IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
171	 71.65	0	198171..198752	+	193	148259192	-	Acry_0172	-	hypothetical protein
172	 64.47	0	198903..199997	+	364	148259193	-	Acry_0173	-	OmpA/MotB domain-containing protein
173	 66.11	0	200253..201338	+	361	148259194	-	Acry_0174	-	OmpA/MotB domain-containing protein
174	 71.22	0	201391..202158	-	255	148259195	-	Acry_0175	-	protein tyrosine/serine phosphatase
175	 64.24	0	202166..202660	-	164	148259196	-	Acry_0176	-	hypothetical protein
176	 63.14	0	202767..203078	-	103	148259197	-	Acry_0177	-	ethyl tert-butyl ether degradation EthD
177	 70.25	0	203141..204565	-	474	148259198	-	Acry_0178	-	pyruvate kinase
178	 66.35	0	204710..205024	+	104	148259199	-	Acry_0179	-	hypothetical protein
179	 64.49	0	205082..205357	+	91	148259200	-	Acry_0180	-	hypothetical protein
180	 68.78	0	205407..206402	-	331	148259201	-	Acry_0181	-	delta-aminolevulinic acid dehydratase
181	 70.39	0	206484..207557	-	357	148259202	-	Acry_0182	-	tartrate dehydrogenase
182	 69.92	0	207590..209005	+	471	148259203	-	Acry_0183	-	membrane protein-like protein
183	 74.44	+1	209070..209957	+	295	148259204	-	Acry_0184	-	CHAD domain-containing protein
184	 68.90	0	210057..212342	+	761	148259205	-	Acry_0185	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
185	 70.34	0	212360..213367	-	335	148259206	-	Acry_0186	-	alanine racemase
186	 72.71	0	213562..216075	+	837	148259207	-	Acry_0187	-	phosphoenolpyruvate-protein phosphotransferase
187	 73.48	+1	216072..217025	+	317	148259208	-	Acry_0188	-	1-phosphofructokinase
188	 69.62	0	217022..218716	+	564	148259209	-	Acry_0189	-	PTS system, fructose subfamily, IIC subunit
189	 68.93	0	218787..219227	+	146	148259210	-	Acry_0190	-	thioesterase superfamily protein
190	 71.35	0	219239..220156	+	305	148259211	-	Acry_0191	-	2-dehydropantoate 2-reductase
191	 74.06	+1	220129..220764	-	211	148259212	-	Acry_0192	-	hypothetical protein
192	 71.91	0	220749..222866	-	705	148259213	-	Acry_0193	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
193	 70.57	0	222874..224613	-	579	148259214	-	Acry_0194	-	radical SAM domain-containing protein
194	 71.46	0	224624..226021	-	465	148259215	-	Acry_0195	-	major facilitator transporter
195	 69.70	0	226341..227264	+	307	148259216	-	Acry_0196	-	dihydrodipicolinate synthetase
196	 72.15	0	227261..228829	+	522	148259217	-	Acry_0197	-	aldehyde dehydrogenase
197	 68.49	0	228858..229571	-	237	148259218	-	Acry_0198	-	hypothetical protein
198	 66.09	0	230055..230918	+	287	148259219	-	Acry_0199	-	peptidase M48, Ste24p
199	 65.35	0	231000..231530	-	176	148259220	-	Acry_0200	-	heat shock protein Hsp20
200	 70.85	0	231784..233073	-	429	148259221	-	Acry_0201	-	hypothetical protein
201	 66.99	0	233060..234001	-	313	148259222	-	Acry_0202	-	hypothetical protein
202	 65.31	0	234071..234883	+	270	148259223	-	Acry_0203	-	hypothetical protein
203	 69.96	0	235043..236467	+	474	148259224	-	Acry_0204	-	response regulator receiver protein
204	 69.67	0	236467..237831	+	454	148259225	-	Acry_0205	-	glycosyl transferase, group 1
205	 68.58	0	237828..239027	+	399	148259226	-	Acry_0206	-	glycosyl transferase, group 1
206	 70.59	0	239024..240832	+	602	148259227	-	Acry_0207	-	ABC transporter related
207	 67.85	0	240829..241671	+	280	148259228	-	Acry_0208	-	hypothetical protein
208	 72.30	0	241628..242284	+	218	148259229	-	Acry_0209	-	phosphoglycerate mutase
209	 71.73	0	242289..243650	+	453	148259230	-	Acry_0210	-	UDP-glucose 6-dehydrogenase
210	 72.51	0	243647..244348	-	233	148259231	-	Acry_0211	-	short-chain dehydrogenase/reductase SDR
211	 66.03	0	244450..247137	-	895	148259232	-	Acry_0212	-	aconitate hydratase
212	 69.26	0	247168..247860	+	230	148259233	-	Acry_0213	-	heme exporter protein CcmA
213	 69.88	0	247857..248510	+	217	148259234	-	Acry_0214	-	cytochrome c-type biogenesis protein CcmB
214	 69.77	0	248503..250272	-	589	148259235	-	Acry_0215	-	peptidase M24
215	 65.93	0	250436..250705	+	89	148259236	-	Acry_0216	-	hypothetical protein
216	 71.68	0	250751..251668	-	305	148259237	-	Acry_0217	-	ribosomal L11 methyltransferase
217	 68.54	0	251668..253854	-	728	148259238	-	Acry_0218	-	UvrD/REP helicase
218	 69.45	0	253851..254783	-	310	148259239	-	Acry_0219	-	5,10-methylenetetrahydrofolate reductase
219	 61.86	-1	254938..255810	+	290	148259240	-	Acry_0220	-	VacJ family lipoprotein
220	 63.80	0	255848..256474	+	208	148259241	-	Acry_0221	-	toluene tolerance family protein
221	 65.51	0	256531..257136	+	201	148259242	-	Acry_0222	-	hypothetical protein
222	 65.55	0	257162..258682	+	506	148259243	nusA	Acry_0223	-	transcription elongation factor NusA
223	 65.99	0	258675..259415	+	246	148259244	-	Acry_0224	-	hypothetical protein
224	 69.22	0	259432..262095	+	887	148259245	infB	Acry_0225	-	translation initiation factor IF-2
225	 63.36	0	262065..262487	+	140	148259246	rbfA	Acry_0226	-	ribosome-binding factor A
226	 69.35	0	262484..263452	+	322	148259247	-	Acry_0227	-	Sua5/YciO/YrdC/YwlC family protein
227	 62.57	-1	263478..266747	-	1089	148259248	-	Acry_0228	-	glycosyl transferase, group 1
228	 53.69	-2	267076..268038	-	320	148259249	-	Acry_0229	-	FkbM family methyltransferase
229	 60.49	-1	268531..268935	-	134	148259250	-	Acry_0230	-	ribose/xylose/arabinose/galactoside ABC-type transporter permease
230	 64.76	0	269405..269719	+	104	148259251	rplU	Acry_0231	-	50S ribosomal protein L21
231	 67.04	0	269735..270004	+	89	148259252	rpmA	Acry_0232	-	50S ribosomal protein L27
232	 68.07	0	270067..271065	+	332	148259253	obgE	Acry_0233	-	GTPase ObgE
233	 72.92	0	271062..272213	+	383	148259254	-	Acry_0234	-	gamma-glutamyl kinase
234	 68.56	0	272229..273335	-	368	148259255	-	Acry_0235	-	MscS mechanosensitive ion channel
235	 65.12	0	273456..273971	-	171	148259256	-	Acry_0236	-	hypothetical protein
236	 68.06	0	274069..274857	-	262	148259257	-	Acry_0237	-	arginyl-tRNA-protein transferase
237	 69.70	0	274854..275348	-	164	148259258	-	Acry_0238	-	RDD domain-containing protein
238	 65.81	0	275507..276439	+	310	148259259	-	Acry_0239	-	ribose-phosphate pyrophosphokinase
239	 67.15	0	276467..277087	+	206	148259260	-	Acry_0240	-	glutathione S-transferase domain-containing protein
240	 73.68	+1	277087..277671	+	194	148259261	-	Acry_0241	-	phosphoglycerate mutase
241	 69.67	0	277718..278881	+	387	148259262	-	Acry_0242	-	iron-containing alcohol dehydrogenase
242	 72.31	0	278928..280097	-	389	148259263	-	Acry_0243	-	amidase
243	 65.19	0	280204..281154	+	316	148259264	-	Acry_0244	-	hypothetical protein
244	 72.87	0	281151..282005	+	284	148259265	-	Acry_0245	-	methyltransferase type 11
245	 63.89	0	282357..284444	-	695	148259266	-	Acry_0246	-	translation elongation factor G
246	 71.63	0	284643..284924	-	93	148259267	-	Acry_0247	-	hypothetical protein
247	 68.47	0	284993..286264	-	423	148259268	-	Acry_0248	-	Serine-type D-Ala-D-Ala carboxypeptidase
248	 62.58	-1	286395..287153	+	252	148259269	-	Acry_0249	-	signal peptidase I
249	 72.22	0	287150..287815	+	221	148259270	-	Acry_0250	-	ribonuclease III
250	 69.37	0	287812..288699	+	295	148259271	era	Acry_0251	-	GTP-binding protein Era
251	 68.01	0	288738..289856	-	372	148259272	-	Acry_0252	-	acyl-CoA dehydrogenase domain-containing protein
252	 65.02	0	289867..291078	-	403	148259273	-	Acry_0253	-	acyl-CoA dehydrogenase domain-containing protein
253	 67.55	0	291181..292884	-	567	148259274	-	Acry_0254	-	AMP-dependent synthetase and ligase
254	 69.72	0	292881..294977	-	698	148259275	-	Acry_0255	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
255	 75.38	+1	295076..296074	-	332	148259276	-	Acry_0256	-	ABC-type Fe3+ transport system periplasmic component-like protein
256	 70.31	0	296074..297447	-	457	148259277	-	Acry_0257	-	TPR repeat-containing protein
257	 75.23	+1	297444..299324	-	626	148259278	-	Acry_0258	-	sulfotransferase
258	 67.71	0	299456..300412	+	318	148259279	-	Acry_0259	-	rubrerythrin
259	 68.65	0	300444..301400	+	318	148259280	-	Acry_0260	-	2-nitropropane dioxygenase, NPD
260	 67.42	0	301408..302073	-	221	148259281	-	Acry_0261	-	glutathione S-transferase domain-containing protein
261	 72.46	0	302070..302897	-	275	148259282	-	Acry_0262	-	glycine cleavage T-protein, C-terminal barrel
262	 75.25	+1	302946..303842	+	298	148259283	-	Acry_0263	-	glycosyl transferase family protein
263	 73.68	+1	303839..304864	+	341	148259284	-	Acry_0264	-	phosphatidylserine decarboxylase
264	 73.37	+1	304864..306609	+	581	148259285	-	Acry_0265	-	asparagine synthase (glutamine-hydrolyzing)
265	 71.11	0	306606..307934	+	442	148259286	-	Acry_0266	-	dihydroorotase
266	 69.71	0	308584..309174	-	196	148259287	-	Acry_0267	-	MerR family transcriptional regulator
267	 65.40	0	309171..309485	-	104	148259288	-	Acry_0268	-	integration host factor, alpha subunit
268	 70.30	0	309567..310529	-	320	148259289	-	Acry_0269	-	3-oxoacyl-(acyl-carrier-protein) synthase III
269	 70.43	0	310535..311677	-	380	148259290	-	Acry_0270	-	putative glycerol-3-phosphate acyltransferase PlsX
270	 66.67	0	311765..311968	-	67	148259291	rpmF	Acry_0271	-	50S ribosomal protein L32
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.