IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
794	 61.25	-1	893061..893411	-	116	148259815	-	Acry_0804	-	hypothetical protein
795	 62.25	-1	893412..894635	+	407	148259816	-	Acry_0805	-	transposase, mutator type
796	 62.81	-1	894639..895442	-	267	148259817	-	Acry_0806	-	hypothetical protein
797	 66.38	0	895655..896686	+	343	148259818	-	Acry_0807	-	transposase IS116/IS110/IS902 family protein
798	 51.85	-2	897092..897928	-	278	148259819	-	Acry_0808	-	hypothetical protein
799	 60.44	-1	897955..898227	-	90	148259820	-	Acry_0809	-	hypothetical protein
800	 45.57	-2	898450..901809	-	1119	148259821	-	Acry_0810	-	hypothetical protein
801	 45.00	-2	901806..903236	-	476	148259822	-	Acry_0811	-	phage integrase family protein
802	 69.73	0	903410..903670	-	86	148259823	-	Acry_0812	-	hypothetical protein
803	 70.76	0	903673..904332	-	219	148259824	-	Acry_0813	-	glutathione S-transferase domain-containing protein
804	 71.12	0	904342..905352	-	336	148259825	-	Acry_0814	-	alpha/beta hydrolase domain-containing protein
805	 73.33	+1	905429..905668	+	79	148259826	-	Acry_0815	-	hypothetical protein
806	 75.51	+1	905717..906553	+	278	148259827	-	Acry_0816	-	dihydropteroate synthase
807	 72.28	0	906629..907999	+	456	148259828	-	Acry_0817	-	phosphoglucosamine mutase
808	 75.21	+1	908008..908826	+	272	148259829	-	Acry_0818	-	phosphomethylpyrimidine kinase
809	 65.25	0	908866..909288	+	140	148259830	-	Acry_0819	-	OsmC family protein
810	 68.40	0	909425..910636	+	403	148259831	-	Acry_0820	-	response regulator receiver protein
811	 69.48	0	910889..911956	+	355	148259832	-	Acry_0821	-	inositol phosphatase/fructose-1,6-bisphosphatase
812	 62.90	-1	911953..912828	+	291	148259833	-	Acry_0822	-	phosphoribulokinase
813	 67.22	0	912877..913956	+	359	148259834	-	Acry_0823	-	fructose-bisphosphate aldolase, class II
814	 65.05	0	913983..915464	+	493	148259835	rbcL	Acry_0824	-	ribulose bisophosphate carboxylase
815	 61.07	-1	915477..915905	+	142	148259836	-	Acry_0825	-	ribulose-bisphosphate carboxylase
816	 65.69	0	915917..916837	+	306	148259837	-	Acry_0826	-	ATPase central domain-containing protein
817	 70.21	0	916824..917501	+	225	148259838	-	Acry_0827	-	ribulose-phosphate 3-epimerase
818	 68.85	0	917514..918797	-	427	148259839	-	Acry_0828	-	cytosine deaminase
819	 66.20	0	918794..919432	-	212	148259840	-	Acry_0829	-	pyridoxamine 5'-phosphate oxidase
820	 67.62	0	919484..920320	+	278	148259841	-	Acry_0830	-	short-chain dehydrogenase/reductase SDR
821	 67.49	0	920367..920609	-	80	148259842	-	Acry_0831	-	hypothetical protein
822	 73.20	+1	920606..921370	-	254	148259843	-	Acry_0832	-	binding-protein-dependent transport systems inner membrane component
823	 73.68	+1	921367..922107	-	246	148259844	-	Acry_0833	-	ABC transporter related
824	 63.80	0	922109..923119	-	336	148259845	-	Acry_0834	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
825	 71.73	0	923192..923527	+	111	148259846	-	Acry_0835	-	hypothetical protein
826	 65.09	0	923585..924409	-	274	148259847	-	Acry_0836	-	formate/nitrite transporter
827	 67.10	0	924651..924881	-	76	148259848	-	Acry_0837	-	hypothetical protein
828	 69.81	0	924871..925698	-	275	148259849	-	Acry_0838	-	formate dehydrogenase family accessory protein FdhD
829	 67.05	0	925695..928535	-	946	148259850	-	Acry_0839	-	formate dehydrogenase, alpha subunit
830	 68.73	0	928548..930098	-	516	148259851	-	Acry_0840	-	NADH dehydrogenase (quinone)
831	 70.25	0	930098..930571	-	157	148259852	-	Acry_0841	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
832	 69.44	0	930712..931611	-	299	148259853	-	Acry_0842	-	LysR family transcriptional regulator
833	 70.48	0	931608..932681	-	357	148259854	-	Acry_0843	-	alcohol dehydrogenase
834	 73.74	+1	932765..934078	-	437	148259855	-	Acry_0844	-	FolC bifunctional protein
835	 69.31	0	934075..934944	-	289	148259856	-	Acry_0845	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
836	 71.16	0	934955..935488	-	177	148259857	-	Acry_0846	-	hypothetical protein
837	 72.87	0	935511..936251	-	246	148259858	-	Acry_0847	-	peptidase C26
838	 72.02	0	936273..937487	-	404	148259859	-	Acry_0848	-	Bcr/CflA subfamily drug resistance transporter
839	 70.77	0	937607..937996	-	129	148259860	-	Acry_0849	-	hypothetical protein
840	 68.44	0	937993..938892	-	299	148259861	-	Acry_0850	-	branched-chain amino acid aminotransferase
841	 71.10	0	939100..939618	+	172	148259862	-	Acry_0851	-	MarR family transcriptional regulator
842	 74.57	+1	939615..940310	+	231	148259863	-	Acry_0852	-	two component transcriptional regulator
843	 71.95	0	940307..941632	+	441	148259864	-	Acry_0853	-	integral membrane sensor signal transduction histidine kinase
844	 72.73	0	941866..943350	+	494	148259865	-	Acry_0854	-	glycosyl transferase, group 1
845	 78.39	+2	943307..944014	-	235	148259866	-	Acry_0855	-	hypothetical protein
846	 70.50	0	944300..945811	+	503	148259867	-	Acry_0856	-	DEAD/DEAH box helicase domain-containing protein
847	 66.01	0	945808..947034	+	408	148259868	-	Acry_0857	-	acyl-CoA dehydrogenase domain-containing protein
848	 67.99	0	947091..947924	-	277	148259869	-	Acry_0858	-	hypothetical protein
849	 67.86	0	948009..950438	+	809	148259870	-	Acry_0859	-	diguanylate cyclase/phosphodiesterase
850	 73.46	+1	950490..950960	+	156	148259871	-	Acry_0860	-	GatB/Yqey domain-containing protein
851	 73.99	+1	950957..952786	+	609	148259872	-	Acry_0861	-	DNA primase
852	 66.04	0	952829..954745	+	638	148259873	-	Acry_0862	-	RNA polymerase sigma factor RpoD
853	 71.17	0	954755..955354	+	199	148259874	-	Acry_0863	-	GCN5-related N-acetyltransferase
854	 75.85	+1	955392..956066	+	224	148259875	-	Acry_0864	-	pseudouridine synthase
855	 69.87	0	956019..957392	-	457	148259876	-	Acry_0865	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
856	 75.81	+1	957395..958105	-	236	148259877	-	Acry_0866	-	HAD family hydrolase
857	 70.22	0	958169..959686	-	505	148259878	-	Acry_0867	-	glycosyl transferase family protein
858	 72.64	0	960451..960885	+	144	148259879	-	Acry_0868	-	hypothetical protein
859	 68.70	0	961321..962010	-	229	148259880	-	Acry_0869	-	electron transport protein SCO1/SenC
860	 66.33	0	962007..963470	-	487	148259881	gatB	Acry_0870	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
861	 69.57	0	963467..964948	-	493	148259882	gatA	Acry_0871	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
862	 66.32	0	964945..965232	-	95	148259883	-	Acry_0872	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
863	 71.07	0	965279..965755	+	158	148259884	-	Acry_0873	-	Holliday junction resolvase YqgF
864	 69.95	0	965950..966864	+	304	148259885	-	Acry_0874	-	hypothetical protein
865	 70.76	0	966965..967501	+	178	148259886	-	Acry_0875	-	glycoside hydrolase family protein
866	 53.33	-2	967693..968277	+	194	148259887	-	Acry_0876	-	hypothetical protein
867	 48.99	-2	968938..969480	+	180	148259888	-	Acry_0877	-	hypothetical protein
868	 70.79	0	970200..970466	+	88	148259889	-	Acry_0878	-	hypothetical protein
869	 48.65	-2	970564..971007	+	147	148259890	-	Acry_0879	-	hypothetical protein
870	 75.80	+1	971120..971896	+	258	148259891	-	Acry_0880	-	hypothetical protein
871	 64.33	0	971897..973954	-	685	148259892	-	Acry_0881	-	phosphoesterase
872	 63.16	0	974045..974443	-	132	148259893	-	Acry_0882	-	lytic transglycosylase, catalytic
873	 66.67	0	974524..974961	+	145	148259894	-	Acry_0883	-	general secretion pathway protein G
874	 77.32	+1	974969..975766	-	265	148259895	-	Acry_0884	-	hypothetical protein
875	 71.95	0	975769..978039	-	756	148259896	-	Acry_0885	-	general secretion pathway protein D
876	 76.64	+1	978063..978413	-	116	148259897	-	Acry_0886	-	hypothetical protein
877	 74.74	+1	978569..979150	-	193	148259898	-	Acry_0887	-	hypothetical protein
878	 75.02	+1	979155..980207	-	350	148259899	-	Acry_0888	-	fimbrial assembly family protein
879	 77.05	+1	980257..980853	-	198	148259900	-	Acry_0889	-	hypothetical protein
880	 76.42	+1	980850..981218	-	122	148259901	-	Acry_0890	-	hypothetical protein
881	 76.92	+1	981202..981669	-	155	148259902	-	Acry_0891	-	hypothetical protein
882	 73.87	+1	981653..982873	-	406	148259903	-	Acry_0892	-	type II secretion system protein
883	 73.78	+1	982886..984559	-	557	148259904	-	Acry_0893	-	type II secretion system protein E
884	 74.70	+1	984629..985387	+	252	148259905	-	Acry_0894	-	peptidase A24A domain-containing protein
885	 65.01	0	985507..988347	+	946	148259906	-	Acry_0895	-	hypothetical protein
886	 66.84	0	988630..990957	-	775	148259907	-	Acry_0896	-	TonB-dependent receptor
887	 57.21	-2	991181..991402	-	73	148259908	-	Acry_0897	-	hypothetical protein
888	 63.04	-1	991399..991977	-	192	148259909	-	Acry_0898	-	hypothetical protein
889	 68.65	0	992345..993907	-	520	148259910	guaA	Acry_0899	-	bifunctional GMP synthase/glutamine amidotransferase protein
890	 67.42	0	993980..994645	-	221	148259911	-	Acry_0900	-	carboxymethylenebutenolidase
891	 67.88	0	994648..995142	-	164	148259912	-	Acry_0901	-	NUDIX hydrolase
892	 70.12	0	995139..996122	-	327	148259913	-	Acry_0902	-	protein of unknown function DUF610, YibQ
893	 65.50	0	996109..997482	-	457	148259914	-	Acry_0903	-	carboxyl-terminal protease
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.