glucose-6-phosphate isomerase
1120	 37.70	-1	1314969..1315220	-	83	126208608	-	APL_1138	-	hypothetical protein
1121	 40.85	0	1316031..1316855	-	274	126208609	aroE	APL_1139	-	shikimate 5-dehydrogenase
1122	 40.36	0	1316862..1317416	-	184	126208610	-	APL_1140	-	hypothetical protein
1123	 33.98	-2	1317939..1318247	-	102	126208611	-	APL_1141	-	hypothetical protein
1124	 37.50	-1	1318240..1318695	-	151	126208612	recX	APL_1142	-	regulatory protein RecX
1125	 42.44	0	1318766..1319896	-	376	126208613	recA	APL_1143	-	recombinase A
1126	 39.76	0	1320010..1320600	-	196	126208614	-	APL_1144	-	hypothetical protein
1127	 39.42	0	1320593..1321561	-	322	126208615	pabB	APL_1145	-	para-aminobenzoate synthase component I
1128	 41.71	0	1321696..1323330	+	544	126208616	rmuC	APL_1146	-	DNA recombination protein RmuC-like protein
1129	 40.68	0	1323314..1323898	+	194	126208617	trpG	APL_1147	-	para-aminobenzoate synthase component II
1130	 43.56	0	1324003..1324452	+	149	126208618	-	APL_1148	-	putative periplasmic protein
1131	 45.10	0	1324625..1326400	+	591	126208619	aspS	APL_1149	-	aspartyl-tRNA synthetase
1132	 41.19	0	1326434..1326904	+	156	126208620	ntpA	APL_1150	-	dATP pyrophosphohydrolase
1133	 46.02	+1	1326928..1327668	+	246	126208621	-	APL_1151	-	hypothetical protein
1134	 39.81	0	1327802..1328326	+	174	126208622	-	APL_1152	-	hypothetical protein
1135	 49.05	+1	1328410..1328988	+	192	126208623	ruvC	APL_1153	-	Holliday junction resolvase
1136	 43.23	0	1329028..1330542	-	504	126208624	-	APL_1154	-	putative zinc protease
1137	 44.11	0	1330700..1332973	-	757	126208625	metE	APL_1155	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1138	 44.30	0	1334889..1335818	+	309	126208626	metR	APL_1158	-	HTH-type transcriptional regulator MetR
1139	 37.53	-1	1335896..1336777	-	293	126208627	-	APL_1159	-	hypothetical protein
1140	 43.62	0	1336910..1337959	-	349	126208628	rluB	APL_1160	-	ribosomal large subunit pseudouridine synthase B
1141	 39.81	0	1338031..1338648	-	205	126208629	-	APL_1161	-	hypothetical protein
1142	 41.81	0	1339192..1340088	-	298	126208630	-	APL_1162	-	hypothetical protein
1143	 42.94	0	1340248..1341798	+	516	126208631	trpE	APL_1163	-	anthranilate synthase component I
1144	 41.84	0	1341812..1342399	+	195	126208632	trpG	APL_1164	-	anthranilate synthase component II
1145	 44.38	0	1342456..1343460	+	334	126208633	trpD	APL_1165	-	anthranilate phosphoribosyltransferase
1146	 39.68	0	1343503..1344258	+	251	126208634	-	APL_1166	-	putative ubiquinone/menaquinone biosynthesis methyltransferase
1147	 40.88	0	1344285..1345370	-	361	126208635	-	APL_1167	-	hypothetical protein
1148	 28.24	-2	1345566..1345781	+	71	126208636	-	APL_1168	-	hypothetical protein
1149	 45.78	+1	1345870..1346319	-	149	126208637	rplI	APL_1169	-	50S ribosomal protein L9
1150	 39.47	0	1346539..1346913	-	124	126208638	priB	APL_1170	-	primosomal replication protein N
1151	 44.27	0	1346888..1347262	-	124	126208639	rpsF	APL_1171	-	30S ribosomal protein S6
1152	 47.16	+1	1347552..1348838	+	428	126208640	purD	APL_1172	-	phosphoribosylamine--glycine ligase
1153	 42.86	0	1348930..1349622	-	230	126208641	pnuC	APL_1173	-	nicotinamide mononucleotide transporter
1154	 42.47	0	1349750..1350373	-	207	126208642	-	APL_1174	-	hypothetical protein
1155	 45.09	0	1350389..1351630	-	413	126208643	hisS	APL_1175	-	histidyl-tRNA synthetase
1156	 45.28	0	1351788..1352900	-	370	126208644	ispG	APL_1176	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1157	 44.48	0	1352910..1353878	-	322	126208645	-	APL_1177	-	hypothetical protein
1158	 43.29	0	1354158..1355714	+	518	126208646	-	APL_1178	-	putative integral membrane sulfate transporter
1159	 44.81	0	1356023..1357399	-	458	126208647	argH	APL_1179	-	argininosuccinate lyase
1160	 43.30	0	1357682..1358725	-	347	126208648	-	APL_1180	-	oxidoreductase
1161	 45.07	0	1358973..1360778	+	601	126208649	kefB	APL_1181	-	glutathione-regulated potassium-efflux system protein
1162	 37.63	-1	1360973..1362181	+	402	126208650	-	APL_1182	-	hypothetical protein
1163	 32.48	-2	1362278..1363678	+	466	126208651	-	APL_1183	-	hypothetical protein
1164	 29.92	-2	1363681..1364178	+	165	126208652	-	APL_1184	-	hypothetical protein
1165	 31.01	-2	1364192..1364836	+	214	126208653	-	APL_1185	-	hypothetical protein
1166	 45.64	+1	1365058..1365951	-	297	126208654	-	APL_1186	-	putative transcriptional regulator
1167	 44.81	0	1366076..1366528	+	150	126208655	-	APL_1187	-	hypothetical protein
1168	 36.18	-1	1366651..1367283	-	210	126208656	-	APL_1188	-	hypothetical protein
1169	 41.61	0	1367935..1368357	+	140	126208657	-	APL_1189	-	hypothetical protein
1170	 45.33	0	1368533..1369432	-	299	126208658	-	APL_1190	-	putative transcriptional regulator LysR-like protein
1171	 45.29	0	1369523..1370584	+	353	126208659	namA	APL_1191	-	NADPH dehydrogenase
1172	 45.43	0	1370654..1371703	+	349	126208660	-	APL_1192	-	hypothetical protein
1173	 31.60	-2	1371916..1373130	-	404	126208661	-	APL_1193	-	putative type I restriction-modification system, S subunit
1174	 43.44	0	1373145..1374797	-	550	126208662	-	APL_1194	-	type I restriction-modification system, M subunit
1175	 37.91	-1	1374794..1376674	-	626	126208663	-	APL_1195	-	hypothetical protein
1176	 40.86	0	1376676..1379810	-	1044	126208664	-	APL_1196	-	type I restriction enzyme, R subunit
1177	 43.71	0	1379926..1380792	-	288	126208665	-	APL_1197	-	3-hydroxyacid dehydrogenase
1178	 41.63	0	1381046..1381708	+	220	126208666	-	APL_1198	-	putative NAD(P)H nitroreductase
1179	 41.59	0	1381862..1382479	+	205	126208667	-	APL_1199	-	hypothetical protein
1180	 34.51	-2	1382582..1383007	-	141	126208668	-	APL_1200	-	putative DNA mismatch endonuclease
1181	 33.87	-2	1383014..1384675	-	553	126208669	-	APL_1201	-	hypothetical protein
1182	 38.54	0	1384691..1385785	-	364	126208670	-	APL_1202	-	modification methylase
1183	 40.07	0	1386211..1386774	+	187	126208671	-	APL_1203	-	hypothetical protein
1184	 46.74	+1	1386848..1387705	-	285	126208672	-	APL_1204	-	esterase
1185	 42.84	0	1387841..1388524	-	227	126208673	-	APL_1205	-	putative glutathione S-transferase
1186	 39.76	0	1388658..1389077	-	139	126208674	-	APL_1206	-	plasmid stability-like protein
1187	 45.74	+1	1389087..1389344	-	85	126208675	-	APL_1207	-	hypothetical protein
1188	 46.92	+1	1389494..1390612	-	372	126208676	adhC	APL_1208	-	putative alcohol dehydrogenase class 3
1189	 41.22	0	1390767..1392794	-	675	126208677	betT	APL_1209	-	putative choline-glycine betaine transporter
1190	 37.13	-1	1393091..1393801	+	236	126208678	-	APL_1210	-	hypothetical protein
1191	 40.02	0	1393801..1394637	+	278	126208679	-	APL_1211	-	hypothetical protein
1192	 45.36	0	1394716..1395663	-	315	126208680	tehA	APL_1212	-	potassium-tellurite ethidium and proflavin transporter
1193	 42.86	0	1395762..1396412	-	216	126208681	-	APL_1213	-	hypothetical protein
1194	 40.60	0	1396650..1397213	-	187	126208682	-	APL_1214	-	hypothetical protein
1195	 44.99	0	1397300..1399144	-	614	126208683	-	APL_1215	-	ABC transporter ATP-binding protein
1196	 42.94	0	1399250..1399759	-	169	126208684	luxS	APL_1216	-	S-ribosylhomocysteinase
1197	 43.79	0	1399814..1402480	-	888	126208685	-	APL_1217	-	hypothetical protein
1198	 38.44	0	1402628..1403077	-	149	126208686	fur	APL_1218	-	ferric uptake regulation protein
1199	 41.14	0	1403106..1403630	-	174	126208687	fldA	APL_1219	-	flavodoxin FldA
1200	 41.50	0	1403652..1403945	-	97	126208688	-	APL_1220	-	LexA regulated protein
1201	 43.61	0	1404145..1404621	-	158	126208689	-	APL_1221	-	hypothetical protein
1202	 44.11	0	1404705..1405706	+	333	126208690	-	APL_1222	-	aspartate-semialdehyde dehydrogenase
1203	 45.91	+1	1405767..1407062	+	431	126208691	-	APL_1223	-	putative inner membrane protein
1204	 42.17	0	1407172..1407522	+	116	126208692	-	APL_1224	-	hypothetical protein
1205	 30.80	-2	1408957..1409745	+	262	126208693	-	APL_1227	-	hypothetical protein
1206	 37.90	-1	1409885..1410103	-	72	126208694	infA	APL_1228	-	translation initiation factor IF-1
1207	 40.72	0	1410195..1410857	-	220	126208695	aphA	APL_1229	-	AphA-like protein
1208	 44.37	0	1410957..1411817	+	286	126208696	serB	APL_1230	-	phosphoserine phosphatase
1209	 42.89	0	1411876..1412367	+	163	126208697	-	APL_1231	-	nucleotide-binding protein
1210	 42.58	0	1412721..1415120	+	799	126208698	malP	APL_1232	-	maltodextrin phosphorylase
1211	 39.40	0	1415184..1417901	-	905	126208699	malT	APL_1233	-	HTH-type transcriptional regulator MalT
1212	 38.19	-1	1418016..1418900	-	294	126208700	-	APL_1234	-	maltose regulon periplasmic protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.