IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
940	 73.68	+1	1056923..1057849	+	308	148259961	-	Acry_0951	-	Beta-N-acetylhexosaminidase
941	 67.39	0	1057846..1058541	+	231	148259962	-	Acry_0952	-	peptidase M50
942	 71.82	0	1058528..1059322	+	264	148259963	-	Acry_0953	-	chromosome segregation and condensation protein ScpA
943	 71.15	0	1059315..1059872	+	185	148259964	-	Acry_0954	-	putative transcriptional regulator
944	 66.42	0	1059960..1060364	+	134	148259965	-	Acry_0955	-	hypothetical protein
945	 60.97	-1	1060374..1061180	+	268	148259966	-	Acry_0956	-	Sec-independent protein translocase, TatC subunit
946	 68.36	0	1061173..1062474	+	433	148259967	-	Acry_0957	-	seryl-tRNA synthetase
947	 65.29	0	1062557..1063426	+	289	148259968	-	Acry_0958	-	beta-lactamase domain-containing protein
948	 72.15	0	1063445..1063882	+	145	148259969	-	Acry_0959	-	protein of unknown function DUF395, YeeE/YedE
949	 73.12	0	1063882..1064346	+	154	148259970	-	Acry_0960	-	protein of unknown function DUF395, YeeE/YedE
950	 64.95	0	1064295..1064702	-	135	148259971	-	Acry_0961	-	regulatory protein, ArsR
951	 68.62	0	1064853..1065620	-	255	148259972	-	Acry_0962	-	thiazole biosynthesis family protein
952	 69.08	0	1065622..1065828	-	68	148259973	-	Acry_0963	-	thiamine biosynthesis protein ThiS
953	 72.01	0	1065825..1066946	-	373	148259974	-	Acry_0964	-	glycine oxidase ThiO
954	 67.16	0	1066951..1068771	-	606	148259975	-	Acry_0965	-	thiamine biosynthesis protein ThiC
955	 66.30	0	1069191..1071074	+	627	148259976	-	Acry_0966	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
956	 69.23	0	1071149..1071811	+	220	148259977	-	Acry_0967	-	DSBA oxidoreductase
957	 68.44	0	1071854..1072813	+	319	148259978	-	Acry_0968	-	lytic murein transglycosylase
958	 75.45	+1	1072810..1073697	+	295	148259979	-	Acry_0969	-	rare lipoprotein A
959	 72.99	0	1073694..1074326	+	210	148259980	-	Acry_0970	-	dTMP kinase
960	 74.10	+1	1074326..1075294	+	322	148259981	-	Acry_0971	-	DNA polymerase III subunit delta'
961	 65.43	0	1075291..1076826	+	511	148259982	-	Acry_0972	-	methionyl-tRNA synthetase
962	 65.68	0	1076896..1077909	-	337	148259983	fliM	Acry_0973	-	flagellar motor switch protein FliM
963	 73.37	+1	1078066..1079571	+	501	148259984	-	Acry_0974	-	hypothetical protein
964	 72.99	0	1079578..1080210	-	210	148259985	-	Acry_0975	-	hypothetical protein
965	 70.40	0	1080207..1080983	-	258	148259986	-	Acry_0976	-	glycosyl transferase family protein
966	 68.68	0	1081211..1082305	-	364	148259987	-	Acry_0977	-	triple helix repeat-containing collagen
967	 69.77	0	1082634..1083566	+	310	148259988	-	Acry_0978	-	MarR family transcriptional regulator
968	 69.73	0	1083578..1084426	-	282	148259989	-	Acry_0979	-	metallophosphoesterase
969	 74.40	+1	1084420..1085208	-	262	148259990	-	Acry_0980	-	inositol monophosphatase
970	 73.35	+1	1085205..1086266	-	353	148259991	-	Acry_0981	-	ABC transporter related
971	 67.82	0	1087045..1087911	-	288	148259992	-	Acry_0983	-	binding-protein-dependent transport systems inner membrane component
972	 67.12	0	1087908..1089008	-	366	148259993	-	Acry_0984	-	extracellular solute-binding protein
973	 61.32	-1	1089166..1090362	-	398	148259994	-	Acry_0985	-	hypothetical protein
974	 60.05	-1	1090442..1091317	+	291	148259995	-	Acry_0986	-	small multidrug resistance protein
975	 60.95	-1	1091492..1092436	+	314	148259996	-	Acry_0987	-	substrate-binding region of ABC-type glycine betaine transport system
976	 65.16	0	1092499..1093359	+	286	148259997	-	Acry_0988	-	binding-protein-dependent transport systems inner membrane component
977	 68.98	0	1093356..1094609	+	417	148259998	-	Acry_0989	-	glycine betaine/L-proline ABC transporter, ATPase subunit
978	 70.22	0	1094624..1096087	+	487	148259999	-	Acry_0990	-	betaine aldehyde dehydrogenase
979	 69.26	0	1096102..1097760	+	552	148260000	-	Acry_0991	-	choline dehydrogenase
980	 69.62	0	1097884..1099137	+	417	148260001	-	Acry_0992	-	sarcosine oxidase beta subunit family protein
981	 68.63	0	1099149..1099403	+	84	148260002	-	Acry_0993	-	sarcosine oxidase, delta subunit, heterotetrameric
982	 72.77	0	1099400..1102396	+	998	148260003	-	Acry_0994	-	sarcosine oxidase alpha subunit family protein
983	 73.08	0	1102389..1102949	+	186	148260004	-	Acry_0995	-	sarcosine oxidase, gamma subunit
984	 72.28	0	1103025..1104395	+	456	148260005	-	Acry_0996	-	L-serine dehydratase 1
985	 78.08	+1	1104540..1105310	-	256	148260006	-	Acry_0997	-	electron transfer flavoprotein beta-subunit
986	 77.16	+1	1105307..1106383	-	358	148260007	-	Acry_0998	-	electron transfer flavoprotein, alpha subunit
987	 74.73	+1	1106380..1108227	-	615	148260008	-	Acry_0999	-	hypothetical protein
988	 70.05	0	1108227..1110263	-	678	148260009	-	Acry_1000	-	NADH:flavin oxidoreductase/NADH oxidase
989	 71.59	0	1110260..1111234	-	324	148260010	-	Acry_1001	-	AraC family transcriptional regulator
990	 68.77	0	1111234..1112325	-	363	148260011	-	Acry_1002	-	oxidoreductase FAD-binding subunit
991	 65.72	0	1112322..1113593	-	423	148260012	-	Acry_1003	-	Rieske (2Fe-2S) domain-containing protein
992	 71.88	0	1113737..1114792	-	351	148260013	-	Acry_1004	-	AraC family transcriptional regulator
993	 70.20	0	1114913..1116469	-	518	148260014	-	Acry_1005	-	sulfatase
994	 75.68	+1	1116554..1117507	+	317	148260015	-	Acry_1006	-	LysR family transcriptional regulator
995	 73.07	0	1117476..1118225	-	249	148260016	-	Acry_1007	-	ubiquinone biosynthesis O-methyltransferase
996	 68.47	0	1118323..1119540	+	405	148260017	-	Acry_1008	-	aspartate kinase
997	 71.97	0	1119537..1120574	+	345	148260018	-	Acry_1009	-	2-nitropropane dioxygenase, NPD
998	 73.90	+1	1120552..1122819	+	755	148260019	-	Acry_1010	-	phosphoenolpyruvate-protein phosphotransferase PtsP
999	 74.98	+1	1122940..1124250	+	436	148260020	-	Acry_1011	-	hypothetical protein
1000	 69.33	0	1124273..1125397	+	374	148260021	ispG	Acry_1012	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1001	 70.79	0	1125481..1126716	+	411	148260022	hisS	Acry_1013	-	histidyl-tRNA synthetase
1002	 71.86	0	1126729..1127787	+	352	148260023	-	Acry_1014	-	peptide chain release factor 1
1003	 75.68	+1	1127784..1128626	+	280	148260024	-	Acry_1015	-	HemK family modification methylase
1004	 69.21	0	1128867..1129298	+	143	148260025	-	Acry_1016	-	hypothetical protein
1005	 70.00	0	1129329..1130018	-	229	148260026	-	Acry_1017	-	protein tyrosine/serine phosphatase
1006	 74.85	+1	1130048..1130536	+	162	148260027	-	Acry_1018	-	CHAP domain-containing protein
1007	 73.84	+1	1130592..1132124	+	510	148260028	-	Acry_1019	-	integral membrane protein MviN
1008	 68.66	0	1132168..1133169	+	333	148260029	-	Acry_1020	-	tryptophanyl-tRNA synthetase
1009	 68.85	0	1133229..1134647	-	472	148260030	-	Acry_1021	-	phosphomannomutase
1010	 66.89	0	1134640..1135518	-	292	148260031	-	Acry_1022	-	UTP-glucose-1-phosphate uridylyltransferase
1011	 67.14	0	1135658..1136080	+	140	148260032	-	Acry_1023	-	dehydratase
1012	 69.77	0	1136088..1136990	-	300	148260033	-	Acry_1024	-	alpha/beta hydrolase fold
1013	 63.65	0	1137080..1137610	-	176	148260034	nusG	Acry_1025	-	transcription antitermination protein NusG
1014	 62.56	-1	1137620..1137814	-	64	148260035	-	Acry_1026	-	preprotein translocase, SecE subunit
1015	 71.79	0	1138376..1138648	+	90	148260036	-	Acry_1027	-	hypothetical protein
1016	 64.47	0	1138857..1139630	+	257	148260037	-	Acry_1028	-	hypothetical protein
1017	 64.42	0	1140129..1140752	-	207	148260038	-	Acry_1030	-	hypothetical protein
1018	 65.30	0	1141279..1144797	+	1172	148260039	-	Acry_1031	-	outer membrane autotransporter
1019	 74.82	+1	1145054..1146697	+	547	148260040	-	Acry_1032	-	acyl-CoA dehydrogenase domain-containing protein
1020	 72.51	0	1146712..1147737	+	341	148260041	-	Acry_1033	-	aldose 1-epimerase
1021	 66.96	0	1147894..1148925	+	343	148260042	-	Acry_1034	-	recA protein
1022	 53.47	-2	1149274..1149576	+	100	148260043	-	Acry_1035	-	hypothetical protein
1023	 53.86	-2	1149580..1149993	-	137	148260044	-	Acry_1036	-	hypothetical protein
1024	 77.73	+1	1150314..1151054	-	246	148260045	-	Acry_1037	-	hypothetical protein
1025	 68.37	0	1151079..1153715	+	878	148260046	alaS	Acry_1038	-	alanyl-tRNA synthetase
1026	 71.52	0	1153735..1157547	-	1270	148260047	-	Acry_1039	-	delta-1-pyrroline-5-carboxylate dehydrogenase
1027	 73.97	+1	1157682..1159583	+	633	148260048	-	Acry_1040	-	polysaccharide biosynthesis protein CapD
1028	 71.77	0	1159593..1160747	+	384	148260049	-	Acry_1041	-	DegT/DnrJ/EryC1/StrS aminotransferase
1029	 70.98	0	1160734..1161684	+	316	148260050	-	Acry_1042	-	proline iminopeptidase
1030	 76.12	+1	1161838..1162821	+	327	148260051	-	Acry_1043	-	TRAP transporter solute receptor TAXI family protein
1031	 70.94	0	1163022..1165598	+	858	148260052	-	Acry_1044	-	RND efflux transporter
1032	 76.81	+1	1165595..1165801	+	68	148260053	-	Acry_1045	-	hypothetical protein
1033	 68.82	0	1165863..1167716	+	617	148260054	-	Acry_1046	-	dihydroxy-acid dehydratase
1034	 71.76	0	1167951..1169168	-	405	148260055	-	Acry_1047	-	major facilitator transporter
1035	 65.54	0	1169370..1170080	-	236	148260056	-	Acry_1048	-	ABC transporter related
1036	 66.80	0	1170077..1170841	-	254	148260057	-	Acry_1049	-	ABC transporter related
1037	 66.67	0	1170838..1171824	-	328	148260058	-	Acry_1050	-	inner-membrane translocator
1038	 64.37	0	1171821..1172690	-	289	148260059	-	Acry_1051	-	inner-membrane translocator
1039	 65.47	0	1172812..1174065	-	417	148260060	-	Acry_1052	-	extracellular ligand-binding receptor
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.