IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1936	 68.63	0	2153732..2155057	+	441	148260957	-	Acry_1964	-	beta alanine--pyruvate transaminase
1937	 68.90	0	2155095..2156525	+	476	148260958	-	Acry_1965	-	aldehyde dehydrogenase
1938	 69.05	0	2156548..2157345	-	265	148260959	-	Acry_1966	-	peptidase S49
1939	 73.00	0	2157342..2157767	-	141	148260960	-	Acry_1967	-	hypothetical protein
1940	 69.65	0	2157764..2160076	-	770	148260961	-	Acry_1968	-	carbon-monoxide dehydrogenase (acceptor)
1941	 72.68	0	2160227..2160925	+	232	148260962	-	Acry_1969	-	anti-ECFsigma factor, ChrR
1942	 75.87	+1	2160930..2162027	+	365	148260963	-	Acry_1970	-	amine oxidase
1943	 67.16	0	2162024..2163232	-	402	148260964	-	Acry_1971	-	monosaccharide-transporting ATPase
1944	 68.52	0	2163229..2164038	-	269	148260965	-	Acry_1972	-	ABC transporter related
1945	 65.14	0	2164103..2165212	-	369	148260966	-	Acry_1973	-	monosaccharide-transporting ATPase
1946	 63.75	0	2165377..2165616	-	79	148260967	-	Acry_1974	-	hypothetical protein
1947	 68.48	0	2165665..2167488	-	607	148260968	-	Acry_1975	-	ABC transporter related
1948	 69.76	0	2167490..2168428	+	312	148260969	-	Acry_1976	-	NUDIX hydrolase
1949	 66.07	0	2168450..2169118	-	222	148260970	-	Acry_1977	-	glutathione S-transferase domain-containing protein
1950	 66.03	0	2169300..2170550	+	416	148260971	-	Acry_1978	-	oxidoreductase, molybdopterin binding
1951	 63.82	0	2170567..2170917	+	116	148260972	-	Acry_1979	-	hypothetical protein
1952	 69.81	0	2170924..2172735	-	603	148260973	-	Acry_1980	-	sodium/hydrogen exchanger
1953	 70.49	0	2172952..2174337	+	461	148260974	-	Acry_1981	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
1954	 68.30	0	2174386..2175792	+	468	148260975	-	Acry_1982	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1955	 68.32	0	2175793..2176944	+	383	148260976	-	Acry_1983	-	nicotinic acid phosphoribosyltransferase-like protein
1956	 66.38	0	2176966..2177313	-	115	148260977	-	Acry_1984	-	hypothetical protein
1957	 65.75	0	2177404..2177730	-	108	148260978	-	Acry_1985	-	hypothetical protein
1958	 67.12	0	2177815..2179566	+	583	148260979	nadE	Acry_1986	-	NAD synthetase
1959	 64.07	0	2179567..2181066	-	499	148260980	-	Acry_1987	-	hypothetical protein
1960	 57.78	-2	2181393..2181662	-	89	148260981	-	Acry_1988	-	histone family protein DNA-binding protein
1961	 60.95	-1	2182106..2182717	-	203	148260982	-	Acry_1989	-	hypothetical protein
1962	 61.36	-1	2182912..2183175	-	87	148260983	-	Acry_1990	-	cell division topological specificity factor MinE
1963	 65.07	0	2183172..2183987	-	271	148260984	-	Acry_1991	-	septum site-determining protein MinD
1964	 65.49	0	2183998..2184846	-	282	148260985	minC	Acry_1992	-	septum formation inhibitor
1965	 68.30	0	2184901..2185881	-	326	148260986	-	Acry_1993	-	oxidoreductase domain-containing protein
1966	 66.88	0	2188624..2189094	+	156	148260987	-	Acry_1995	-	hypothetical protein
1967	 67.50	0	2189098..2189814	-	238	148260988	-	Acry_1996	-	GDSL family lipase
1968	 62.51	-1	2189792..2190898	-	368	148260989	-	Acry_1997	-	hypothetical protein
1969	 69.54	0	2190895..2191485	-	196	148260990	-	Acry_1998	-	recombination protein RecR
1970	 63.27	0	2191511..2191834	-	107	148260991	-	Acry_1999	-	hypothetical protein
1971	 70.73	0	2191834..2193678	-	614	148260992	-	Acry_2000	-	DNA polymerase III subunits gamma and tau
1972	 68.97	0	2193886..2194797	+	303	148260993	-	Acry_2001	-	NUDIX hydrolase
1973	 65.67	0	2194887..2195486	+	199	148260994	-	Acry_2002	-	flavoprotein WrbA
1974	 63.33	0	2195597..2196526	+	309	148260995	-	Acry_2003	-	acid phosphatase
1975	 70.34	0	2196545..2198557	-	670	148260996	-	Acry_2004	-	hypothetical protein
1976	 71.26	0	2198554..2201232	-	892	148260997	-	Acry_2005	-	hypothetical protein
1977	 72.57	0	2201229..2202092	-	287	148260998	-	Acry_2006	-	hypothetical protein
1978	 68.60	0	2202073..2203161	-	362	148260999	-	Acry_2007	-	ATPase
1979	 66.97	0	2203188..2203856	+	222	148261000	-	Acry_2008	-	hypothetical protein
1980	 71.38	0	2203861..2204454	+	197	148261001	-	Acry_2009	-	NUDIX hydrolase
1981	 69.66	0	2204548..2205717	+	389	148261002	-	Acry_2010	-	polynucleotide adenylyltransferase region
1982	 66.08	0	2205696..2206373	-	225	148261003	-	Acry_2011	-	ribosomal RNA methyltransferase RrmJ/FtsJ
1983	 67.95	0	2206370..2207464	-	364	148261004	-	Acry_2012	-	Ppx/GppA phosphatase
1984	 64.82	0	2208055..2210439	+	794	148261005	-	Acry_2013	-	pyruvate dehydrogenase (acetyl-transferring)
1985	 62.50	-1	2210464..2211063	-	199	148261006	-	Acry_2014	-	sigma 54 modulation protein/ribosomal protein S30EA
1986	 62.80	-1	2211195..2212667	-	490	148261007	-	Acry_2015	-	RNA polymerase factor sigma-54
1987	 63.42	0	2212790..2213713	-	307	148261008	-	Acry_2016	-	type II secretion system protein
1988	 65.83	0	2213715..2214674	-	319	148261009	-	Acry_2017	-	type II secretion system protein
1989	 63.45	0	2214671..2216008	-	445	148261010	-	Acry_2018	-	type II secretion system protein E
1990	 67.08	0	2216005..2217207	-	400	148261011	-	Acry_2019	-	Flp pilus assembly protein ATPase CpaE-like protein
1991	 66.30	0	2217204..2218031	-	275	148261012	-	Acry_2020	-	SAF domain-containing protein
1992	 55.88	-2	2218196..2218399	-	67	148261013	-	Acry_2021	-	Flp/Fap pilin component
1993	 66.87	0	2218585..2219577	-	330	148261014	-	Acry_2022	-	ribokinase-like domain-containing protein
1994	 70.49	0	2219982..2220452	+	156	148261015	-	Acry_2023	-	hypothetical protein
1995	 67.24	0	2220491..2220838	+	115	148261016	-	Acry_2024	-	hypothetical protein
1996	 65.51	0	2220910..2221863	+	317	148261017	-	Acry_2025	-	glutathione synthetase
1997	 67.53	0	2221867..2222445	+	192	148261018	-	Acry_2026	-	hypothetical protein
1998	 65.12	0	2222456..2223295	-	279	148261019	-	Acry_2027	-	N-acetylmuramoyl-L-alanine amidase
1999	 63.79	0	2223486..2223902	+	138	148261020	-	Acry_2028	-	membrane protein-like protein
2000	 66.46	0	2223909..2225372	-	487	148261021	-	Acry_2029	-	isocitrate dehydrogenase
2001	 66.60	0	2225593..2227140	+	515	148261022	-	Acry_2030	-	EmrB/QacA family drug resistance transporter
2002	 68.79	0	2227160..2227678	-	172	148261023	-	Acry_2031	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2003	 69.77	0	2227785..2228846	+	353	148261024	-	Acry_2032	-	nifR3 family TIM-barrel protein
2004	 68.85	0	2228843..2229988	+	381	148261025	-	Acry_2033	-	signal transduction histidine kinase, nitrogen specific, NtrB
2005	 68.92	0	2229985..2231448	+	487	148261026	-	Acry_2034	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
2006	 67.25	0	2231456..2233678	+	740	148261027	-	Acry_2035	-	multi-sensor signal transduction histidine kinase
2007	 66.24	0	2233686..2235083	+	465	148261028	-	Acry_2036	-	two component, sigma54 specific, Fis family transcriptional regulator
2008	 62.77	-1	2235221..2237686	+	821	148261029	-	Acry_2037	-	TonB-dependent receptor
2009	 66.26	0	2238107..2238592	-	161	148261030	-	Acry_2038	-	single-strand binding protein
2010	 68.91	0	2238718..2239743	-	341	148261031	-	Acry_2039	-	cytochrome d ubiquinol oxidase, subunit II
2011	 68.29	0	2239749..2241167	-	472	148261032	-	Acry_2040	-	cytochrome bd ubiquinol oxidase, subunit I
2012	 67.45	0	2241164..2241805	-	213	148261033	-	Acry_2041	-	transcriptional regulators-like protein
2013	 71.27	0	2241872..2242783	-	303	148261034	-	Acry_2042	-	hypothetical protein
2014	 71.38	0	2242823..2243755	-	310	148261035	-	Acry_2043	-	LysR family transcriptional regulator
2015	 70.47	0	2244079..2246367	+	762	148261036	-	Acry_2044	-	oxidoreductase alpha (molybdopterin) subunit
2016	 71.77	0	2246422..2247498	-	358	148261037	-	Acry_2045	-	methyltransferase type 11
2017	 67.53	0	2247498..2250377	-	959	148261038	uvrA	Acry_2046	-	excinuclease ABC subunit A
2018	 70.45	0	2250443..2250733	+	96	148261039	-	Acry_2047	-	hypothetical protein
2019	 75.62	+1	2250737..2251741	-	334	148261040	holA	Acry_2048	-	DNA polymerase III subunit delta
2020	 68.21	0	2251746..2252264	-	172	148261041	-	Acry_2049	-	secreted (periplasmic) protein-like protein
2021	 69.90	0	2252248..2254842	-	864	148261042	leuS	Acry_2050	-	leucyl-tRNA synthetase
2022	 68.12	0	2254847..2255395	-	182	148261043	-	Acry_2051	-	hypothetical protein
2023	 64.67	0	2255627..2256931	-	434	148261044	-	Acry_2052	-	hypothetical protein
2024	 77.65	+1	2257102..2257611	-	169	148261045	-	Acry_2053	-	thiamine monophosphate synthase
2025	 72.32	0	2257703..2258392	+	229	148261046	-	Acry_2054	-	alanine racemase domain-containing protein
2026	 72.88	0	2258386..2259366	-	326	148261047	-	Acry_2055	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2027	 73.79	+1	2259369..2260646	-	425	148261048	-	Acry_2056	-	hypothetical protein
2028	 75.19	+1	2260735..2262072	+	445	148261049	-	Acry_2057	-	nicotinate phosphoribosyltransferase
2029	 74.40	+1	2262075..2263418	+	447	148261050	-	Acry_2058	-	hypothetical protein
2030	 74.06	+1	2263415..2264374	+	319	148261051	-	Acry_2059	-	ribose-phosphate pyrophosphokinase
2031	 74.67	+1	2264364..2265200	+	278	148261052	-	Acry_2060	-	hypothetical protein
2032	 77.18	+1	2265176..2265841	-	221	148261053	-	Acry_2061	-	phosphoribosyltransferase
2033	 73.02	0	2265852..2266292	-	146	148261054	-	Acry_2062	-	hypothetical protein
2034	 73.53	+1	2266474..2268264	+	596	148261055	-	Acry_2063	-	patatin
2035	 75.00	+1	2268273..2269484	-	403	148261056	-	Acry_2064	-	major facilitator transporter
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.