IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2613	 69.94	0	2911471..2912661	-	396	148261634	-	Acry_2651	-	phosphoserine aminotransferase
2614	 72.58	0	2912766..2913509	-	247	148261635	-	Acry_2652	-	hemolysin A
2615	 67.57	0	2913517..2913849	-	110	148261636	-	Acry_2653	-	XRE family transcriptional regulator
2616	 77.80	+1	2914129..2915376	-	415	148261637	-	Acry_2654	-	Fmu (Sun) domain-containing protein
2617	 62.75	-1	2915602..2915907	+	101	148261638	-	Acry_2655	-	protein of unknown function YGGT
2618	 75.95	+1	2915916..2916755	+	279	148261639	-	Acry_2656	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
2619	 74.98	+1	2916855..2918309	-	484	148261640	-	Acry_2657	-	lytic transglycosylase, catalytic
2620	 80.95	+2	2918402..2918737	+	111	148261641	-	Acry_2658	-	hypothetical protein
2621	 73.98	+1	2918822..2919805	+	327	148261642	-	Acry_2659	-	aldo/keto reductase
2622	 70.11	0	2919875..2920513	-	212	148261643	-	Acry_2660	-	GTP cyclohydrolase I
2623	 68.35	0	2920614..2921087	-	157	148261644	apaG	Acry_2661	-	ApaG
2624	 76.70	+1	2921173..2922846	+	557	148261645	-	Acry_2662	-	tetratricopeptide domain-containing protein
2625	 77.25	+1	2922857..2923735	+	292	148261646	-	Acry_2663	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2626	 70.40	0	2923803..2924498	+	231	148261647	-	Acry_2664	-	phosphoribosylformylglycinamidine synthase I
2627	 70.92	0	2924495..2926678	+	727	148261648	-	Acry_2665	-	phosphoribosylformylglycinamidine synthase II
2628	 69.23	0	2926697..2926930	+	77	148261649	-	Acry_2666	-	BolA family protein
2629	 64.08	0	2926964..2927311	+	115	148261650	-	Acry_2667	-	glutaredoxin-like protein
2630	 77.00	+1	2927362..2928561	+	399	148261651	-	Acry_2668	-	hypothetical protein
2631	 70.30	0	2928567..2932061	-	1164	148261652	-	Acry_2669	-	pyruvate carboxylase
2632	 71.45	0	2932174..2933844	+	556	148261653	-	Acry_2670	-	amine oxidase
2633	 68.20	0	2933953..2934606	+	217	148261654	-	Acry_2671	-	multiple antibiotic resistance (MarC)-related protein
2634	 49.44	-2	2934850..2935470	-	206	148261655	-	Acry_2672	-	hypothetical protein
2635	 38.89	-2	2935481..2935696	+	71	148261656	-	Acry_2673	-	hypothetical protein
2636	 76.60	+1	2935866..2936570	-	234	148261657	-	Acry_2674	-	hypothetical protein
2637	 71.99	0	2936632..2937966	-	444	148261658	gltX	Acry_2675	-	glutamyl-tRNA synthetase
2638	 69.52	0	2938058..2939248	+	396	148261659	-	Acry_2676	-	major facilitator transporter
2639	 72.67	0	2939309..2939758	+	149	148261660	-	Acry_2677	-	manganese transport regulator MntR
2640	 72.81	0	2939903..2940358	+	151	148261661	-	Acry_2678	-	hypothetical protein
2641	 73.18	0	2940374..2941432	-	352	148261662	-	Acry_2679	-	hypothetical protein
2642	 74.28	+1	2941441..2941716	-	91	148261663	-	Acry_2680	-	acylphosphatase
2643	 77.07	+1	2941713..2942414	-	233	148261664	-	Acry_2681	-	ATP12 ATPase
2644	 74.44	+1	2942425..2945112	-	895	148261665	-	Acry_2682	-	AsmA family protein
2645	 73.08	0	2945176..2947077	-	633	148261666	-	Acry_2683	-	hypothetical protein
2646	 74.12	+1	2947083..2948102	-	339	148261667	-	Acry_2684	-	hypothetical protein
2647	 75.73	+1	2948221..2949180	+	319	148261668	-	Acry_2685	-	succinylglutamate desuccinylase/aspartoacylase
2648	 72.81	0	2949191..2950069	-	292	148261669	-	Acry_2686	-	CDP-alcohol phosphatidyltransferase
2649	 73.04	0	2950066..2950755	-	229	148261670	-	Acry_2687	-	phosphatidylserine decarboxylase
2650	 76.06	+1	2950816..2951901	-	361	148261671	-	Acry_2688	-	peptidoglycan-binding LysM
2651	 71.11	0	2951995..2952579	+	194	148261672	-	Acry_2689	-	hypothetical protein
2652	 75.60	+1	2952725..2953597	-	290	148261673	-	Acry_2690	-	ribonuclease G and E-like protein
2653	 73.54	+1	2953594..2954160	-	188	148261674	-	Acry_2691	-	maf protein
2654	 56.62	-2	2954174..2954392	-	72	148261675	-	Acry_2692	-	translation initiation factor IF-1
2655	 74.52	+1	2954445..2955755	-	436	148261676	-	Acry_2693	-	histidinol dehydrogenase
2656	 71.01	0	2955752..2956465	-	237	148261677	hisG	Acry_2694	-	ATP phosphoribosyltransferase catalytic subunit
2657	 71.64	0	2956513..2957457	+	314	148261678	-	Acry_2695	-	pyruvate carboxyltransferase
2658	 73.20	+1	2957468..2958646	+	392	148261679	-	Acry_2696	-	L-carnitine dehydratase/bile acid-inducible protein F
2659	 69.30	0	2958674..2959546	+	290	148261680	-	Acry_2697	-	3-hydroxyisobutyrate dehydrogenase
2660	 72.15	0	2959538..2959756	-	72	148261681	-	Acry_2698	-	hypothetical protein
2661	 69.44	0	2959852..2960790	+	312	148261682	-	Acry_2699	-	hypothetical protein
2662	 69.31	0	2960807..2961979	+	390	148261683	-	Acry_2700	-	radical SAM protein
2663	 71.89	0	2962005..2962712	+	235	148261684	-	Acry_2701	-	short-chain dehydrogenase/reductase SDR
2664	 69.31	0	2962859..2963161	+	100	148261685	rpmB	Acry_2702	-	50S ribosomal protein L28
2665	 67.46	0	2963363..2963866	+	167	148261686	-	Acry_2703	-	hypothetical protein
2666	 76.26	+1	2963863..2964675	+	270	148261687	-	Acry_2704	-	pyrroline-5-carboxylate reductase
2667	 72.16	0	2965020..2966549	+	509	148261688	-	Acry_2705	-	methyl-accepting chemotaxis sensory transducer
2668	 67.66	0	2966555..2966857	+	100	148261689	-	Acry_2706	-	hypothetical protein
2669	 65.85	0	2966854..2967219	+	121	148261690	-	Acry_2707	-	response regulator receiver protein
2670	 69.75	0	2967216..2969423	+	735	148261691	-	Acry_2708	-	CheA signal transduction histidine kinase
2671	 66.24	0	2969427..2969891	+	154	148261692	-	Acry_2709	-	putative CheW protein
2672	 67.34	0	2969888..2970784	+	298	148261693	-	Acry_2710	-	protein-glutamate O-methyltransferase
2673	 69.90	0	2970781..2971833	+	350	148261694	-	Acry_2711	-	chemotaxis-specific methylesterase
2674	 62.63	-1	2971833..2972228	+	131	148261695	-	Acry_2712	-	response regulator receiver protein
2675	 70.86	0	2972225..2972797	+	190	148261696	-	Acry_2713	-	CheD, stimulates methylation of MCP proteins
2676	 67.92	0	2972814..2973212	+	132	148261697	-	Acry_2714	-	hypothetical protein
2677	 65.33	0	2973448..2973747	+	99	148261698	-	Acry_2715	-	hypothetical protein
2678	 65.57	0	2973767..2974312	-	181	148261699	-	Acry_2716	-	hypothetical protein
2679	 71.57	0	2974512..2975348	+	278	148261700	-	Acry_2717	-	beta-lactamase domain-containing protein
2680	 66.44	0	2975412..2976302	-	296	148261701	-	Acry_2718	-	RNA polymerase factor sigma-32
2681	 71.87	0	2976587..2977585	-	332	148261702	-	Acry_2719	-	RluA family pseudouridine synthase
2682	 74.53	+1	2977636..2978004	+	122	148261703	-	Acry_2720	-	hypothetical protein
2683	 53.92	-2	2978619..2979230	+	203	148261704	-	Acry_2721	-	hypothetical protein
2684	 68.37	0	2979382..2980788	+	468	148261705	-	Acry_2722	-	tricarballylate dehydrogenase
2685	 69.71	0	2980775..2981893	+	372	148261706	-	Acry_2723	-	CitB domain-containing protein
2686	 65.06	0	2981990..2983294	+	434	148261707	-	Acry_2724	-	major facilitator transporter
2687	 56.72	-2	2983350..2983892	-	180	148261708	-	Acry_2725	-	hypothetical protein
2688	 75.04	+1	2984412..2986178	-	588	148261709	-	Acry_2726	-	amidase
2689	 73.23	+1	2986175..2989663	-	1162	148261710	-	Acry_2727	-	biotin carboxylation domain-containing protein
2690	 66.03	0	2989660..2990292	-	210	148261711	-	Acry_2728	-	hypothetical protein
2691	 72.03	0	2990300..2991082	-	260	148261712	-	Acry_2729	-	hypothetical protein
2692	 71.41	0	2991155..2991997	-	280	148261713	-	Acry_2730	-	ABC transporter related
2693	 68.25	0	2991994..2992812	-	272	148261714	-	Acry_2731	-	binding-protein-dependent transport systems inner membrane component
2694	 63.70	0	2992821..2993900	-	359	148261715	-	Acry_2732	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
2695	 79.51	+2	2994341..2994916	+	191	148261716	-	Acry_2733	-	hypothetical protein
2696	 72.20	0	2995015..2996388	+	457	148261717	-	Acry_2734	-	glucose/sorbosone dehydrogenase-like protein
2697	 74.46	+1	2996407..2999511	-	1034	148261718	-	Acry_2735	-	acriflavin resistance protein
2698	 78.50	+2	2999521..3000441	-	306	148261719	-	Acry_2736	-	hypothetical protein
2699	 77.92	+1	3000438..3001841	-	467	148261720	-	Acry_2737	-	outer membrane efflux protein
2700	 69.68	0	3002001..3002930	-	309	148261721	-	Acry_2738	-	dihydrodipicolinate synthetase
2701	 69.12	0	3003165..3003938	+	257	148261722	-	Acry_2739	-	hypothetical protein
2702	 73.71	+1	3003987..3004838	+	283	148261723	-	Acry_2740	-	undecaprenyl diphosphate synthase
2703	 71.16	0	3005056..3005967	+	303	148261724	-	Acry_2741	-	LysR family transcriptional regulator
2704	 73.09	0	3006015..3006917	+	300	148261725	-	Acry_2742	-	hypothetical protein
2705	 68.35	0	3006914..3007744	+	276	148261726	-	Acry_2743	-	extracellular solute-binding protein
2706	 68.18	0	3007760..3008488	+	242	148261727	-	Acry_2744	-	polar amino acid ABC transporter, inner membrane subunit
2707	 69.21	0	3008481..3009227	+	248	148261728	-	Acry_2745	-	ABC transporter related
2708	 71.86	0	3009251..3010636	+	461	148261729	-	Acry_2746	-	fumarate lyase
2709	 69.33	0	3010889..3011377	-	162	148261730	-	Acry_2747	-	xanthine-guanine phosphoribosyltransferase
2710	 67.23	0	3011377..3011730	-	117	148261731	-	Acry_2748	-	export-related chaperone CsaA
2711	 72.38	0	3011819..3013429	+	536	148261732	-	Acry_2749	-	gamma-glutamyltransferase
2712	 67.15	0	3013494..3014120	+	208	148261733	-	Acry_2750	-	hypothetical protein
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.