IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
64	 39.89	0	76770..78371	+	533	126207552	dppA	APL_0064	-	periplasmic dipeptide transport protein
65	 41.29	0	78499..79503	+	334	126207553	dppB	APL_0065	-	dipeptide transport system permease protein DppB
66	 45.45	0	79581..80471	+	296	126207554	dppC	APL_0066	-	dipeptide transport system permease protein DppC
67	 46.61	+1	80482..81468	+	328	126207555	dppD	APL_0067	-	dipeptide transporter ATP-binding subunit
68	 44.75	0	81481..82470	+	329	126207556	dppF	APL_0068	-	dipeptide transporter ATP-binding subunit
69	 38.69	0	82543..82953	-	136	126207557	psiE	APL_0069	-	phosphate-starvation-inducible protein PsiE
70	 40.44	0	83031..83663	-	210	126207558	-	APL_0070	-	hypothetical protein
71	 44.06	0	83718..84062	-	114	126207559	-	APL_0071	-	hypothetical protein
72	 46.24	+1	84149..85186	-	345	126207560	ilvE	APL_0072	-	branched-chain amino acid aminotransferase
73	 41.59	0	85329..85655	-	108	126207561	ydhD	APL_0073	-	monothiol glutaredoxin-like protein
74	 44.59	0	85727..86392	-	221	126207562	recR	APL_0074	-	recombination protein RecR
75	 46.97	+1	86403..86732	-	109	126207563	ybaB	APL_0075	-	uncharacterized protein YbaB
76	 47.87	+1	86901..87767	-	288	126207564	tonB2	APL_0076	-	protein TonB2
77	 37.69	-1	87777..88166	-	129	126207565	exbD2	APL_0077	-	biopolymer transport protein ExbD2
78	 39.29	0	88211..88663	-	150	126207566	exbB2	APL_0078	-	biopolymer transport protein ExbB2
79	 45.57	+1	88851..89177	+	108	126207567	glpE	APL_0079	-	thiosulfate sulfurtransferase GlpE
80	 39.36	0	89221..90066	+	281	126207568	-	APL_0080	-	putative thioredoxin-like protein
81	 48.28	+1	90141..90548	-	135	126207569	dhaM	APL_0081	-	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM
82	 44.66	0	90557..91183	-	208	126207570	dhaL	APL_0082	-	dihydroxyacetone kinase ADP-binding subunit
83	 45.19	0	91185..92255	-	356	126207571	dhaK	APL_0083	-	dihydroxyacetone kinase subunit DhaK
84	 44.65	0	92425..93378	+	317	126207572	trxB	APL_0084	-	thioredoxin reductase
85	 46.35	+1	93486..94238	+	250	126207573	kdsB	APL_0085	-	3-deoxy-manno-octulosonate cytidylyltransferase
86	 41.08	0	94362..94787	+	141	126207574	-	APL_0086	-	hypothetical protein
87	 43.71	0	94861..95631	-	256	126207575	nudC	APL_0087	-	NADH pyrophosphatase
88	 40.95	0	95649..96344	-	231	126207576	rluE	APL_0088	-	ribosomal large subunit pseudouridine synthase E
89	 42.86	0	96348..97166	-	272	126207577	rhaT	APL_0089	-	hypothetical protein
90	 37.85	-1	97196..97660	-	154	126207578	-	APL_0090	-	hypothetical protein
91	 41.59	0	97683..99014	-	443	126207579	pepQ	APL_0091	-	proline dipeptidase
92	 42.50	0	99038..99277	+	79	126207580	sirA	APL_0092	-	sulfurtransferase
93	 41.50	0	99327..99767	-	146	126207581	-	APL_0093	-	hypothetical protein
94	 41.87	0	99769..100389	-	206	126207582	engB	APL_0094	-	GTPase EngB
95	 43.17	0	100684..101100	-	138	126207583	-	APL_0095	-	hypothetical protein
96	 48.13	+1	101138..101968	-	276	126207584	-	APL_0096	-	zinc transporter family protein ZIP
97	 47.33	+1	102119..103954	-	611	126207585	ilvD	APL_0097	-	dihydroxy-acid dehydratase
98	 38.36	0	104072..104290	-	72	126207586	ilvM	APL_0098	-	acetolactate synthase 2 regulatory subunit
99	 45.93	+1	104311..105810	-	499	126207587	ilvG	APL_0099	-	acetolactate synthase isozyme II large subunit (AHAS-II)
100	 42.04	0	106390..107871	+	493	126207588	nrfA	APL_0100	-	cytochrome c nitrite reductase
101	 43.98	0	107892..108539	+	215	126207589	nrfB	APL_0101	-	cytochrome c-type protein NrfB
102	 46.17	+1	108539..109216	+	225	126207590	nrfC	APL_0102	-	nitrate reductase
103	 41.49	0	109216..110184	+	322	126207591	nrfD	APL_0103	-	nitrite reductase transmembrane protein
104	 43.65	0	110472..119936	+	3154	126207592	-	APL_0104	-	autotransporter adhesin
105	 46.10	+1	120177..121406	-	409	126207593	uraA	APL_0105	-	putative uracil permease
106	 45.31	0	121566..125171	-	1201	126207594	putA	APL_0106	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
107	 45.35	0	125274..126788	-	504	126207595	putP	APL_0107	-	sodium/proline symporter
108	 45.17	0	127363..128148	-	261	126207596	iclR	APL_0108	-	putative HTH-type transcriptional regulator
109	 40.45	0	128145..128720	-	191	126207597	-	APL_0109	-	hypothetical protein
110	 38.32	0	128991..129311	-	106	126207598	-	APL_0110	-	hypothetical protein
111	 42.75	0	129389..129940	+	183	126207599	-	APL_0111	-	hypothetical protein
112	 46.67	+1	130046..131110	+	354	126207600	hemE	APL_0112	-	uroporphyrinogen decarboxylase
113	 37.39	-1	131234..131824	+	196	126207601	-	APL_0113	-	hypothetical protein
114	 42.86	0	131960..132232	+	90	126207602	hupA	APL_0114	-	DNA-binding protein HU
115	 42.37	0	132285..133136	-	283	126207603	thyA	APL_0115	-	thymidylate synthase
116	 38.46	0	133224..133808	+	194	126207604	-	APL_0116	-	hypothetical protein
117	 45.60	+1	133904..134914	+	336	126207605	bioB	APL_0117	-	biotin synthase
118	 39.05	0	134978..135187	-	69	126207606	cspC	APL_0118	-	cold shock-like protein CspC
119	 41.35	0	135550..136098	+	182	126207607	proQ	APL_0119	-	putative solute/DNA competence effector
120	 40.54	0	136190..138202	+	670	126207608	prc	APL_0120	-	carboxy-terminal protease
121	 40.74	0	138299..139864	+	521	126207609	-	APL_0121	-	hypothetical protein
122	 43.96	0	140036..140590	+	184	126207610	-	APL_0122	-	hypothetical protein
123	 39.68	0	140608..141237	+	209	126207611	-	APL_0123	-	glyoxalase II family protein
124	 38.40	0	141240..141989	-	249	126207612	-	APL_0124	-	hypothetical protein
125	 35.73	-1	141986..142360	-	124	126207613	-	APL_0125	-	hypothetical protein
126	 40.71	0	142362..142727	-	121	126207614	-	APL_0126	-	HIT-like protein
127	 40.43	0	142799..143629	-	276	126207615	yfeD	APL_0127	-	putative iron transport system membrane protein
128	 42.69	0	143622..144476	-	284	126207616	yfeC	APL_0128	-	putative iron transport system membrane protein
129	 47.31	+1	144477..145070	-	197	126207617	rnhB	APL_0129	-	ribonuclease HII
130	 41.84	0	145093..146127	-	344	126207618	engC	APL_0130	-	ribosome-associated GTPase
131	 42.20	0	146637..147527	+	296	126207619	gcvA	APL_0131	-	DNA-binding transcriptional activator GcvA
132	 42.29	0	147527..148207	+	226	126207620	-	APL_0132	-	nucleotidase
133	 42.68	0	148207..149190	+	327	126207621	cysB	APL_0133	-	transcriptional regulator CysB
134	 36.12	-1	149191..149835	+	214	126207622	-	APL_0134	-	hypothetical protein
135	 45.52	+1	149916..150965	-	349	126207623	ansB	APL_0135	-	L-asparaginase II
136	 44.75	0	151269..152906	+	545	126207624	pyrG	APL_0136	-	CTP synthetase
137	 41.03	0	153009..153515	+	168	126207625	-	APL_0137	-	hypothetical protein
138	 41.63	0	153561..154163	-	200	126207626	leuD	APL_0138	-	isopropylmalate isomerase small subunit
139	 47.59	+1	154174..155583	-	469	126207627	leuC	APL_0139	-	isopropylmalate isomerase large subunit
140	 39.78	0	155925..157040	+	371	126207628	-	APL_0140	-	hypothetical protein
141	 44.81	0	157168..158430	+	420	126207629	-	APL_0141	-	hypothetical protein
142	 46.83	+1	158441..159574	+	377	126207630	glxK	APL_0142	-	glycerate kinase
143	 43.96	0	159593..159865	+	90	126207631	-	APL_0143	-	putative acylphosphatase
144	 42.18	0	159936..161495	-	519	126207632	-	APL_0144	-	ATP-dependent endonuclease
145	 44.42	0	161499..162878	-	459	126207633	-	APL_0145	-	hypothetical protein
146	 44.99	0	162938..163915	-	325	126207634	dusA	APL_0146	-	tRNA-dihydrouridine synthase A
147	 38.45	0	164268..165245	+	325	126207635	-	APL_0147	-	ribonucleoside-diphosphate reductase beta chain
148	 41.02	0	165232..166896	+	554	126207636	rnr1	APL_0148	-	ribonucleotide-diphosphate reductase subunit alpha
149	 44.00	0	167032..167631	-	199	126207637	-	APL_0149	-	putative DNA uptake protein
150	 44.67	0	168086..169435	+	449	126207638	nqrA	APL_0150	-	Na(+)-translocating NADH-quinone reductase subunit A
151	 43.96	0	169440..170672	+	410	126207639	nqrB	APL_0151	-	Na(+)-translocating NADH-quinone reductase subunit B
152	 41.60	0	170675..171448	+	257	126207640	nqrC	APL_0152	-	Na(+)-translocating NADH-quinone reductase subunit C
153	 41.83	0	171448..172071	+	207	126207641	nqrD	APL_0153	-	Na(+)-translocating NADH-quinone reductase subunit D
154	 40.03	0	172073..172669	+	198	126207642	nqrE	APL_0154	-	Na(+)-translocating NADH-quinone reductase subunit E
155	 41.46	0	172680..173909	+	409	126207643	nqrF	APL_0155	-	Na(+)-translocating NADH-quinone reductase subunit F
156	 39.83	0	174116..175147	+	343	126207644	apbE	APL_0156	-	thiamine biosynthesis lipoprotein ApbE precursor
157	 40.65	0	175160..175405	+	81	126207645	-	APL_0157	-	hypothetical protein
158	 42.82	0	175634..176803	+	389	126207646	trmU	APL_0158	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
159	 41.47	0	176876..178030	-	384	126207647	hcaT	APL_0159	-	putative 3-phenylpropionic acid transporter
160	 45.01	0	178027..178857	-	276	126207648	proC	APL_0160	-	pyrroline-5-carboxylate reductase
161	 39.71	0	179020..179928	+	302	126207649	rdgC	APL_0161	-	recombination associated protein
162	 45.05	0	179938..180543	+	201	126207650	-	APL_0162	-	putative phosphatase
163	 41.61	0	180719..182578	-	619	126207651	-	APL_0163	-	anaerobic ribonucleoside triphosphate reductase
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.