IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2231	 65.81	0	2497994..2498344	+	116	148261252	-	Acry_2265	-	phosphoribosyl-AMP cyclohydrolase
2232	 63.71	0	2498489..2498860	-	123	148261253	-	Acry_2266	-	iron-sulfur cluster assembly accessory protein
2233	 66.94	0	2498871..2499236	-	121	148261254	-	Acry_2267	-	hypothetical protein
2234	 72.59	0	2499226..2499681	-	151	148261255	-	Acry_2268	-	NifU family SUF system FeS assembly protein
2235	 69.08	0	2499678..2500922	-	414	148261256	-	Acry_2269	-	SufS subfamily cysteine desulfurase
2236	 72.58	0	2500919..2502118	-	399	148261257	-	Acry_2270	-	FeS assembly protein SufD
2237	 66.53	0	2502115..2502858	-	247	148261258	-	Acry_2271	-	FeS assembly ATPase SufC
2238	 63.71	0	2502868..2504319	-	483	148261259	-	Acry_2272	-	cysteine desulfurase activator complex subunit SufB
2239	 68.37	0	2504499..2504792	-	97	148261260	-	Acry_2273	-	BadM/Rrf2 family transcriptional regulator
2240	 68.82	0	2504917..2505567	-	216	148261261	-	Acry_2274	-	phosphoglycolate phosphatase
2241	 72.37	0	2505640..2506953	+	437	148261262	-	Acry_2275	-	nucleotidyl transferase
2242	 67.98	0	2506953..2508776	+	607	148261263	-	Acry_2276	-	D-fructose-6-phosphate amidotransferase
2243	 61.60	-1	2508851..2509501	-	216	148261264	-	Acry_2277	-	hypothetical protein
2244	 70.30	0	2509554..2509718	+	54	148261265	-	Acry_2278	-	hypothetical protein
2245	 62.67	-1	2509890..2510189	-	99	148261266	-	Acry_2279	-	hypothetical protein
2246	 78.12	+1	2510365..2510853	-	162	148261267	-	Acry_2280	-	bacteriochlorophyll 4-vinyl reductase
2247	 65.58	0	2510964..2512526	-	520	148261268	-	Acry_2281	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
2248	 66.99	0	2512789..2513097	-	102	148261269	-	Acry_2282	-	hypothetical protein
2249	 60.56	-1	2513175..2513567	+	130	148261270	-	Acry_2283	-	hypothetical protein
2250	 67.35	0	2513607..2514044	+	145	148261271	-	Acry_2284	-	hypothetical protein
2251	 67.86	0	2514351..2515106	-	251	148261272	-	Acry_2285	-	HpcH/HpaI aldolase
2252	 67.69	0	2515183..2515863	+	226	148261273	-	Acry_2286	-	pyrrolidone-carboxylate peptidase
2253	 65.71	0	2516160..2516996	-	278	148261274	-	Acry_2287	-	alpha/beta hydrolase fold
2254	 65.58	0	2517021..2518955	-	644	148261275	-	Acry_2288	-	acetate--CoA ligase
2255	 67.94	0	2519040..2521313	-	757	148261276	-	Acry_2289	-	malic enzyme
2256	 70.31	0	2521571..2522257	+	228	148261277	-	Acry_2290	-	lipoate-protein ligase B
2257	 69.60	0	2522262..2523728	-	488	148261278	-	Acry_2291	-	polysaccharide biosynthesis protein
2258	 71.11	0	2524519..2524788	-	89	148261279	-	Acry_2292	-	hypothetical protein
2259	 58.24	-1	2525298..2525558	+	86	148261280	-	Acry_2293	-	hypothetical protein
2260	 59.88	-1	2525578..2525901	-	107	148261281	-	Acry_2294	-	hypothetical protein
2261	 68.20	0	2526379..2526639	-	86	148261282	-	Acry_2295	-	hypothetical protein
2262	 65.96	0	2526743..2528584	-	613	148261283	-	Acry_2296	-	hypothetical protein
2263	 67.32	0	2528675..2528980	-	101	148261284	-	Acry_2297	-	hypothetical protein
2264	 69.60	0	2528977..2529624	-	215	148261285	-	Acry_2298	-	hypothetical protein
2265	 64.23	0	2529636..2529881	-	81	148261286	-	Acry_2299	-	hypothetical protein
2266	 69.41	0	2530195..2530668	-	157	148261287	-	Acry_2300	-	hypothetical protein
2267	 63.54	0	2530665..2532038	-	457	148261288	-	Acry_2301	-	hypothetical protein
2268	 63.59	0	2532686..2533432	-	248	148261289	-	Acry_2302	-	IstB ATP binding domain-containing protein
2269	 67.31	0	2533450..2534997	-	515	148261290	-	Acry_2303	-	integrase catalytic subunit
2270	 66.46	0	2535115..2535591	-	158	148261291	-	Acry_2304	-	hypothetical protein
2271	 63.91	0	2535591..2536025	-	144	148261292	-	Acry_2305	-	hypothetical protein
2272	 56.33	-2	2536284..2536931	-	215	148261293	-	Acry_2306	-	hypothetical protein
2273	 65.48	0	2537128..2537379	-	83	148261294	-	Acry_2307	-	hypothetical protein
2274	 63.95	0	2537376..2537780	-	134	148261295	-	Acry_2308	-	hypothetical protein
2275	 64.64	0	2538067..2539299	-	410	148261296	-	Acry_2309	-	phage integrase family protein
2276	 66.91	0	2539799..2540605	+	268	148261297	-	Acry_2310	-	hypothetical protein
2277	 64.72	0	2540505..2541326	-	273	148261298	-	Acry_2311	-	transposase
2278	 66.92	0	2541879..2542673	-	264	148261299	-	Acry_2313	-	myo-inositol catabolism IolB domain-containing protein
2279	 68.62	0	2542705..2544543	-	612	148261300	-	Acry_2314	-	thiamine pyrophosphate enzyme, central region
2280	 66.35	0	2544540..2546450	-	636	148261301	-	Acry_2315	-	ribokinase-like domain-containing protein
2281	 66.79	0	2546519..2547322	-	267	148261302	-	Acry_2316	-	ABC transporter related
2282	 64.51	0	2547324..2548391	-	355	148261303	-	Acry_2317	-	inner-membrane translocator
2283	 63.24	0	2548472..2549434	-	320	148261304	-	Acry_2318	-	ABC-type sugar transport system periplasmic component-like protein
2284	 61.72	-1	2549599..2550387	-	262	148261305	-	Acry_2319	-	xylose isomerase domain-containing protein
2285	 62.91	-1	2550396..2551406	-	336	148261306	-	Acry_2320	-	inositol 2-dehydrogenase
2286	 60.85	-1	2551408..2552370	-	320	148261307	-	Acry_2321	-	xylose isomerase domain-containing protein
2287	 61.45	-1	2552446..2553519	+	357	148261308	-	Acry_2322	-	regulatory protein, LacI
2288	 58.00	-2	2553835..2553984	+	49	148261309	-	Acry_2323	-	hypothetical protein
2289	 63.71	0	2554047..2554859	-	270	148261310	-	Acry_2324	-	short chain dehydrogenase
2290	 63.71	0	2554856..2555767	-	303	148261311	-	Acry_2325	-	xylose isomerase domain-containing protein
2291	 64.02	0	2555881..2556825	-	314	148261312	-	Acry_2326	-	RpiR family transcriptional regulator
2292	 65.40	0	2557149..2557940	+	263	148261313	-	Acry_2327	-	HpcH/HpaI aldolase
2293	 68.69	0	2557942..2558928	+	328	148261314	-	Acry_2328	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2294	 68.28	0	2558999..2559991	+	330	148261315	-	Acry_2329	-	inositol 2-dehydrogenase
2295	 67.29	0	2559996..2561117	+	373	148261316	-	Acry_2330	-	oxidoreductase domain-containing protein
2296	 64.85	0	2561181..2561345	-	54	148261317	-	Acry_2331	-	hypothetical protein
2297	 64.98	0	2561466..2563892	-	808	148261318	-	Acry_2332	-	hypothetical protein
2298	 63.97	0	2563912..2565471	-	519	148261319	-	Acry_2333	-	NADH dehydrogenase (quinone)
2299	 59.36	-1	2565579..2566454	+	291	148261320	-	Acry_2334	-	LysR family transcriptional regulator
2300	 75.19	+1	2566986..2567243	+	85	148261321	-	Acry_2335	-	hypothetical protein
2301	 73.43	+1	2567305..2567925	+	206	148261322	-	Acry_2336	-	RNA polymerase sigma factor
2302	 78.55	+2	2567922..2568350	+	142	148261323	-	Acry_2337	-	hypothetical protein
2303	 74.81	+1	2568347..2568886	+	179	148261324	-	Acry_2338	-	integral membrane protein-like protein
2304	 73.10	0	2569303..2570871	+	522	148261325	-	Acry_2339	-	hypothetical protein
2305	 74.55	+1	2570877..2572094	+	405	148261326	-	Acry_2340	-	hypothetical protein
2306	 70.54	0	2572154..2572798	+	214	148261327	-	Acry_2341	-	DNA photolyase domain-containing protein
2307	 66.51	0	2572946..2574199	+	417	148261328	-	Acry_2342	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2308	 72.48	0	2574218..2575387	+	389	148261329	-	Acry_2343	-	deoxyribodipyrimidine photo-lyase
2309	 66.90	0	2575415..2575840	+	141	148261330	-	Acry_2344	-	hypothetical protein
2310	 68.96	0	2575833..2577008	+	391	148261331	-	Acry_2345	-	hypothetical protein
2311	 69.24	0	2577008..2578132	+	374	148261332	-	Acry_2346	-	hypothetical protein
2312	 67.90	0	2578333..2578656	+	107	148261333	-	Acry_2347	-	hypothetical protein
2313	 65.01	0	2578862..2579767	+	301	148261334	-	Acry_2348	-	phage integrase family protein
2314	 67.00	0	2579772..2580965	+	397	148261335	-	Acry_2349	-	putative transposase
2315	 60.00	-1	2581573..2582007	-	144	148261336	-	Acry_2350	-	globin
2316	 63.48	0	2582028..2583062	-	344	148261337	-	Acry_2351	-	hypothetical protein
2317	 65.19	0	2583946..2585640	+	564	148261338	-	Acry_2352	-	resolvase domain-containing protein
2318	 59.14	-1	2591485..2592441	-	318	148261339	-	Acry_2353	-	NAD-dependent epimerase/dehydratase
2319	 66.33	0	2592450..2593049	-	199	148261340	-	Acry_2354	-	phosphoheptose isomerase
2320	 62.98	-1	2593039..2593905	-	288	148261341	-	Acry_2355	-	3-hydroxybutyrate dehydrogenase
2321	 60.70	-1	2594160..2594444	+	94	148261342	-	Acry_2356	-	hypothetical protein
2322	 69.54	0	2594673..2595263	-	196	148261343	-	Acry_2357	-	SOUL heme-binding protein
2323	 62.57	-1	2595950..2596657	+	235	148261344	-	Acry_2358	-	transposase, IS4 family protein
2324	 70.27	0	2596666..2597304	-	212	148261345	-	Acry_2359	-	hypothetical protein
2325	 74.31	+1	2597423..2597893	-	156	148261346	-	Acry_2360	-	ferric uptake regulator family protein
2326	 67.70	0	2598015..2599667	+	550	148261347	-	Acry_2361	-	AMP-dependent synthetase and ligase
2327	 72.60	0	2599785..2600963	+	392	148261348	-	Acry_2362	-	major facilitator transporter
2328	 71.41	0	2600973..2601962	-	329	148261349	-	Acry_2363	-	alcohol dehydrogenase
2329	 68.90	0	2602044..2603831	-	595	148261350	aspS	Acry_2364	-	aspartyl-tRNA synthetase
2330	 72.52	0	2603916..2605094	+	392	148261351	-	Acry_2365	-	ribonuclease D
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.