IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
30	 71.36	0	28312..28950	-	212	148259051	-	Acry_0030	-	cytidylate kinase
31	 71.97	0	28947..30284	-	445	148259052	-	Acry_0031	-	3-phosphoshikimate 1-carboxyvinyltransferase
32	 61.42	-1	30423..30746	+	107	148259053	-	Acry_0032	-	hypothetical protein
33	 67.86	0	30796..31047	-	83	148259054	-	Acry_0033	-	hypothetical protein
34	 65.04	0	31136..32365	+	409	148259055	-	Acry_0034	-	L-carnitine dehydratase/bile acid-inducible protein F
35	 69.76	0	32380..33219	+	279	148259056	-	Acry_0035	-	hypothetical protein
36	 65.73	0	33219..34070	+	283	148259057	-	Acry_0036	-	putative ribonuclease BN
37	 71.31	0	34256..36493	+	745	148259058	-	Acry_0037	-	ribonuclease R
38	 70.59	0	36490..38094	+	534	148259059	-	Acry_0038	-	C-terminal processing peptidase
39	 54.17	-2	38140..38307	+	55	148259060	-	Acry_0039	-	ribosomal protein L33
40	 70.09	0	38471..39610	-	379	148259061	-	Acry_0040	-	lipid-A-disaccharide synthase
41	 69.98	0	39607..40482	-	291	148259062	-	Acry_0041	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
42	 70.31	0	40479..41000	-	173	148259063	-	Acry_0042	-	hypothetical protein
43	 66.09	0	41089..42816	-	575	148259064	-	Acry_0043	-	gluconate 2-dehydrogenase (acceptor)
44	 64.87	0	43357..44583	-	408	148259065	-	Acry_0044	-	5-aminolevulinate synthase
45	 65.38	0	44723..45655	-	310	148259066	thyX	Acry_0045	-	FAD-dependent thymidylate synthase
46	 66.89	0	46354..46794	-	146	148259067	-	Acry_0046	-	hypothetical protein
47	 70.95	0	46791..47420	-	209	148259068	-	Acry_0047	-	cobyrinic acid a,c-diamide synthase
48	 71.86	0	47474..48880	+	468	148259069	-	Acry_0048	-	carbohydrate kinase, YjeF related protein
49	 69.66	0	49470..50570	+	366	148259070	-	Acry_0049	-	glycine cleavage system T protein
50	 67.20	0	50582..50956	+	124	148259071	-	Acry_0050	-	glycine cleavage system H protein
51	 69.72	0	50971..53853	+	960	148259072	-	Acry_0051	-	glycine dehydrogenase
52	 63.72	0	53949..54524	+	191	148259073	-	Acry_0052	-	Lipocalin family protein
53	 70.97	0	54608..56350	+	580	148259074	-	Acry_0053	-	acid phosphatase
54	 68.20	0	56586..57107	+	173	148259075	-	Acry_0054	-	cell division protein MraZ
55	 70.81	0	57104..58045	+	313	148259076	-	Acry_0055	-	S-adenosyl-methyltransferase MraW
56	 74.37	+1	58042..58911	+	289	148259077	-	Acry_0056	-	secreted (periplasmic) protein-like protein
57	 67.77	0	58908..60998	+	696	148259078	-	Acry_0057	-	peptidoglycan glycosyltransferase
58	 70.95	0	61003..62448	+	481	148259079	murE	Acry_0058	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
59	 69.17	0	62445..63800	+	451	148259080	-	Acry_0059	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
60	 62.63	-1	63800..64888	+	362	148259081	-	Acry_0060	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
61	 66.45	0	64885..66270	+	461	148259082	-	Acry_0061	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
62	 64.26	0	66270..67433	+	387	148259083	-	Acry_0062	-	cell cycle protein
63	 71.82	0	67430..68536	+	368	148259084	murG	Acry_0063	-	N-acetylglucosaminyl transferase
64	 67.85	0	68533..69972	+	479	148259085	murC	Acry_0064	-	UDP-N-acetylmuramate--L-alanine ligase
65	 73.01	0	69969..70898	+	309	148259086	-	Acry_0065	-	UDP-N-acetylenolpyruvoylglucosamine reductase
66	 67.77	0	70895..71800	+	301	148259087	-	Acry_0066	-	D-alanine--D-alanine ligase
67	 69.28	0	71788..72666	+	292	148259088	-	Acry_0067	-	polypeptide-transport-associated domain-containing protein
68	 68.80	0	72674..73987	+	437	148259089	-	Acry_0068	-	cell division protein FtsA
69	 68.26	0	74052..75620	+	522	148259090	-	Acry_0069	-	cell division protein FtsZ
70	 68.23	0	75755..76138	+	127	148259091	-	Acry_0070	-	hypothetical protein
71	 70.44	0	76201..78294	+	697	148259092	-	Acry_0071	-	ComEC/Rec2-related protein
72	 69.01	0	78221..79246	-	341	148259093	-	Acry_0072	-	glycosyl transferase family protein
73	 68.48	0	79236..80720	-	494	148259094	-	Acry_0073	-	sugar transferase
74	 66.21	0	80774..81214	-	146	148259095	-	Acry_0074	-	GtrA family protein
75	 63.86	0	81403..81900	+	165	148259096	-	Acry_0075	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
76	 64.21	0	81966..84371	+	801	148259097	-	Acry_0076	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
77	 64.78	0	84384..85178	+	264	148259098	-	Acry_0077	-	carbon-monoxide dehydrogenase (acceptor)
78	 63.74	0	85538..86461	+	307	148259099	-	Acry_0078	-	pyrroloquinoline quinone biosynthesis protein PqqB
79	 64.91	0	86458..87198	+	246	148259100	-	Acry_0079	-	pyrroloquinoline quinone biosynthesis protein PqqC
80	 61.96	-1	87195..87470	+	91	148259101	-	Acry_0080	-	coenzyme PQQ synthesis D
81	 63.73	0	87467..88588	+	373	148259102	-	Acry_0081	-	pyrroloquinoline quinone biosynthesis protein PqqE
82	 67.15	0	88570..89400	-	276	148259103	-	Acry_0082	-	RNA methyltransferase
83	 62.39	-1	89808..90368	+	186	148259104	-	Acry_0083	-	hypothetical protein
84	 67.07	0	90445..93444	-	999	148259105	-	Acry_0084	-	hypothetical protein
85	 65.52	0	93545..94156	-	203	148259106	-	Acry_0085	-	nicotinamidase
86	 63.35	0	94285..95037	+	250	148259107	-	Acry_0086	-	short-chain dehydrogenase/reductase SDR
87	 64.20	0	95049..96830	+	593	148259108	-	Acry_0087	-	dihydroxy-acid dehydratase
88	 64.78	0	96885..97679	-	264	148259109	-	Acry_0088	-	hypothetical protein
89	 62.80	-1	97812..98225	-	137	148259110	-	Acry_0089	-	MerR family transcriptional regulator
90	 61.80	-1	98250..101312	-	1020	148259111	-	Acry_0090	-	acriflavin resistance protein
91	 61.27	-1	101322..102506	-	394	148259112	-	Acry_0091	-	RND family efflux transporter MFP subunit
92	 62.90	-1	102503..104176	-	557	148259113	-	Acry_0092	-	RND efflux system outer membrane lipoprotein
93	 62.90	-1	104218..104907	+	229	148259114	-	Acry_0093	-	TetR family transcriptional regulator
94	 64.71	0	104863..105732	-	289	148259115	-	Acry_0094	-	PaaX family transcriptional regulator
95	 61.90	-1	105939..106820	-	293	148259116	-	Acry_0095	-	transposase, IS4 family protein
96	 63.71	0	107093..107329	-	78	148259117	-	Acry_0096	-	hypothetical protein
97	 64.42	0	107462..108439	-	325	148259118	-	Acry_0097	-	transposase, IS4 family protein
98	 63.12	-1	108572..108994	+	140	148259119	-	Acry_0098	-	transposase
99	 58.91	-1	109937..110284	+	115	148259120	-	Acry_0100	-	hypothetical protein
100	 55.04	-2	110302..110688	+	128	148259121	-	Acry_0101	-	transposase, IS4 family protein
101	 59.62	-1	110707..111912	-	401	148259122	-	Acry_0102	-	aminotransferase, class I and II
102	 52.50	-2	111944..114145	-	733	148259123	-	Acry_0103	-	TPR repeat-containing protein
103	 55.18	-2	114138..114929	-	263	148259124	-	Acry_0104	-	TPR repeat-containing protein
104	 46.62	-2	114995..115867	-	290	148259125	-	Acry_0105	-	hypothetical protein
105	 54.17	-2	115953..116216	+	87	148259126	-	Acry_0106	-	hypothetical protein
106	 55.89	-2	116241..116639	-	132	148259127	-	Acry_0107	-	flagellar biosynthesis regulator FlbT-like protein
107	 52.88	-2	116711..117595	-	294	148259128	-	Acry_0108	-	flagellin domain-containing protein
108	 54.39	-2	118749..120206	-	485	148259129	-	Acry_0109	-	flagellar hook-associated protein FlgK
109	 56.49	-2	120249..121526	-	425	148259130	flgE	Acry_0110	-	flagellar hook protein FlgE
110	 63.38	0	121659..122114	-	151	148259131	-	Acry_0111	-	hypothetical protein
111	 64.33	0	122185..123468	+	427	148259132	-	Acry_0112	-	hypothetical protein
112	 61.15	-1	123517..124278	+	253	148259133	-	Acry_0113	-	flagellar hook capping protein
113	 55.79	-2	124372..125823	-	483	148259134	-	Acry_0114	-	hypothetical protein
114	 66.51	0	126107..127360	-	417	148259135	-	Acry_0115	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
115	 65.25	0	127815..129011	+	398	148259136	-	Acry_0116	-	ROK family protein
116	 67.64	0	129367..130599	-	410	148259137	-	Acry_0117	-	amine oxidase
117	 69.07	0	130596..131468	-	290	148259138	-	Acry_0118	-	squalene/phytoene synthase
118	 66.67	0	131468..132304	-	278	148259139	-	Acry_0119	-	squalene/phytoene synthase
119	 68.17	0	132301..133428	-	375	148259140	-	Acry_0120	-	glycosyl transferase family protein
120	 66.21	0	133425..134510	-	361	148259141	-	Acry_0121	-	NAD-dependent epimerase/dehydratase
121	 66.95	0	134658..135707	+	349	148259142	-	Acry_0122	-	hypothetical protein
122	 59.61	-1	135777..136031	+	84	148259143	-	Acry_0123	-	transglycosylase-associated protein
123	 66.58	0	136075..137256	+	393	148259144	-	Acry_0124	-	acyltransferase 3
124	 70.89	0	137216..138400	-	394	148259145	-	Acry_0125	-	HemY domain-containing protein
125	 69.71	0	138400..139353	-	317	148259146	-	Acry_0126	-	hypothetical protein
126	 70.87	0	139350..140063	-	237	148259147	-	Acry_0127	-	uroporphyrinogen III synthase HEM4
127	 68.76	0	140056..141057	-	333	148259148	-	Acry_0128	-	porphobilinogen deaminase
128	 70.79	0	141081..142172	+	363	148259149	-	Acry_0129	-	metalloendopeptidase glycoprotease family
129	 65.36	0	142327..144843	+	838	148259150	-	Acry_0130	-	glycogen/starch/alpha-glucan phosphorylase
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.