IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
596	 69.59	0	676190..677011	+	273	148259617	-	Acry_0602	-	hypothetical protein
597	 64.78	0	677370..678323	+	317	148259618	-	Acry_0603	-	formate hydrogenlyase subunit 4-like protein
598	 69.36	0	679005..680525	+	506	148259619	-	Acry_0605	-	NADH dehydrogenase (quinone)
599	 71.35	0	680528..681958	+	476	148259620	-	Acry_0606	-	NADH-ubiquinone oxidoreductase, chain 49kDa
600	 72.70	0	681972..682766	+	264	148259621	-	Acry_0607	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
601	 72.03	0	682756..684732	+	658	148259622	-	Acry_0608	-	NADH/ubiquinone/plastoquinone (complex I)
602	 68.68	0	684854..685201	+	115	148259623	-	Acry_0609	-	hypothetical protein
603	 66.91	0	685232..685648	+	138	148259624	-	Acry_0610	-	hypothetical protein
604	 74.17	+1	685864..686769	-	301	148259625	-	Acry_0611	-	dTDP-4-dehydrorhamnose reductase
605	 70.27	0	686771..687325	-	184	148259626	-	Acry_0612	-	dTDP-4-dehydrorhamnose 3,5-epimerase
606	 72.11	0	687322..688203	-	293	148259627	-	Acry_0613	-	glucose-1-phosphate thymidylyltransferase
607	 70.49	0	688200..689270	-	356	148259628	-	Acry_0614	-	dTDP-glucose 4,6-dehydratase
608	 73.53	+1	689593..693336	-	1247	148259629	-	Acry_0615	-	glycosyl transferase, group 1
609	 77.25	+1	693352..694995	-	547	148259630	-	Acry_0616	-	amidase
610	 74.06	+1	695061..696251	+	396	148259631	-	Acry_0617	-	deoxyribodipyrimidine photolyase-like protein
611	 68.98	0	696259..697035	-	258	148259632	-	Acry_0618	-	short-chain dehydrogenase/reductase SDR
612	 69.77	0	697154..698794	+	546	148259633	-	Acry_0619	-	AMP-dependent synthetase and ligase
613	 68.20	0	698919..700418	+	499	148259634	-	Acry_0620	-	2-methylcitrate dehydratase
614	 67.53	0	700438..701589	+	383	148259635	-	Acry_0621	-	methylcitrate synthase
615	 67.98	0	701600..702514	+	304	148259636	-	Acry_0622	-	methylisocitrate lyase
616	 69.13	0	702542..703717	+	391	148259637	-	Acry_0623	-	acyl-CoA dehydrogenase domain-containing protein
617	 69.85	0	703714..704811	+	365	148259638	-	Acry_0624	-	enoyl-CoA hydratase/isomerase
618	 72.67	0	704887..705786	+	299	148259639	-	Acry_0625	-	3-hydroxyisobutyrate dehydrogenase
619	 70.62	0	705828..707549	+	573	148259640	-	Acry_0626	-	AMP-dependent synthetase and ligase
620	 74.48	+1	707585..708352	+	255	148259641	-	Acry_0627	-	short-chain dehydrogenase/reductase SDR
621	 74.16	+1	708635..710383	-	582	148259642	-	Acry_0628	-	DNA mismatch repair protein MutL
622	 74.15	+1	710443..711351	+	302	148259643	-	Acry_0629	-	alpha/beta hydrolase domain-containing protein
623	 72.20	0	711311..712540	-	409	148259644	-	Acry_0630	-	major facilitator transporter
624	 70.53	0	712632..713201	-	189	148259645	-	Acry_0631	-	hypothetical protein
625	 69.29	0	713198..713731	-	177	148259646	-	Acry_0632	-	lipoprotein signal peptidase
626	 70.41	0	713728..716556	-	942	148259647	ileS	Acry_0633	-	isoleucyl-tRNA synthetase
627	 77.06	+1	717744..719003	+	419	148259648	-	Acry_0635	-	hypothetical protein
628	 77.09	+1	719000..720313	+	437	148259649	-	Acry_0636	-	hypothetical protein
629	 76.01	+1	720310..721593	+	427	148259650	-	Acry_0637	-	Ni Fe-hydrogenase III large subunit-like protein
630	 73.13	0	721586..722080	+	164	148259651	-	Acry_0638	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
631	 72.33	0	722073..722672	+	199	148259652	-	Acry_0639	-	ribonuclease H
632	 64.97	0	722692..722985	-	97	148259653	-	Acry_0640	-	hypothetical protein
633	 71.43	0	723209..724993	-	594	148259654	-	Acry_0641	-	hypothetical protein
634	 71.06	0	725177..726040	-	287	148259655	-	Acry_0642	-	prephenate dehydratase
635	 71.24	0	726037..726780	-	247	148259656	-	Acry_0643	-	3-deoxy-manno-octulosonate cytidylyltransferase
636	 66.88	0	726873..728297	+	474	148259657	-	Acry_0644	-	cytochrome c, class I
637	 72.24	0	728294..729064	+	256	148259658	-	Acry_0645	-	inositol monophosphatase
638	 70.98	0	729061..729501	+	146	148259659	-	Acry_0646	-	GCN5-related N-acetyltransferase
639	 69.48	0	729508..730572	-	354	148259660	-	Acry_0647	-	tartrate dehydrogenase
640	 65.04	0	730572..731981	-	469	148259661	-	Acry_0648	-	amino acid permease-associated region
641	 72.07	0	732034..732921	-	295	148259662	-	Acry_0649	-	lipid A biosynthesis acyltransferase
642	 76.90	+1	732918..733865	-	315	148259663	-	Acry_0650	-	tetraacyldisaccharide 4'-kinase
643	 76.27	+1	733865..735103	-	412	148259664	-	Acry_0651	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
644	 75.97	+1	735088..735807	-	239	148259665	-	Acry_0652	-	hypothetical protein
645	 72.17	0	735804..736748	-	314	148259666	-	Acry_0653	-	LysR family transcriptional regulator
646	 72.78	0	736906..737265	+	119	148259667	-	Acry_0654	-	hypothetical protein
647	 70.02	0	737296..737712	+	138	148259668	-	Acry_0655	-	hypothetical protein
648	 70.28	0	737807..738664	+	285	148259669	-	Acry_0656	-	rod shape-determining protein MreC
649	 70.08	0	738684..739211	+	175	148259670	-	Acry_0657	-	hypothetical protein
650	 68.91	0	739180..741099	+	639	148259671	-	Acry_0658	-	peptidoglycan glycosyltransferase
651	 65.29	0	741096..742256	+	386	148259672	-	Acry_0659	-	rod shape-determining protein RodA
652	 70.00	0	742463..743692	+	409	148259673	-	Acry_0660	-	nitric oxide dioxygenase
653	 64.60	0	743787..744755	+	322	148259674	-	Acry_0661	-	hypothetical protein
654	 68.18	0	744766..746412	+	548	148259675	-	Acry_0662	-	AMP-dependent synthetase and ligase
655	 74.80	+1	746481..750992	+	1503	148259676	-	Acry_0663	-	hypothetical protein
656	 63.41	0	751161..751775	+	204	148259677	rpsD	Acry_0664	-	30S ribosomal protein S4
657	 70.23	0	752071..752883	-	270	148259678	-	Acry_0665	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
658	 70.83	0	752922..753545	-	207	148259679	-	Acry_0666	-	carbonate dehydratase
659	 70.69	0	753873..754766	+	297	148259680	-	Acry_0667	-	helix-turn-helix domain-containing protein
660	 72.43	0	754888..757854	+	988	148259681	-	Acry_0668	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
661	 73.99	+1	757851..758669	+	272	148259682	-	Acry_0669	-	molybdopterin dehydrogenase, FAD-binding
662	 74.18	+1	758666..759184	+	172	148259683	-	Acry_0670	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
663	 70.91	0	759177..760730	+	517	148259684	-	Acry_0671	-	AMP-dependent synthetase and ligase
664	 67.92	0	760727..761524	+	265	148259685	-	Acry_0672	-	enoyl-CoA hydratase/isomerase
665	 72.81	0	761649..762332	+	227	148259686	-	Acry_0673	-	OmpA/MotB domain-containing protein
666	 70.06	0	762345..762668	+	107	148259687	-	Acry_0674	-	antibiotic biosynthesis monooxygenase
667	 66.88	0	762752..763213	+	153	148259688	-	Acry_0675	-	hypothetical protein
668	 72.92	0	763229..763804	+	191	148259689	-	Acry_0676	-	TetR family transcriptional regulator
669	 72.24	0	763844..764740	+	298	148259690	-	Acry_0677	-	LysR family transcriptional regulator
670	 75.75	+1	764754..766151	-	465	148259691	-	Acry_0678	-	GntR family transcriptional regulator
671	 71.71	0	766333..766848	+	171	148259692	-	Acry_0679	-	hypothetical protein
672	 76.04	+1	766845..767399	+	184	148259693	-	Acry_0680	-	hypothetical protein
673	 70.06	0	767465..768910	+	481	148259694	-	Acry_0681	-	methyl-accepting chemotaxis sensory transducer
674	 71.09	0	768963..769640	+	225	148259695	aat	Acry_0682	-	leucyl/phenylalanyl-tRNA--protein transferase
675	 64.64	0	769821..770660	+	279	148259696	-	Acry_0683	-	extracellular solute-binding protein
676	 66.27	0	770738..771490	+	250	148259697	-	Acry_0684	-	polar amino acid ABC transporter, inner membrane subunit
677	 68.23	0	771487..772254	+	255	148259698	-	Acry_0685	-	ABC transporter related
678	 72.74	0	772259..773296	-	345	148259699	-	Acry_0686	-	ribokinase-like domain-containing protein
679	 68.39	0	773304..774290	-	328	148259700	-	Acry_0687	-	hypothetical protein
680	 70.83	0	774696..775199	-	167	148259701	-	Acry_0688	-	hypothetical protein
681	 64.55	0	775370..775699	+	109	148259702	-	Acry_0689	-	hypothetical protein
682	 71.18	0	775828..776757	+	309	148259703	-	Acry_0690	-	substrate-binding region of ABC-type glycine betaine transport system
683	 75.02	+1	776809..777921	-	370	148259704	-	Acry_0691	-	hypothetical protein
684	 64.65	0	778081..778278	-	65	148259705	-	Acry_0692	-	hypothetical protein
685	 46.59	-2	778414..778956	-	180	148259706	-	Acry_0693	-	hypothetical protein
686	 52.96	-2	779014..779334	+	106	148259707	-	Acry_0694	-	hypothetical protein
687	 66.67	0	779788..780099	-	103	148259708	-	Acry_0695	-	ETC complex I subunit region
688	 63.99	0	780247..780732	-	161	148259709	-	Acry_0696	-	hypothetical protein
689	 74.39	+1	780752..781825	-	357	148259710	-	Acry_0697	-	histone deacetylase superfamily protein
690	 68.06	0	781892..783472	+	526	148259711	-	Acry_0698	-	peptide chain release factor 3
691	 49.40	-2	783694..784440	+	248	148259712	-	Acry_0699	-	RecB family-like nuclease
692	 49.60	-2	784498..784749	-	83	148259713	-	Acry_0700	-	hypothetical protein
693	 50.84	-2	784756..785052	+	98	148259714	-	Acry_0701	-	hypothetical protein
694	 61.39	-1	785167..785583	-	138	148259715	-	Acry_0702	-	hypothetical protein
695	 61.26	-1	785696..786157	+	153	148259716	-	Acry_0703	-	hypothetical protein
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.