IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
554	 65.37	0	623539..625305	+	588	148259575	-	Acry_0559	-	ABC transporter
555	 72.17	0	625321..626247	+	308	148259576	-	Acry_0560	-	glycerophosphoryl diester phosphodiesterase
556	 70.30	0	627119..628165	+	348	148259577	-	Acry_0561	-	secretion protein HlyD family protein
557	 65.83	0	628162..629712	+	516	148259578	-	Acry_0562	-	EmrB/QacA family drug resistance transporter
558	 69.62	0	629702..631261	+	519	148259579	-	Acry_0563	-	RND efflux system outer membrane lipoprotein
559	 71.30	0	631266..632279	-	337	148259580	-	Acry_0564	-	luciferase family protein
560	 63.58	0	632365..633594	-	409	148259581	-	Acry_0565	-	isocitrate dehydrogenase
561	 67.08	0	633710..634438	+	242	148259582	pyrE	Acry_0566	-	orotate phosphoribosyltransferase
562	 64.90	0	634908..636041	+	377	148259583	-	Acry_0567	-	diguanylate cyclase
563	 70.37	0	636115..638898	-	927	148259584	-	Acry_0568	-	glycoside hydrolase family 3 protein
564	 66.45	0	638908..641184	-	758	148259585	-	Acry_0569	-	cellulose synthase (UDP-forming)
565	 68.44	0	641181..642311	-	376	148259586	-	Acry_0570	-	endo-1,4-D-glucanase
566	 65.85	0	642316..643050	-	244	148259587	-	Acry_0571	-	hypothetical protein
567	 68.96	0	643047..645353	-	768	148259588	-	Acry_0572	-	hypothetical protein
568	 63.00	-1	646186..646458	+	90	148259589	-	Acry_0573	-	hypothetical protein
569	 58.17	-1	646486..647238	-	250	148259590	-	Acry_0574	-	two component transcriptional regulator
570	 63.99	0	647467..647802	-	111	148259591	-	Acry_0575	-	hypothetical protein
571	 65.96	0	647763..648470	-	235	148259592	-	Acry_0576	-	CRP/FNR family transcriptional regulator
572	 69.43	0	648663..649385	+	240	148259593	-	Acry_0577	-	two component transcriptional regulator
573	 69.62	0	649401..651299	-	632	148259594	-	Acry_0578	-	PAS/PAC sensor hybrid histidine kinase
574	 66.45	0	651580..652041	+	153	148259595	-	Acry_0579	-	membrane-flanked domain-containing protein
575	 73.11	0	652232..653053	-	273	148259596	-	Acry_0580	-	hypothetical protein
576	 72.78	0	653209..654663	+	484	148259597	-	Acry_0581	-	hypothetical protein
577	 76.75	+1	654707..655846	+	379	148259598	recF	Acry_0582	-	recombination protein F
578	 72.37	0	655896..656825	-	309	148259599	-	Acry_0583	-	riboflavin biosynthesis protein RibF
579	 68.14	0	656822..657364	-	180	148259600	-	Acry_0584	-	dehydratase
580	 70.85	0	657345..658277	-	310	148259601	-	Acry_0585	-	glycosyl transferase family protein
581	 73.47	+1	658402..659577	+	391	148259602	-	Acry_0586	-	hypothetical protein
582	 70.33	0	659583..661058	+	491	148259603	-	Acry_0587	-	major facilitator transporter
583	 71.84	0	661089..662828	+	579	148259604	-	Acry_0588	-	ABC transporter related
584	 79.08	+2	663071..663682	+	203	148259605	-	Acry_0589	-	hypothetical protein
585	 69.20	0	663877..665019	+	380	148259606	-	Acry_0590	-	glycosyl transferase, group 1
586	 59.40	-1	665025..665795	+	256	148259607	-	Acry_0591	-	glucose-1-phosphate cytidylyltransferase
587	 66.57	0	665792..666868	+	358	148259608	-	Acry_0592	-	CDP-glucose 4,6-dehydratase
588	 64.13	0	666868..667419	+	183	148259609	-	Acry_0593	-	dTDP-4-dehydrorhamnose 3,5-epimerase
589	 61.93	-1	667416..668639	+	407	148259610	-	Acry_0594	-	C-methyltransferase
590	 50.25	-2	668788..669804	+	338	148259611	-	Acry_0595	-	hypothetical protein
591	 60.38	-1	669955..670797	+	280	148259612	-	Acry_0596	-	NAD-dependent epimerase/dehydratase
592	 55.64	-2	670924..671694	+	256	148259613	-	Acry_0597	-	cephalosporin hydroxylase
593	 60.35	-1	672876..674489	+	537	148259614	-	Acry_0599	-	methyl-accepting chemotaxis sensory transducer
594	 64.68	0	674489..675043	+	184	148259615	-	Acry_0600	-	electron transport protein SCO1/SenC
595	 72.72	0	675332..676141	+	269	148259616	-	Acry_0601	-	hypothetical protein
596	 69.59	0	676190..677011	+	273	148259617	-	Acry_0602	-	hypothetical protein
597	 64.78	0	677370..678323	+	317	148259618	-	Acry_0603	-	formate hydrogenlyase subunit 4-like protein
598	 69.36	0	679005..680525	+	506	148259619	-	Acry_0605	-	NADH dehydrogenase (quinone)
599	 71.35	0	680528..681958	+	476	148259620	-	Acry_0606	-	NADH-ubiquinone oxidoreductase, chain 49kDa
600	 72.70	0	681972..682766	+	264	148259621	-	Acry_0607	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
601	 72.03	0	682756..684732	+	658	148259622	-	Acry_0608	-	NADH/ubiquinone/plastoquinone (complex I)
602	 68.68	0	684854..685201	+	115	148259623	-	Acry_0609	-	hypothetical protein
603	 66.91	0	685232..685648	+	138	148259624	-	Acry_0610	-	hypothetical protein
604	 74.17	+1	685864..686769	-	301	148259625	-	Acry_0611	-	dTDP-4-dehydrorhamnose reductase
605	 70.27	0	686771..687325	-	184	148259626	-	Acry_0612	-	dTDP-4-dehydrorhamnose 3,5-epimerase
606	 72.11	0	687322..688203	-	293	148259627	-	Acry_0613	-	glucose-1-phosphate thymidylyltransferase
607	 70.49	0	688200..689270	-	356	148259628	-	Acry_0614	-	dTDP-glucose 4,6-dehydratase
608	 73.53	+1	689593..693336	-	1247	148259629	-	Acry_0615	-	glycosyl transferase, group 1
609	 77.25	+1	693352..694995	-	547	148259630	-	Acry_0616	-	amidase
610	 74.06	+1	695061..696251	+	396	148259631	-	Acry_0617	-	deoxyribodipyrimidine photolyase-like protein
611	 68.98	0	696259..697035	-	258	148259632	-	Acry_0618	-	short-chain dehydrogenase/reductase SDR
612	 69.77	0	697154..698794	+	546	148259633	-	Acry_0619	-	AMP-dependent synthetase and ligase
613	 68.20	0	698919..700418	+	499	148259634	-	Acry_0620	-	2-methylcitrate dehydratase
614	 67.53	0	700438..701589	+	383	148259635	-	Acry_0621	-	methylcitrate synthase
615	 67.98	0	701600..702514	+	304	148259636	-	Acry_0622	-	methylisocitrate lyase
616	 69.13	0	702542..703717	+	391	148259637	-	Acry_0623	-	acyl-CoA dehydrogenase domain-containing protein
617	 69.85	0	703714..704811	+	365	148259638	-	Acry_0624	-	enoyl-CoA hydratase/isomerase
618	 72.67	0	704887..705786	+	299	148259639	-	Acry_0625	-	3-hydroxyisobutyrate dehydrogenase
619	 70.62	0	705828..707549	+	573	148259640	-	Acry_0626	-	AMP-dependent synthetase and ligase
620	 74.48	+1	707585..708352	+	255	148259641	-	Acry_0627	-	short-chain dehydrogenase/reductase SDR
621	 74.16	+1	708635..710383	-	582	148259642	-	Acry_0628	-	DNA mismatch repair protein MutL
622	 74.15	+1	710443..711351	+	302	148259643	-	Acry_0629	-	alpha/beta hydrolase domain-containing protein
623	 72.20	0	711311..712540	-	409	148259644	-	Acry_0630	-	major facilitator transporter
624	 70.53	0	712632..713201	-	189	148259645	-	Acry_0631	-	hypothetical protein
625	 69.29	0	713198..713731	-	177	148259646	-	Acry_0632	-	lipoprotein signal peptidase
626	 70.41	0	713728..716556	-	942	148259647	ileS	Acry_0633	-	isoleucyl-tRNA synthetase
627	 77.06	+1	717744..719003	+	419	148259648	-	Acry_0635	-	hypothetical protein
628	 77.09	+1	719000..720313	+	437	148259649	-	Acry_0636	-	hypothetical protein
629	 76.01	+1	720310..721593	+	427	148259650	-	Acry_0637	-	Ni Fe-hydrogenase III large subunit-like protein
630	 73.13	0	721586..722080	+	164	148259651	-	Acry_0638	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
631	 72.33	0	722073..722672	+	199	148259652	-	Acry_0639	-	ribonuclease H
632	 64.97	0	722692..722985	-	97	148259653	-	Acry_0640	-	hypothetical protein
633	 71.43	0	723209..724993	-	594	148259654	-	Acry_0641	-	hypothetical protein
634	 71.06	0	725177..726040	-	287	148259655	-	Acry_0642	-	prephenate dehydratase
635	 71.24	0	726037..726780	-	247	148259656	-	Acry_0643	-	3-deoxy-manno-octulosonate cytidylyltransferase
636	 66.88	0	726873..728297	+	474	148259657	-	Acry_0644	-	cytochrome c, class I
637	 72.24	0	728294..729064	+	256	148259658	-	Acry_0645	-	inositol monophosphatase
638	 70.98	0	729061..729501	+	146	148259659	-	Acry_0646	-	GCN5-related N-acetyltransferase
639	 69.48	0	729508..730572	-	354	148259660	-	Acry_0647	-	tartrate dehydrogenase
640	 65.04	0	730572..731981	-	469	148259661	-	Acry_0648	-	amino acid permease-associated region
641	 72.07	0	732034..732921	-	295	148259662	-	Acry_0649	-	lipid A biosynthesis acyltransferase
642	 76.90	+1	732918..733865	-	315	148259663	-	Acry_0650	-	tetraacyldisaccharide 4'-kinase
643	 76.27	+1	733865..735103	-	412	148259664	-	Acry_0651	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
644	 75.97	+1	735088..735807	-	239	148259665	-	Acry_0652	-	hypothetical protein
645	 72.17	0	735804..736748	-	314	148259666	-	Acry_0653	-	LysR family transcriptional regulator
646	 72.78	0	736906..737265	+	119	148259667	-	Acry_0654	-	hypothetical protein
647	 70.02	0	737296..737712	+	138	148259668	-	Acry_0655	-	hypothetical protein
648	 70.28	0	737807..738664	+	285	148259669	-	Acry_0656	-	rod shape-determining protein MreC
649	 70.08	0	738684..739211	+	175	148259670	-	Acry_0657	-	hypothetical protein
650	 68.91	0	739180..741099	+	639	148259671	-	Acry_0658	-	peptidoglycan glycosyltransferase
651	 65.29	0	741096..742256	+	386	148259672	-	Acry_0659	-	rod shape-determining protein RodA
652	 70.00	0	742463..743692	+	409	148259673	-	Acry_0660	-	nitric oxide dioxygenase
653	 64.60	0	743787..744755	+	322	148259674	-	Acry_0661	-	hypothetical protein
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.