IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2965	 71.53	0	3286492..3287664	+	390	148261986	-	Acry_3004	-	3-oxoadipate enol-lactonase
2966	 68.86	0	3287698..3289980	-	760	148261987	-	Acry_3005	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
2967	 66.29	0	3289977..3290513	-	178	148261988	-	Acry_3006	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
2968	 73.77	+1	3290582..3291130	-	182	148261989	-	Acry_3007	-	MarR family transcriptional regulator
2969	 70.98	0	3291377..3291886	+	169	148261990	-	Acry_3008	-	L-2,4-diaminobutyric acid acetyltransferase
2970	 69.66	0	3291883..3293187	+	434	148261991	-	Acry_3009	-	diaminobutyrate--2-oxoglutarate aminotransferase
2971	 64.91	0	3293219..3293617	+	132	148261992	ectC	Acry_3010	-	L-ectoine synthase
2972	 66.12	0	3293658..3294578	+	306	148261993	-	Acry_3011	-	ectoine hydroxylase
2973	 69.53	0	3294575..3296041	+	488	148261994	-	Acry_3012	-	aspartate kinase
2974	 69.51	0	3296279..3297508	+	409	148261995	-	Acry_3013	-	major facilitator transporter
2975	 75.41	+1	3297519..3298124	-	201	148261996	-	Acry_3014	-	hypothetical protein
2976	 66.77	0	3298121..3299110	-	329	148261997	-	Acry_3015	-	hypothetical protein
2977	 70.53	0	3299133..3299882	-	249	148261998	-	Acry_3016	-	ABC transporter related
2978	 74.10	+1	3299879..3300967	-	362	148261999	-	Acry_3017	-	hypothetical protein
2979	 68.54	0	3300964..3301602	-	212	148262000	-	Acry_3018	-	integral membrane protein TerC
2980	 69.88	0	3301674..3303011	+	445	148262001	-	Acry_3019	-	adenylosuccinate lyase
2981	 74.86	+1	3303025..3303744	+	239	148262002	-	Acry_3020	-	hypothetical protein
2982	 67.67	0	3303811..3305304	-	497	148262003	-	Acry_3021	-	methylmalonate-semialdehyde dehydrogenase
2983	 71.93	0	3305334..3306662	+	442	148262004	-	Acry_3022	-	amidase
2984	 68.32	0	3306754..3307359	+	201	148262005	-	Acry_3023	-	hypothetical protein
2985	 64.78	0	3307433..3309235	-	600	148262006	-	Acry_3024	-	flavoprotein involved in K+ transport-like protein
2986	 57.46	-2	3309401..3309889	+	162	148262007	-	Acry_3025	-	hypothetical protein
2987	 69.90	0	3309961..3310794	-	277	148262008	-	Acry_3026	-	hypothetical protein
2988	 73.53	+1	3310962..3312797	-	611	148262009	-	Acry_3027	-	heavy metal translocating P-type ATPase
2989	 67.05	0	3312958..3313215	+	85	148262010	-	Acry_3028	-	hypothetical protein
2990	 67.95	0	3313220..3313996	+	258	148262011	-	Acry_3029	-	enoyl-(acyl-carrier-protein)-like protein
2991	 68.75	0	3314027..3315847	+	606	148262012	-	Acry_3030	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
2992	 70.13	0	3315860..3317275	+	471	148262013	-	Acry_3031	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
2993	 70.66	0	3317290..3317640	+	116	148262014	-	Acry_3032	-	alkylhydroperoxidase
2994	 71.23	0	3317713..3318216	+	167	148262015	-	Acry_3033	-	peptidase A24A, prepilin type IV
2995	 63.40	0	3318339..3319685	+	448	148262016	-	Acry_3034	-	permease for cytosine/purines, uracil, thiamine, allantoin
2996	 62.38	-1	3319745..3319954	+	69	148262017	-	Acry_3035	-	hypothetical protein
2997	 64.81	0	3319929..3320414	-	161	148262018	-	Acry_3036	-	hypothetical protein
2998	 70.23	0	3321846..3322406	+	186	148262019	-	Acry_3038	-	TetR family transcriptional regulator
2999	 64.62	0	3322394..3323173	-	259	148262020	-	Acry_3039	-	hypothetical protein
3000	 69.53	0	3323233..3323826	-	197	148262021	-	Acry_3040	-	S-isoprenylcysteine methyltransferase-like protein
3001	 64.50	0	3323942..3325186	+	414	148262022	-	Acry_3041	-	oxidoreductase, molybdopterin binding
3002	 66.41	0	3325170..3325949	+	259	148262023	-	Acry_3042	-	cytochrome c, class I
3003	 61.74	-1	3325960..3326304	+	114	148262024	-	Acry_3043	-	cytochrome c, class I
3004	 68.28	0	3326352..3326846	+	164	148262025	-	Acry_3044	-	secreted protein-like protein
3005	 62.22	-1	3326855..3327169	+	104	148262026	-	Acry_3045	-	hypothetical protein
3006	 62.63	-1	3327173..3328063	+	296	148262027	-	Acry_3046	-	hypothetical protein
3007	 69.97	0	3328060..3328362	+	100	148262028	-	Acry_3047	-	hypothetical protein
3008	 64.48	0	3328387..3330123	+	578	148262029	-	Acry_3048	-	5'-nucleotidase domain-containing protein
3009	 65.30	0	3330120..3330557	+	145	148262030	-	Acry_3049	-	hypothetical protein
3010	 66.54	0	3330657..3331442	+	261	148262031	-	Acry_3050	-	hypothetical protein
3011	 68.67	0	3331494..3332993	+	499	148262032	-	Acry_3051	-	tetratricopeptide TPR_4
3012	 68.01	0	3333135..3333506	-	123	148262033	-	Acry_3052	-	hypothetical protein
3013	 64.36	0	3333561..3333950	-	129	148262034	-	Acry_3053	-	hypothetical protein
3014	 64.85	0	3334096..3336072	-	658	148262035	-	Acry_3054	-	phosphoesterase
3015	 67.77	0	3336222..3337400	-	392	148262036	-	Acry_3055	-	acetate kinase
3016	 65.27	0	3337435..3338367	-	310	148262037	-	Acry_3056	-	putative adenylate/guanylate cyclase
3017	 62.90	-1	3338527..3339960	-	477	148262038	-	Acry_3057	-	glutamine synthetase, type I
3018	 59.29	-1	3340043..3340381	-	112	148262039	-	Acry_3058	-	nitrogen regulatory protein P-II
3019	 65.83	0	3340645..3341838	+	397	148262040	-	Acry_3059	-	hypothetical protein
3020	 66.55	0	3341876..3342730	+	284	148262041	-	Acry_3060	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3021	 65.49	0	3342727..3343488	+	253	148262042	-	Acry_3061	-	NAD(+) kinase
3022	 63.45	0	3343997..3344524	-	175	148262043	-	Acry_3062	-	hypothetical protein
3023	 66.87	0	3344546..3345529	-	327	148262044	-	Acry_3063	-	malate dehydrogenase
3024	 71.77	0	3345626..3346213	+	195	148262045	-	Acry_3064	-	hypothetical protein
3025	 63.07	-1	3346262..3346567	+	101	148262046	-	Acry_3065	-	hypothetical protein
3026	 65.50	0	3346606..3347547	-	313	148262047	-	Acry_3066	-	LysR family transcriptional regulator
3027	 60.08	-1	3348345..3348830	-	161	148262048	-	Acry_3068	-	hypothetical protein
3028	 66.55	0	3348860..3351508	-	882	148262049	-	Acry_3069	-	ATPase
3029	 70.33	0	3351662..3352780	+	372	148262050	-	Acry_3070	-	ImpA domain-containing protein
3030	 64.99	0	3352802..3354295	-	497	148262051	-	Acry_3071	-	hypothetical protein
3031	 63.92	0	3354316..3355809	-	497	148262052	-	Acry_3072	-	hypothetical protein
3032	 59.37	-1	3355813..3356319	-	168	148262053	-	Acry_3073	-	hypothetical protein
3033	 67.89	0	3356647..3357462	+	271	148262054	-	Acry_3074	-	virulence protein, SciE type
3034	 67.43	0	3357462..3357983	+	173	148262055	-	Acry_3075	-	GPW/gp25 family protein
3035	 67.16	0	3357976..3359793	+	605	148262056	-	Acry_3076	-	hypothetical protein
3036	 69.01	0	3359790..3360899	+	369	148262057	-	Acry_3077	-	hypothetical protein
3037	 66.86	0	3360896..3362434	+	512	148262058	-	Acry_3078	-	methyltransferase type 12
3038	 67.30	0	3362448..3363557	-	369	148262059	-	Acry_3079	-	hypothetical protein
3039	 65.49	0	3363554..3364147	-	197	148262060	-	Acry_3080	-	hypothetical protein
3040	 65.38	0	3364397..3365095	-	232	148262061	-	Acry_3081	-	phospholipid/glycerol acyltransferase
3041	 67.88	0	3365095..3365751	-	218	148262062	-	Acry_3082	-	hypothetical protein
3042	 71.95	0	3365748..3366674	-	308	148262063	-	Acry_3083	-	hypothetical protein
3043	 69.20	0	3366687..3367358	-	223	148262064	-	Acry_3084	-	cell division ATP-binding protein FtsE
3044	 73.93	+1	3367420..3367956	+	178	148262065	-	Acry_3085	-	Zinc finger-domain-containing protein
3045	 70.28	0	3368005..3369057	+	350	148262066	-	Acry_3086	-	membrane dipeptidase
3046	 68.53	0	3369104..3370924	-	606	148262067	-	Acry_3087	-	heat shock protein 90
3047	 73.87	+1	3371062..3373575	+	837	148262068	-	Acry_3088	-	helicase domain-containing protein
3048	 72.39	0	3373562..3373858	+	98	148262069	-	Acry_3089	-	RNA-binding S4 domain-containing protein
3049	 60.96	-1	3373936..3374268	+	110	148262070	-	Acry_3090	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3050	 69.16	0	3374391..3375191	+	266	148262071	-	Acry_3091	-	CarD family transcriptional regulator
3051	 67.74	0	3375393..3376694	+	433	148262072	-	Acry_3092	-	Mn2+/Fe2+ transporter
3052	 66.40	0	3376691..3377428	-	245	148262073	-	Acry_3093	-	ABC transporter related
3053	 68.23	0	3377421..3379403	-	660	148262074	-	Acry_3094	-	ABC transporter related
3054	 65.70	0	3379410..3380339	-	309	148262075	-	Acry_3095	-	inner-membrane translocator
3055	 64.97	0	3380350..3381585	-	411	148262076	-	Acry_3096	-	extracellular ligand-binding receptor
3056	 66.17	0	3381873..3383888	-	671	148262077	-	Acry_3097	-	TonB-dependent receptor, plug
3057	 69.01	0	3384238..3384921	-	227	148262078	-	Acry_3098	-	haloacid dehalogenase, type II
3058	 68.67	0	3384936..3385634	-	232	148262079	-	Acry_3099	-	glutathione S-transferase domain-containing protein
3059	 67.80	0	3385627..3385890	-	87	148262080	-	Acry_3100	-	hypothetical protein
3060	 65.57	0	3385887..3386525	-	212	148262081	-	Acry_3101	-	TetR family transcriptional regulator
3061	 64.86	0	3386588..3387253	+	221	148262082	-	Acry_3102	-	protein-disulfide isomerase-like protein
3062	 65.99	0	3387347..3388531	+	394	148262083	-	Acry_3103	-	O-succinylhomoserine sulfhydrylase
3063	 65.57	0	3388749..3389021	+	90	148262084	-	Acry_3104	-	ribosomal protein S20
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.