IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
672	 76.04	+1	766845..767399	+	184	148259693	-	Acry_0680	-	hypothetical protein
673	 70.06	0	767465..768910	+	481	148259694	-	Acry_0681	-	methyl-accepting chemotaxis sensory transducer
674	 71.09	0	768963..769640	+	225	148259695	aat	Acry_0682	-	leucyl/phenylalanyl-tRNA--protein transferase
675	 64.64	0	769821..770660	+	279	148259696	-	Acry_0683	-	extracellular solute-binding protein
676	 66.27	0	770738..771490	+	250	148259697	-	Acry_0684	-	polar amino acid ABC transporter, inner membrane subunit
677	 68.23	0	771487..772254	+	255	148259698	-	Acry_0685	-	ABC transporter related
678	 72.74	0	772259..773296	-	345	148259699	-	Acry_0686	-	ribokinase-like domain-containing protein
679	 68.39	0	773304..774290	-	328	148259700	-	Acry_0687	-	hypothetical protein
680	 70.83	0	774696..775199	-	167	148259701	-	Acry_0688	-	hypothetical protein
681	 64.55	0	775370..775699	+	109	148259702	-	Acry_0689	-	hypothetical protein
682	 71.18	0	775828..776757	+	309	148259703	-	Acry_0690	-	substrate-binding region of ABC-type glycine betaine transport system
683	 75.02	+1	776809..777921	-	370	148259704	-	Acry_0691	-	hypothetical protein
684	 64.65	0	778081..778278	-	65	148259705	-	Acry_0692	-	hypothetical protein
685	 46.59	-2	778414..778956	-	180	148259706	-	Acry_0693	-	hypothetical protein
686	 52.96	-2	779014..779334	+	106	148259707	-	Acry_0694	-	hypothetical protein
687	 66.67	0	779788..780099	-	103	148259708	-	Acry_0695	-	ETC complex I subunit region
688	 63.99	0	780247..780732	-	161	148259709	-	Acry_0696	-	hypothetical protein
689	 74.39	+1	780752..781825	-	357	148259710	-	Acry_0697	-	histone deacetylase superfamily protein
690	 68.06	0	781892..783472	+	526	148259711	-	Acry_0698	-	peptide chain release factor 3
691	 49.40	-2	783694..784440	+	248	148259712	-	Acry_0699	-	RecB family-like nuclease
692	 49.60	-2	784498..784749	-	83	148259713	-	Acry_0700	-	hypothetical protein
693	 50.84	-2	784756..785052	+	98	148259714	-	Acry_0701	-	hypothetical protein
694	 61.39	-1	785167..785583	-	138	148259715	-	Acry_0702	-	hypothetical protein
695	 61.26	-1	785696..786157	+	153	148259716	-	Acry_0703	-	hypothetical protein
696	 64.32	0	786201..787562	-	453	148259717	-	Acry_0704	-	transposase, IS4 family protein
697	 58.70	-1	787525..787863	-	112	148259718	-	Acry_0705	-	hypothetical protein
698	 77.32	+1	788078..788884	+	268	148259719	-	Acry_0706	-	hypothetical protein
699	 66.73	0	788881..790440	+	519	148259720	lysK	Acry_0707	-	lysyl-tRNA synthetase
700	 65.25	0	790955..792652	+	565	148259721	-	Acry_0708	-	potassium-transporting ATPase, A subunit
701	 68.29	0	792664..794700	+	678	148259722	-	Acry_0709	-	K+-transporting ATPase, B subunit
702	 69.33	0	794716..795315	+	199	148259723	-	Acry_0710	-	potassium-transporting ATPase, C subunit
703	 36.93	-2	795332..795832	+	166	148259724	-	Acry_0711	-	hypothetical protein
704	 62.59	-1	795883..796176	+	97	148259725	-	Acry_0712	-	hypothetical protein
705	 72.50	0	796432..799035	+	867	148259726	-	Acry_0713	-	osmosensitive K+ channel signal transduction histidine kinase
706	 67.67	0	799032..799727	+	231	148259727	-	Acry_0714	-	two component transcriptional regulator
707	 67.81	0	799712..800677	-	321	148259728	-	Acry_0715	-	LysR family transcriptional regulator
708	 68.27	0	800721..801470	+	249	148259729	-	Acry_0716	-	short-chain dehydrogenase/reductase SDR
709	 67.34	0	801500..802396	+	298	148259730	-	Acry_0717	-	transketolase domain-containing protein
710	 68.76	0	802396..803400	+	334	148259731	-	Acry_0718	-	transketolase, central region
711	 63.52	0	803452..804468	+	338	148259732	-	Acry_0719	-	TRAP dicarboxylate transporter, DctP subunit
712	 68.30	0	804590..806431	+	613	148259733	-	Acry_0720	-	TRAP C4-dicarboxylate transport system permease DctM subunit
713	 68.40	0	806441..807190	-	249	148259734	-	Acry_0721	-	hypothetical protein
714	 72.11	0	807187..808362	-	391	148259735	-	Acry_0722	-	major facilitator transporter
715	 70.79	0	808362..809210	-	282	148259736	-	Acry_0723	-	undecaprenyl pyrophosphate phosphatase
716	 66.00	0	809487..810530	+	347	148259737	-	Acry_0724	-	glycosyl transferase family protein
717	 68.72	0	810525..810962	-	145	148259738	-	Acry_0725	-	Fe-S metabolism associated SufE
718	 68.98	0	810959..812212	-	417	148259739	-	Acry_0726	-	tyrosyl-tRNA synthetase
719	 72.65	0	812256..813575	-	439	148259740	-	Acry_0727	-	hypothetical protein
720	 74.74	+1	813596..814672	+	358	148259741	anmK	Acry_0728	-	anhydro-N-acetylmuramic acid kinase
721	 69.66	0	814685..817360	-	891	148259742	-	Acry_0729	-	DNA topoisomerase I
722	 75.04	+1	817379..818500	-	373	148259743	-	Acry_0730	-	DNA protecting protein DprA
723	 75.06	+1	819072..820358	-	428	148259744	-	Acry_0732	-	dihydroorotase, multifunctional complex type
724	 69.76	0	820351..821286	-	311	148259745	pyrB	Acry_0733	-	aspartate carbamoyltransferase catalytic subunit
725	 72.32	0	821332..822003	-	223	148259746	-	Acry_0734	-	putative phage repressor
726	 66.67	0	822257..822487	+	76	148259747	-	Acry_0735	-	hypothetical protein
727	 69.04	0	822568..823368	+	266	148259748	-	Acry_0736	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
728	 67.57	0	823379..824602	-	407	148259749	-	Acry_0737	-	hypothetical protein
729	 60.87	-1	825168..826184	-	338	148259750	nrdF	Acry_0738	-	ribonucleotide-diphosphate reductase subunit beta
730	 64.07	0	826227..828113	-	628	148259751	-	Acry_0739	-	ribonucleotide-diphosphate reductase subunit alpha
731	 66.17	0	828392..829594	-	400	148259752	-	Acry_0740	-	aminotransferase, class I and II
732	 63.95	0	829992..830873	+	293	148259753	-	Acry_0741	-	ABC-2 type transporter
733	 66.67	0	830877..831686	+	269	148259754	-	Acry_0742	-	ABC transporter related
734	 74.96	+1	831744..834047	-	767	148259755	-	Acry_0743	-	hypothetical protein
735	 73.96	+1	834047..835363	-	438	148259756	-	Acry_0744	-	diaminopimelate decarboxylase
736	 69.49	0	835485..836900	-	471	148259757	-	Acry_0745	-	argininosuccinate lyase
737	 68.16	0	836929..837531	+	200	148259758	-	Acry_0746	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
738	 66.99	0	837607..838836	+	409	148259759	-	Acry_0747	-	argininosuccinate synthase
739	 73.08	0	838849..839238	+	129	148259760	-	Acry_0748	-	TonB family protein
740	 70.29	0	839313..839837	+	174	148259761	-	Acry_0749	-	hypothetical protein
741	 70.13	0	839943..841298	-	451	148259762	engA	Acry_0750	-	GTP-binding protein EngA
742	 71.59	0	841295..842656	-	453	148259763	-	Acry_0751	-	Pyrrolo-quinoline quinone
743	 70.70	0	842653..843396	-	247	148259764	-	Acry_0752	-	hypothetical protein
744	 63.75	0	843413..843823	+	136	148259765	-	Acry_0753	-	hypothetical protein
745	 66.09	0	843981..845708	-	575	148259766	rpsA	Acry_0754	-	30S ribosomal protein S1
746	 66.56	0	845988..846935	+	315	148259767	-	Acry_0755	-	DNA uptake lipoprotein-like protein
747	 73.87	+1	846955..848634	+	559	148259768	-	Acry_0756	-	DNA repair protein RecN
748	 70.72	0	848631..850679	+	682	148259769	-	Acry_0757	-	DNA ligase, NAD-dependent
749	 62.11	-1	850719..851135	-	138	148259770	-	Acry_0758	-	TraR/DksA family transcriptional regulator
750	 73.18	0	851257..851655	-	132	148259771	-	Acry_0759	-	hypothetical protein
751	 63.38	0	851762..852916	+	384	148259772	flgI	Acry_0760	-	flagellar basal body P-ring protein
752	 68.12	0	852913..853326	+	137	148259773	-	Acry_0761	-	hypothetical protein
753	 70.83	0	853323..853730	+	135	148259774	-	Acry_0762	-	hypothetical protein
754	 69.72	0	853782..854795	+	337	148259775	-	Acry_0763	-	glycosyl transferase, group 1
755	 67.72	0	854832..856538	-	568	148259776	-	Acry_0764	-	PAS/PAC sensor hybrid histidine kinase
756	 64.30	0	856755..857387	-	210	148259777	-	Acry_0765	-	hypothetical protein
757	 70.61	0	857384..859309	-	641	148259778	-	Acry_0766	-	peptidase S9 prolyl oligopeptidase
758	 71.84	0	859465..860256	-	263	148259779	-	Acry_0767	-	hypothetical protein
759	 74.50	+1	860253..860852	-	199	148259780	-	Acry_0768	-	ABC transporter related
760	 70.29	0	860857..862263	-	468	148259781	-	Acry_0769	-	hypothetical protein
761	 65.62	0	862329..862616	-	95	148259782	-	Acry_0770	-	transcriptional coactivator/pterin dehydratase
762	 73.39	+1	862613..862954	-	113	148259783	-	Acry_0771	-	hypothetical protein
763	 65.11	0	863639..864151	-	170	148259784	-	Acry_0772	-	hypothetical protein
764	 60.12	-1	864167..864487	-	106	148259785	-	Acry_0773	-	hypothetical protein
765	 49.65	-2	864857..865138	+	93	148259786	-	Acry_0774	-	hypothetical protein
766	 61.87	-1	865223..865681	+	152	148259787	-	Acry_0775	-	hypothetical protein
767	 62.25	-1	865696..866919	+	407	148259788	-	Acry_0776	-	transposase, mutator type
768	 59.90	-1	866992..867198	+	68	148259789	-	Acry_0777	-	hypothetical protein
769	 62.39	-1	867272..867505	-	77	148259790	-	Acry_0778	-	hypothetical protein
770	 62.67	-1	867765..867989	-	74	148259791	-	Acry_0779	-	hypothetical protein
771	 44.66	-2	868142..868609	-	155	148259792	-	Acry_0780	-	hypothetical protein
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.