IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae L20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.85 STD DEV: 3.64
Actinobacillus pleuropneumoniae L20, complete genome - 1..2274482
2012 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1065	 45.86	+1	1250466..1251359	+	297	126208553	-	APL_1081	-	homocysteine/selenocysteine methylase
1066	 40.47	0	1251451..1252866	+	471	126208554	arcD	APL_1082	-	putative arginine/ornithine antiporter
1067	 43.43	0	1252962..1254368	+	468	126208555	arcD	APL_1083	-	putative arginine/ornithine antiporter
1068	 41.41	0	1254377..1255156	+	259	126208556	-	APL_1084	-	hypothetical protein
1069	 42.52	0	1255171..1256313	+	380	126208557	argE	APL_1085	-	acetylornithine deacetylase
1070	 39.81	0	1256394..1257041	-	215	126208558	ompW	APL_1086	-	outer membrane protein W precursor
1071	 44.64	0	1257302..1259875	+	857	126208559	clpB	APL_1087	-	chaperone ClpB
1072	 40.02	0	1259932..1260933	-	333	126208560	-	APL_1088	-	hypothetical protein
1073	 39.51	0	1260945..1261349	-	134	126208561	arsC	APL_1089	-	arsenate reductase
1074	 40.63	0	1261409..1261723	-	104	126208562	arsR	APL_1090	-	putative transcriptional regulator
1075	 39.85	0	1261851..1263278	-	475	126208563	aspA	APL_1091	-	aspartate ammonia-lyase
1076	 35.46	-1	1263419..1263700	-	93	126208564	-	APL_1092	-	hypothetical protein
1077	 29.47	-2	1263774..1264523	-	249	126208565	-	APL_1093	-	hypothetical protein
1078	 34.49	-2	1264888..1266276	+	462	126208566	-	APL_1094	-	putative transcription regulator protein
1079	 45.57	+1	1266330..1267367	-	345	126208567	purM	APL_1095	-	phosphoribosylaminoimidazole synthetase
1080	 37.21	-1	1267582..1268715	+	377	126208568	-	APL_1096	-	hypothetical protein
1081	 43.80	0	1268863..1269531	+	222	126208569	queC	APL_1097	-	queuosine biosynthesis protein QueC
1082	 41.61	0	1269524..1269946	+	140	126208570	-	APL_1098	-	putative 6-pyruvoyl tetrahydrobiopterin synthase
1083	 40.13	0	1270039..1270671	+	210	126208571	-	APL_1099	-	hypothetical protein
1084	 25.99	-2	1270812..1271369	-	185	126208572	-	APL_1100	-	hypothetical protein
1085	 46.00	+1	1272039..1273538	-	499	126208573	pepA	APL_1101	-	putative cytosol aminopeptidase
1086	 39.46	0	1273906..1274721	+	271	126208574	-	APL_1102	-	hypothetical protein
1087	 43.70	0	1274992..1276023	+	343	126208575	-	APL_1103	-	hypothetical protein
1088	 41.46	0	1276024..1277106	+	360	126208576	-	APL_1104	-	hypothetical protein
1089	 44.98	0	1277313..1280789	+	1158	126208577	dnaE	APL_1105	-	DNA polymerase III subunit alpha
1090	 45.60	+1	1281666..1282847	-	393	126208578	purT	APL_1106	-	phosphoribosylglycinamide formyltransferase 2
1091	 42.75	0	1282970..1285444	-	824	126208579	plsB	APL_1107	-	glycerol-3-phosphate acyltransferase
1092	 43.60	0	1285601..1286233	+	210	126208580	lexA	APL_1108	-	LexA repressor
1093	 42.44	0	1286293..1286973	+	226	126208581	mutH	APL_1109	-	DNA mismatch repair protein
1094	 43.31	0	1287059..1287790	+	243	126208582	-	APL_1110	-	hypothetical protein
1095	 43.83	0	1287905..1288942	+	345	126208583	nagZ	APL_1111	-	beta-hexosaminidase
1096	 41.07	0	1289023..1290198	+	391	126208584	rumB	APL_1112	-	23S rRNA methyluridine methyltransferase
1097	 41.95	0	1290405..1291715	+	436	126208585	eno	APL_1113	-	phosphopyruvate hydratase
1098	 38.77	0	1291740..1292420	+	226	126208586	-	APL_1114	-	hypothetical protein
1099	 43.07	0	1292434..1292844	+	136	126208587	-	APL_1115	-	hypothetical protein
1100	 43.62	0	1292903..1294711	-	602	126208588	recQ	APL_1116	-	ATP-dependent DNA helicase RecQ
1101	 43.79	0	1294796..1295101	-	101	126208589	cyaY	APL_1117	-	frataxin-like protein
1102	 48.66	+1	1295927..1296970	-	347	126208590	gcp	APL_1120	-	O-sialoglycoprotein endopeptidase
1103	 41.57	0	1297062..1297838	-	258	126208591	-	APL_1121	-	putative lipoprotein
1104	 48.47	+1	1297991..1298968	+	325	126208592	rluD	APL_1122	-	23S rRNA pseudouridine synthase D
1105	 36.97	-1	1299012..1299725	-	237	126208593	-	APL_1123	-	hypothetical protein
1106	 45.85	+1	1299786..1300760	-	324	126208594	pfkA	APL_1124	-	6-phosphofructokinase
1107	 44.06	0	1300870..1302072	-	400	126208595	-	APL_1125	-	putative cysteine desulfurase
1108	 41.06	0	1302072..1302770	-	232	126208596	-	APL_1126	-	putative micrococcal nuclease (thermonuclease)-like protein
1109	 44.44	0	1302836..1304203	-	455	126208597	-	APL_1127	-	Na+/alanine symporter
1110	 40.55	0	1304670..1305722	-	350	126208598	-	APL_1128	-	membrane protein
1111	 40.00	0	1305816..1306190	-	124	126208599	-	APL_1129	-	hypothetical protein
1112	 43.85	0	1306339..1307736	+	465	126208600	-	APL_1130	-	putative protease
1113	 39.93	0	1307881..1309230	+	449	126208601	-	APL_1131	-	hypothetical protein
1114	 42.31	0	1309230..1310510	+	426	126208602	kdtA	APL_1132	-	3-deoxy-D-manno-octulosonic-acid transferase
1115	 45.49	0	1310512..1310988	+	158	126208603	coaD	APL_1133	-	phosphopantetheine adenylyltransferase
1116	 37.12	-1	1310991..1311545	+	184	126208604	orn	APL_1134	-	oligoribonuclease
1117	 40.85	0	1311553..1312044	+	163	126208605	-	APL_1135	-	hypothetical protein
1118	 39.44	0	1312068..1313213	+	381	126208606	amiB	APL_1136	-	putative N-acetylmuramoyl-L-alanine amidase AmiB precursor
1119	 41.19	0	1313292..1314932	-	546	126208607	pgi	APL_1137	-	glucose-6-phosphate isomerase
1120	 37.70	-1	1314969..1315220	-	83	126208608	-	APL_1138	-	hypothetical protein
1121	 40.85	0	1316031..1316855	-	274	126208609	aroE	APL_1139	-	shikimate 5-dehydrogenase
1122	 40.36	0	1316862..1317416	-	184	126208610	-	APL_1140	-	hypothetical protein
1123	 33.98	-2	1317939..1318247	-	102	126208611	-	APL_1141	-	hypothetical protein
1124	 37.50	-1	1318240..1318695	-	151	126208612	recX	APL_1142	-	regulatory protein RecX
1125	 42.44	0	1318766..1319896	-	376	126208613	recA	APL_1143	-	recombinase A
1126	 39.76	0	1320010..1320600	-	196	126208614	-	APL_1144	-	hypothetical protein
1127	 39.42	0	1320593..1321561	-	322	126208615	pabB	APL_1145	-	para-aminobenzoate synthase component I
1128	 41.71	0	1321696..1323330	+	544	126208616	rmuC	APL_1146	-	DNA recombination protein RmuC-like protein
1129	 40.68	0	1323314..1323898	+	194	126208617	trpG	APL_1147	-	para-aminobenzoate synthase component II
1130	 43.56	0	1324003..1324452	+	149	126208618	-	APL_1148	-	putative periplasmic protein
1131	 45.10	0	1324625..1326400	+	591	126208619	aspS	APL_1149	-	aspartyl-tRNA synthetase
1132	 41.19	0	1326434..1326904	+	156	126208620	ntpA	APL_1150	-	dATP pyrophosphohydrolase
1133	 46.02	+1	1326928..1327668	+	246	126208621	-	APL_1151	-	hypothetical protein
1134	 39.81	0	1327802..1328326	+	174	126208622	-	APL_1152	-	hypothetical protein
1135	 49.05	+1	1328410..1328988	+	192	126208623	ruvC	APL_1153	-	Holliday junction resolvase
1136	 43.23	0	1329028..1330542	-	504	126208624	-	APL_1154	-	putative zinc protease
1137	 44.11	0	1330700..1332973	-	757	126208625	metE	APL_1155	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1138	 44.30	0	1334889..1335818	+	309	126208626	metR	APL_1158	-	HTH-type transcriptional regulator MetR
1139	 37.53	-1	1335896..1336777	-	293	126208627	-	APL_1159	-	hypothetical protein
1140	 43.62	0	1336910..1337959	-	349	126208628	rluB	APL_1160	-	ribosomal large subunit pseudouridine synthase B
1141	 39.81	0	1338031..1338648	-	205	126208629	-	APL_1161	-	hypothetical protein
1142	 41.81	0	1339192..1340088	-	298	126208630	-	APL_1162	-	hypothetical protein
1143	 42.94	0	1340248..1341798	+	516	126208631	trpE	APL_1163	-	anthranilate synthase component I
1144	 41.84	0	1341812..1342399	+	195	126208632	trpG	APL_1164	-	anthranilate synthase component II
1145	 44.38	0	1342456..1343460	+	334	126208633	trpD	APL_1165	-	anthranilate phosphoribosyltransferase
1146	 39.68	0	1343503..1344258	+	251	126208634	-	APL_1166	-	putative ubiquinone/menaquinone biosynthesis methyltransferase
1147	 40.88	0	1344285..1345370	-	361	126208635	-	APL_1167	-	hypothetical protein
1148	 28.24	-2	1345566..1345781	+	71	126208636	-	APL_1168	-	hypothetical protein
1149	 45.78	+1	1345870..1346319	-	149	126208637	rplI	APL_1169	-	50S ribosomal protein L9
1150	 39.47	0	1346539..1346913	-	124	126208638	priB	APL_1170	-	primosomal replication protein N
1151	 44.27	0	1346888..1347262	-	124	126208639	rpsF	APL_1171	-	30S ribosomal protein S6
1152	 47.16	+1	1347552..1348838	+	428	126208640	purD	APL_1172	-	phosphoribosylamine--glycine ligase
1153	 42.86	0	1348930..1349622	-	230	126208641	pnuC	APL_1173	-	nicotinamide mononucleotide transporter
1154	 42.47	0	1349750..1350373	-	207	126208642	-	APL_1174	-	hypothetical protein
1155	 45.09	0	1350389..1351630	-	413	126208643	hisS	APL_1175	-	histidyl-tRNA synthetase
1156	 45.28	0	1351788..1352900	-	370	126208644	ispG	APL_1176	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1157	 44.48	0	1352910..1353878	-	322	126208645	-	APL_1177	-	hypothetical protein
1158	 43.29	0	1354158..1355714	+	518	126208646	-	APL_1178	-	putative integral membrane sulfate transporter
1159	 44.81	0	1356023..1357399	-	458	126208647	argH	APL_1179	-	argininosuccinate lyase
1160	 43.30	0	1357682..1358725	-	347	126208648	-	APL_1180	-	oxidoreductase
1161	 45.07	0	1358973..1360778	+	601	126208649	kefB	APL_1181	-	glutathione-regulated potassium-efflux system protein
1162	 37.63	-1	1360973..1362181	+	402	126208650	-	APL_1182	-	hypothetical protein
1163	 32.48	-2	1362278..1363678	+	466	126208651	-	APL_1183	-	hypothetical protein
1164	 29.92	-2	1363681..1364178	+	165	126208652	-	APL_1184	-	hypothetical protein
41.85	MEAN

3.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.