IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2545	 68.65	0	2838103..2838756	-	217	148261566	-	Acry_2583	-	hypothetical protein
2546	 64.02	0	2838796..2839551	-	251	148261567	-	Acry_2584	-	peptidase C39, bacteriocin processing
2547	 67.93	0	2839609..2840004	-	131	148261568	-	Acry_2585	-	hypothetical protein
2548	 65.48	0	2840098..2840685	-	195	148261569	-	Acry_2586	-	hypothetical protein
2549	 68.00	0	2840936..2842285	-	449	148261570	-	Acry_2587	-	hypothetical protein
2550	 69.51	0	2842275..2843330	-	351	148261571	-	Acry_2588	-	sigma-54 dependent trancsriptional regulator
2551	 34.31	-2	2843379..2843684	-	101	148261572	-	Acry_2589	-	hypothetical protein
2552	 66.72	0	2843711..2845639	+	642	148261573	-	Acry_2590	-	methyl-accepting chemotaxis sensory transducer
2553	 68.46	0	2845679..2846626	-	315	148261574	-	Acry_2591	-	gluconolactonase
2554	 69.61	0	2846623..2847573	-	316	148261575	-	Acry_2592	-	monosaccharide-transporting ATPase
2555	 68.27	0	2847570..2848568	-	332	148261576	-	Acry_2593	-	inner-membrane translocator
2556	 69.70	0	2848558..2850039	-	493	148261577	-	Acry_2594	-	ABC transporter related
2557	 65.60	0	2850036..2851160	-	374	148261578	-	Acry_2595	-	ABC-type sugar transport system periplasmic component-like protein
2558	 64.59	0	2851245..2852159	-	304	148261579	-	Acry_2596	-	gluconolactonase
2559	 74.24	+1	2852262..2852882	-	206	148261580	-	Acry_2597	-	KDPG and KHG aldolase
2560	 74.07	+1	2852870..2853760	-	296	148261581	-	Acry_2598	-	2-keto-3-deoxy-galactonokinase
2561	 66.67	0	2853788..2854561	-	257	148261582	-	Acry_2599	-	short-chain dehydrogenase/reductase SDR
2562	 67.18	0	2854607..2855380	-	257	148261583	-	Acry_2600	-	ABC transporter related
2563	 67.08	0	2855377..2856351	-	324	148261584	-	Acry_2601	-	monosaccharide-transporting ATPase
2564	 65.29	0	2856476..2857567	-	363	148261585	-	Acry_2602	-	ABC-type sugar transport system periplasmic component-like protein
2565	 72.04	0	2857789..2858607	+	272	148261586	-	Acry_2603	-	short-chain dehydrogenase/reductase SDR
2566	 59.82	-1	2858574..2859011	-	145	148261587	-	Acry_2604	-	hypothetical protein
2567	 66.19	0	2859078..2860118	+	346	148261588	-	Acry_2605	-	periplasmic binding protein/LacI transcriptional regulator
2568	 66.48	0	2860210..2861292	+	360	148261589	-	Acry_2606	-	monosaccharide-transporting ATPase
2569	 67.94	0	2861289..2862071	+	260	148261590	-	Acry_2607	-	ABC transporter related
2570	 69.17	0	2862123..2863160	+	345	148261591	-	Acry_2608	-	phenylacetate-CoA oxygenase subunit PaaA
2571	 71.88	0	2863171..2863458	+	95	148261592	-	Acry_2609	-	phenylacetate-CoA oxygenase subunit PaaB
2572	 72.96	0	2863455..2864264	+	269	148261593	-	Acry_2610	-	phenylacetate-CoA oxygenase, PaaI subunit
2573	 73.98	+1	2864261..2864752	+	163	148261594	-	Acry_2611	-	phenylacetate-CoA oxygenase, PaaJ subunit
2574	 73.65	+1	2864743..2865831	+	362	148261595	-	Acry_2612	-	phenylacetate-CoA oxygenase/reductase, PaaK subunit
2575	 70.52	0	2865839..2866279	-	146	148261596	-	Acry_2613	-	hypothetical protein
2576	 70.60	0	2866276..2866911	-	211	148261597	-	Acry_2614	-	hypothetical protein
2577	 69.61	0	2867043..2868332	+	429	148261598	-	Acry_2615	-	C4-dicarboxylate transporter/malic acid transport protein
2578	 70.46	0	2868501..2869502	+	333	148261599	-	Acry_2616	-	dihydroxyacetone kinase, DhaK subunit
2579	 76.70	+1	2869524..2870141	+	205	148261600	-	Acry_2617	-	dihydroxyacetone kinase, L subunit
2580	 77.39	+1	2870163..2872409	+	748	148261601	-	Acry_2618	-	dihydroxyacetone kinase, phosphotransfer subunit
2581	 64.14	0	2872485..2873867	-	460	148261602	-	Acry_2619	-	hypothetical protein
2582	 75.54	+1	2874151..2875683	-	510	148261603	-	Acry_2620	-	Mg chelatase, subunit ChlI
2583	 70.58	0	2875680..2876420	-	246	148261604	-	Acry_2621	-	DNA repair protein RadC
2584	 66.38	0	2876667..2877017	+	116	148261605	-	Acry_2622	-	endoribonuclease L-PSP
2585	 66.33	0	2877351..2878238	+	295	148261606	-	Acry_2623	-	CHAP domain-containing protein
2586	 74.73	+1	2878251..2879069	-	272	148261607	-	Acry_2624	-	dimethyladenosine transferase
2587	 69.94	0	2879066..2880349	-	427	148261608	-	Acry_2625	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2588	 67.07	0	2880346..2882586	-	746	148261609	-	Acry_2626	-	organic solvent tolerance protein
2589	 71.88	0	2882590..2883720	-	376	148261610	-	Acry_2627	-	permease YjgP/YjgQ family protein
2590	 70.63	0	2883717..2884877	-	386	148261611	-	Acry_2628	-	permease YjgP/YjgQ family protein
2591	 73.42	+1	2884879..2885604	-	241	148261612	-	Acry_2629	-	pyridoxal phosphate biosynthetic protein PdxJ
2592	 74.23	+1	2885601..2886578	-	325	148261613	-	Acry_2630	-	4-hydroxythreonine-4-phosphate dehydrogenase
2593	 68.62	0	2886583..2887248	-	221	148261614	-	Acry_2631	-	hypothetical protein
2594	 67.53	0	2887319..2887780	-	153	148261615	-	Acry_2632	-	heat shock protein Hsp20
2595	 61.40	-1	2887983..2888210	-	75	148261616	rpmE	Acry_2633	-	50S ribosomal protein L31
2596	 72.64	0	2888321..2888956	+	211	148261617	-	Acry_2634	-	methyltransferase type 11
2597	 74.76	+1	2888940..2889569	-	209	148261618	-	Acry_2635	-	DNA-3-methyladenine glycosylase II
2598	 71.07	0	2889580..2890170	-	196	148261619	-	Acry_2636	-	hypothetical protein
2599	 77.88	+1	2890212..2892254	-	680	148261620	-	Acry_2637	-	hypothetical protein
2600	 68.42	0	2892448..2892675	+	75	148261621	-	Acry_2638	-	hypothetical protein
2601	 72.43	0	2892747..2894324	+	525	148261622	-	Acry_2639	-	DEAD/DEAH box helicase domain-containing protein
2602	 74.32	+1	2894268..2896241	-	657	148261623	-	Acry_2640	-	Fis family GAF modulated sigma54 specific transcriptional regulator
2603	 67.43	0	2896379..2897422	+	347	148261624	-	Acry_2641	-	alcohol dehydrogenase
2604	 62.64	-1	2897483..2898499	+	338	148261625	-	Acry_2642	-	amidohydrolase 2
2605	 70.04	0	2898505..2899275	+	256	148261626	-	Acry_2643	-	hypothetical protein
2606	 74.33	+1	2899257..2900195	-	312	148261627	-	Acry_2644	-	DMSO reductase anchor subunit (DmsC)
2607	 67.88	0	2900192..2900935	-	247	148261628	-	Acry_2645	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2608	 68.73	0	2900932..2903739	-	935	148261629	-	Acry_2646	-	molybdopterin oxidoreductase Fe4S4 region
2609	 73.76	+1	2903815..2905251	-	478	148261630	-	Acry_2647	-	pyridoxal-dependent decarboxylase
2610	 67.30	0	2905350..2908499	-	1049	148261631	-	Acry_2648	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
2611	 69.93	0	2908504..2909667	-	387	148261632	-	Acry_2649	-	RND family efflux transporter MFP subunit
2612	 67.80	0	2909881..2911467	-	528	148261633	-	Acry_2650	-	D-3-phosphoglycerate dehydrogenase
2613	 69.94	0	2911471..2912661	-	396	148261634	-	Acry_2651	-	phosphoserine aminotransferase
2614	 72.58	0	2912766..2913509	-	247	148261635	-	Acry_2652	-	hemolysin A
2615	 67.57	0	2913517..2913849	-	110	148261636	-	Acry_2653	-	XRE family transcriptional regulator
2616	 77.80	+1	2914129..2915376	-	415	148261637	-	Acry_2654	-	Fmu (Sun) domain-containing protein
2617	 62.75	-1	2915602..2915907	+	101	148261638	-	Acry_2655	-	protein of unknown function YGGT
2618	 75.95	+1	2915916..2916755	+	279	148261639	-	Acry_2656	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
2619	 74.98	+1	2916855..2918309	-	484	148261640	-	Acry_2657	-	lytic transglycosylase, catalytic
2620	 80.95	+2	2918402..2918737	+	111	148261641	-	Acry_2658	-	hypothetical protein
2621	 73.98	+1	2918822..2919805	+	327	148261642	-	Acry_2659	-	aldo/keto reductase
2622	 70.11	0	2919875..2920513	-	212	148261643	-	Acry_2660	-	GTP cyclohydrolase I
2623	 68.35	0	2920614..2921087	-	157	148261644	apaG	Acry_2661	-	ApaG
2624	 76.70	+1	2921173..2922846	+	557	148261645	-	Acry_2662	-	tetratricopeptide domain-containing protein
2625	 77.25	+1	2922857..2923735	+	292	148261646	-	Acry_2663	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2626	 70.40	0	2923803..2924498	+	231	148261647	-	Acry_2664	-	phosphoribosylformylglycinamidine synthase I
2627	 70.92	0	2924495..2926678	+	727	148261648	-	Acry_2665	-	phosphoribosylformylglycinamidine synthase II
2628	 69.23	0	2926697..2926930	+	77	148261649	-	Acry_2666	-	BolA family protein
2629	 64.08	0	2926964..2927311	+	115	148261650	-	Acry_2667	-	glutaredoxin-like protein
2630	 77.00	+1	2927362..2928561	+	399	148261651	-	Acry_2668	-	hypothetical protein
2631	 70.30	0	2928567..2932061	-	1164	148261652	-	Acry_2669	-	pyruvate carboxylase
2632	 71.45	0	2932174..2933844	+	556	148261653	-	Acry_2670	-	amine oxidase
2633	 68.20	0	2933953..2934606	+	217	148261654	-	Acry_2671	-	multiple antibiotic resistance (MarC)-related protein
2634	 49.44	-2	2934850..2935470	-	206	148261655	-	Acry_2672	-	hypothetical protein
2635	 38.89	-2	2935481..2935696	+	71	148261656	-	Acry_2673	-	hypothetical protein
2636	 76.60	+1	2935866..2936570	-	234	148261657	-	Acry_2674	-	hypothetical protein
2637	 71.99	0	2936632..2937966	-	444	148261658	gltX	Acry_2675	-	glutamyl-tRNA synthetase
2638	 69.52	0	2938058..2939248	+	396	148261659	-	Acry_2676	-	major facilitator transporter
2639	 72.67	0	2939309..2939758	+	149	148261660	-	Acry_2677	-	manganese transport regulator MntR
2640	 72.81	0	2939903..2940358	+	151	148261661	-	Acry_2678	-	hypothetical protein
2641	 73.18	0	2940374..2941432	-	352	148261662	-	Acry_2679	-	hypothetical protein
2642	 74.28	+1	2941441..2941716	-	91	148261663	-	Acry_2680	-	acylphosphatase
2643	 77.07	+1	2941713..2942414	-	233	148261664	-	Acry_2681	-	ATP12 ATPase
2644	 74.44	+1	2942425..2945112	-	895	148261665	-	Acry_2682	-	AsmA family protein
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.