IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
868	 70.79	0	970200..970466	+	88	148259889	-	Acry_0878	-	hypothetical protein
869	 48.65	-2	970564..971007	+	147	148259890	-	Acry_0879	-	hypothetical protein
870	 75.80	+1	971120..971896	+	258	148259891	-	Acry_0880	-	hypothetical protein
871	 64.33	0	971897..973954	-	685	148259892	-	Acry_0881	-	phosphoesterase
872	 63.16	0	974045..974443	-	132	148259893	-	Acry_0882	-	lytic transglycosylase, catalytic
873	 66.67	0	974524..974961	+	145	148259894	-	Acry_0883	-	general secretion pathway protein G
874	 77.32	+1	974969..975766	-	265	148259895	-	Acry_0884	-	hypothetical protein
875	 71.95	0	975769..978039	-	756	148259896	-	Acry_0885	-	general secretion pathway protein D
876	 76.64	+1	978063..978413	-	116	148259897	-	Acry_0886	-	hypothetical protein
877	 74.74	+1	978569..979150	-	193	148259898	-	Acry_0887	-	hypothetical protein
878	 75.02	+1	979155..980207	-	350	148259899	-	Acry_0888	-	fimbrial assembly family protein
879	 77.05	+1	980257..980853	-	198	148259900	-	Acry_0889	-	hypothetical protein
880	 76.42	+1	980850..981218	-	122	148259901	-	Acry_0890	-	hypothetical protein
881	 76.92	+1	981202..981669	-	155	148259902	-	Acry_0891	-	hypothetical protein
882	 73.87	+1	981653..982873	-	406	148259903	-	Acry_0892	-	type II secretion system protein
883	 73.78	+1	982886..984559	-	557	148259904	-	Acry_0893	-	type II secretion system protein E
884	 74.70	+1	984629..985387	+	252	148259905	-	Acry_0894	-	peptidase A24A domain-containing protein
885	 65.01	0	985507..988347	+	946	148259906	-	Acry_0895	-	hypothetical protein
886	 66.84	0	988630..990957	-	775	148259907	-	Acry_0896	-	TonB-dependent receptor
887	 57.21	-2	991181..991402	-	73	148259908	-	Acry_0897	-	hypothetical protein
888	 63.04	-1	991399..991977	-	192	148259909	-	Acry_0898	-	hypothetical protein
889	 68.65	0	992345..993907	-	520	148259910	guaA	Acry_0899	-	bifunctional GMP synthase/glutamine amidotransferase protein
890	 67.42	0	993980..994645	-	221	148259911	-	Acry_0900	-	carboxymethylenebutenolidase
891	 67.88	0	994648..995142	-	164	148259912	-	Acry_0901	-	NUDIX hydrolase
892	 70.12	0	995139..996122	-	327	148259913	-	Acry_0902	-	protein of unknown function DUF610, YibQ
893	 65.50	0	996109..997482	-	457	148259914	-	Acry_0903	-	carboxyl-terminal protease
894	 74.05	+1	997555..998733	-	392	148259915	-	Acry_0904	-	peptidase M23B
895	 69.63	0	998733..1000250	-	505	148259916	-	Acry_0905	-	phosphoglyceromutase
896	 66.93	0	1000347..1001120	+	257	148259917	-	Acry_0906	-	TatD family hydrolase
897	 69.03	0	1001117..1001920	+	267	148259918	-	Acry_0907	-	beta-lactamase domain-containing protein
898	 69.73	0	1001917..1003122	+	401	148259919	-	Acry_0908	-	peptidase M29, aminopeptidase II
899	 72.35	0	1003139..1004335	-	398	148259920	-	Acry_0909	-	threonine dehydratase
900	 65.19	0	1004340..1004813	-	157	148259921	-	Acry_0910	-	transcription elongation factor GreA
901	 68.48	0	1004895..1008140	-	1081	148259922	carB	Acry_0911	-	carbamoyl phosphate synthase large subunit
902	 68.53	0	1008143..1009486	-	447	148259923	-	Acry_0912	-	carbamoyl phosphate synthase small subunit
903	 74.03	+1	1009622..1012270	+	882	148259924	-	Acry_0913	-	DNA mismatch repair protein
904	 70.07	0	1012272..1015088	+	938	148259925	-	Acry_0914	-	PII uridylyl-transferase
905	 68.69	0	1015253..1017229	+	658	148259926	-	Acry_0915	-	outer membrane autotransporter
906	 67.80	0	1017496..1018818	+	440	148259927	tig	Acry_0916	-	trigger factor
907	 63.52	0	1018970..1019605	+	211	148259928	-	Acry_0917	-	ATP-dependent Clp protease, proteolytic subunit ClpP
908	 62.37	-1	1019750..1021006	+	418	148259929	clpX	Acry_0918	-	ATP-dependent protease ATP-binding subunit
909	 63.06	-1	1021142..1023583	+	813	148259930	-	Acry_0919	-	ATP-dependent protease La
910	 64.77	0	1023777..1024040	+	87	148259931	-	Acry_0920	-	histone family protein DNA-binding protein
911	 56.01	-2	1024776..1025141	+	121	148259932	-	Acry_0921	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
912	 63.81	0	1025217..1025777	+	186	148259933	-	Acry_0922	-	NADH dehydrogenase subunit B
913	 65.42	0	1025770..1026411	+	213	148259934	-	Acry_0923	-	NADH (or F420H2) dehydrogenase, subunit C
914	 61.59	-1	1026408..1027628	+	406	148259935	-	Acry_0924	-	NADH dehydrogenase subunit D
915	 67.48	0	1027632..1028243	+	203	148259936	-	Acry_0925	-	NADH-quinone oxidoreductase, E subunit
916	 65.28	0	1028245..1029540	+	431	148259937	-	Acry_0926	-	NADH dehydrogenase I subunit F
917	 67.44	0	1029608..1031668	+	686	148259938	-	Acry_0927	-	NADH dehydrogenase subunit G
918	 62.44	-1	1031674..1032690	+	338	148259939	-	Acry_0928	-	NADH dehydrogenase (quinone)
919	 62.80	-1	1032703..1033194	+	163	148259940	-	Acry_0929	-	NADH dehydrogenase subunit I
920	 63.90	0	1033201..1033851	+	216	148259941	-	Acry_0930	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
921	 61.22	-1	1033848..1034159	+	103	148259942	-	Acry_0931	-	NADH-ubiquinone oxidoreductase, chain 4L
922	 65.94	0	1034166..1036094	+	642	148259943	-	Acry_0932	-	proton-translocating NADH-quinone oxidoreductase, chain L
923	 64.62	0	1036108..1037625	+	505	148259944	-	Acry_0933	-	proton-translocating NADH-quinone oxidoreductase, chain M
924	 64.72	0	1037634..1039070	+	478	148259945	-	Acry_0934	-	proton-translocating NADH-quinone oxidoreductase, chain N
925	 72.15	0	1039067..1039795	+	242	148259946	-	Acry_0935	-	biotin--acetyl-CoA-carboxylase ligase
926	 67.67	0	1039817..1040617	+	266	148259947	-	Acry_0936	-	pantothenate kinase
927	 68.43	0	1040652..1042298	+	548	148259948	-	Acry_0937	-	beta-lactamase domain-containing protein
928	 66.21	0	1042550..1043644	+	364	148259949	-	Acry_0938	-	acyltransferase 3
929	 66.21	0	1043678..1044991	+	437	148259950	-	Acry_0939	-	prolyl-tRNA synthetase
930	 64.66	0	1044991..1046238	+	415	148259951	-	Acry_0940	-	LolC/E family lipoprotein releasing system, transmembrane protein
931	 65.34	0	1046231..1046908	+	225	148259952	-	Acry_0941	-	ABC transporter related
932	 68.80	0	1046931..1047869	+	312	148259953	-	Acry_0942	-	alpha/beta hydrolase domain-containing protein
933	 62.21	-1	1047859..1048329	+	156	148259954	-	Acry_0943	-	hypothetical protein
934	 69.77	0	1048289..1050094	-	601	148259955	-	Acry_0944	-	ABC transporter related
935	 69.03	0	1050162..1051766	+	534	148259956	-	Acry_0945	-	FAD dependent oxidoreductase
936	 68.09	0	1051867..1052637	-	256	148259957	-	Acry_0946	-	exodeoxyribonuclease III Xth
937	 71.13	0	1053066..1054208	+	380	148259958	-	Acry_0948	-	putative deoxyguanosinetriphosphate triphosphohydrolase
938	 69.85	0	1054218..1056008	+	596	148259959	-	Acry_0949	-	arginyl-tRNA synthetase
939	 73.61	+1	1056034..1056912	+	292	148259960	-	Acry_0950	-	sporulation domain-containing protein
940	 73.68	+1	1056923..1057849	+	308	148259961	-	Acry_0951	-	Beta-N-acetylhexosaminidase
941	 67.39	0	1057846..1058541	+	231	148259962	-	Acry_0952	-	peptidase M50
942	 71.82	0	1058528..1059322	+	264	148259963	-	Acry_0953	-	chromosome segregation and condensation protein ScpA
943	 71.15	0	1059315..1059872	+	185	148259964	-	Acry_0954	-	putative transcriptional regulator
944	 66.42	0	1059960..1060364	+	134	148259965	-	Acry_0955	-	hypothetical protein
945	 60.97	-1	1060374..1061180	+	268	148259966	-	Acry_0956	-	Sec-independent protein translocase, TatC subunit
946	 68.36	0	1061173..1062474	+	433	148259967	-	Acry_0957	-	seryl-tRNA synthetase
947	 65.29	0	1062557..1063426	+	289	148259968	-	Acry_0958	-	beta-lactamase domain-containing protein
948	 72.15	0	1063445..1063882	+	145	148259969	-	Acry_0959	-	protein of unknown function DUF395, YeeE/YedE
949	 73.12	0	1063882..1064346	+	154	148259970	-	Acry_0960	-	protein of unknown function DUF395, YeeE/YedE
950	 64.95	0	1064295..1064702	-	135	148259971	-	Acry_0961	-	regulatory protein, ArsR
951	 68.62	0	1064853..1065620	-	255	148259972	-	Acry_0962	-	thiazole biosynthesis family protein
952	 69.08	0	1065622..1065828	-	68	148259973	-	Acry_0963	-	thiamine biosynthesis protein ThiS
953	 72.01	0	1065825..1066946	-	373	148259974	-	Acry_0964	-	glycine oxidase ThiO
954	 67.16	0	1066951..1068771	-	606	148259975	-	Acry_0965	-	thiamine biosynthesis protein ThiC
955	 66.30	0	1069191..1071074	+	627	148259976	-	Acry_0966	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
956	 69.23	0	1071149..1071811	+	220	148259977	-	Acry_0967	-	DSBA oxidoreductase
957	 68.44	0	1071854..1072813	+	319	148259978	-	Acry_0968	-	lytic murein transglycosylase
958	 75.45	+1	1072810..1073697	+	295	148259979	-	Acry_0969	-	rare lipoprotein A
959	 72.99	0	1073694..1074326	+	210	148259980	-	Acry_0970	-	dTMP kinase
960	 74.10	+1	1074326..1075294	+	322	148259981	-	Acry_0971	-	DNA polymerase III subunit delta'
961	 65.43	0	1075291..1076826	+	511	148259982	-	Acry_0972	-	methionyl-tRNA synthetase
962	 65.68	0	1076896..1077909	-	337	148259983	fliM	Acry_0973	-	flagellar motor switch protein FliM
963	 73.37	+1	1078066..1079571	+	501	148259984	-	Acry_0974	-	hypothetical protein
964	 72.99	0	1079578..1080210	-	210	148259985	-	Acry_0975	-	hypothetical protein
965	 70.40	0	1080207..1080983	-	258	148259986	-	Acry_0976	-	glycosyl transferase family protein
966	 68.68	0	1081211..1082305	-	364	148259987	-	Acry_0977	-	triple helix repeat-containing collagen
967	 69.77	0	1082634..1083566	+	310	148259988	-	Acry_0978	-	MarR family transcriptional regulator
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.