IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1773	 69.73	0	1983295..1984305	+	336	148260794	-	Acry_1799	-	oxidoreductase FAD-binding subunit
1774	 67.11	0	1984337..1984789	+	150	148260795	-	Acry_1800	-	BadM/Rrf2 family transcriptional regulator
1775	 68.61	0	1984945..1986075	-	376	148260796	-	Acry_1801	-	cellulose biosynthesis protein CelD
1776	 66.57	0	1986113..1987153	+	346	148260797	-	Acry_1802	-	hypothetical protein
1777	 71.22	0	1987153..1988382	+	409	148260798	-	Acry_1803	-	glycosyl transferase, group 1
1778	 72.05	0	1988400..1989440	+	346	148260799	-	Acry_1804	-	hypothetical protein
1779	 72.74	0	1989437..1990555	+	372	148260800	-	Acry_1805	-	glycosyl transferase, group 1
1780	 68.33	0	1990552..1990971	+	139	148260801	-	Acry_1806	-	hypothetical protein
1781	 61.47	-1	1991304..1992266	-	320	148260802	-	Acry_1808	-	CRISPR-associated Cas1 family protein
1782	 63.46	0	1992259..1992945	-	228	148260803	-	Acry_1809	-	CRISPR-associated Cse3 family protein
1783	 65.20	0	1992942..1993691	-	249	148260804	-	Acry_1810	-	CRISPR-associated Cas5 family protein
1784	 63.43	0	1993693..1994805	-	370	148260805	-	Acry_1811	-	CRISPR-associated Cse4 family protein
1785	 65.56	0	1994805..1995344	-	179	148260806	-	Acry_1812	-	hypothetical protein
1786	 61.01	-1	1995341..1996930	-	529	148260807	-	Acry_1813	-	CRISPR-associated Cse1 family protein
1787	 63.11	-1	1997220..1999325	-	701	148260808	-	Acry_1814	-	CRISPR-associated helicase Cas3
1788	 58.58	-1	2000148..2000456	-	102	148260809	-	Acry_1815	-	hypothetical protein
1789	 62.61	-1	2000602..2002374	-	590	148260810	-	Acry_1816	-	ATPase central domain-containing protein
1790	 60.22	-1	2002595..2003308	-	237	148260811	-	Acry_1817	-	hypothetical protein
1791	 51.75	-2	2003548..2003775	+	75	148260812	-	Acry_1818	-	hypothetical protein
1792	 52.06	-2	2003885..2004370	-	161	148260813	-	Acry_1819	-	hypothetical protein
1793	 49.07	-2	2004619..2004942	-	107	148260814	-	Acry_1820	-	hypothetical protein
1794	 57.49	-2	2005182..2005508	-	108	148260815	-	Acry_1821	-	NIPSNAP family protein
1795	 64.53	0	2005755..2007485	+	576	148260816	-	Acry_1822	-	resolvase domain-containing protein
1796	 66.28	0	2013473..2016055	-	860	148260817	-	Acry_1823	-	ATPase
1797	 69.03	0	2016173..2016934	+	253	148260818	-	Acry_1824	-	MOSC domain-containing protein
1798	 67.35	0	2016985..2017569	+	194	148260819	-	Acry_1825	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1799	 67.78	0	2017577..2018116	+	179	148260820	-	Acry_1826	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1800	 69.65	0	2018170..2018940	+	256	148260821	-	Acry_1827	-	hypothetical protein
1801	 60.71	-1	2018972..2019223	+	83	148260822	-	Acry_1828	-	molybdopterin converting factor, subunit 1
1802	 67.76	0	2019220..2019678	+	152	148260823	-	Acry_1829	-	molybdopterin biosynthesis MoaE protein
1803	 53.78	-2	2019963..2020715	+	250	148260824	-	Acry_1830	-	two component transcriptional regulator
1804	 59.20	-1	2020749..2021900	-	383	148260825	-	Acry_1831	-	radical SAM domain-containing protein
1805	 62.50	-1	2021940..2022923	-	327	148260826	-	Acry_1832	-	hydroxymethylbutenyl pyrophosphate reductase
1806	 67.49	0	2023304..2025247	+	647	148260827	-	Acry_1833	-	1-deoxy-D-xylulose-5-phosphate synthase
1807	 62.04	-1	2025244..2025891	+	215	148260828	-	Acry_1834	-	toluene tolerance family protein
1808	 69.26	0	2025893..2027086	+	397	148260829	-	Acry_1835	-	cell wall biosynthesis glycosyltransferase-like protein
1809	 64.28	0	2027097..2028521	+	474	148260830	-	Acry_1836	-	radical SAM domain-containing protein
1810	 68.03	0	2028543..2029346	+	267	148260831	-	Acry_1837	-	YdjC family protein
1811	 59.15	-1	2029506..2031167	+	553	148260832	-	Acry_1838	-	hypothetical protein
1812	 65.77	0	2031312..2031758	-	148	148260833	-	Acry_1839	-	hypothetical protein
1813	 61.86	-1	2031755..2032087	-	110	148260834	-	Acry_1840	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1814	 68.31	0	2032161..2032889	-	242	148260835	-	Acry_1841	-	hypothetical protein
1815	 65.00	0	2032873..2033292	-	139	148260836	-	Acry_1842	-	hypothetical protein
1816	 64.76	0	2033386..2033805	+	139	148260837	-	Acry_1843	-	BadM/Rrf2 family transcriptional regulator
1817	 70.20	0	2033926..2035650	-	574	148260838	-	Acry_1844	-	DEAD/DEAH box helicase domain-containing protein
1818	 71.99	0	2035778..2036434	-	218	148260839	-	Acry_1845	-	3-oxoacid CoA-transferase, B subunit
1819	 71.18	0	2036434..2037120	-	228	148260840	-	Acry_1846	-	3-oxoacid CoA-transferase, A subunit
1820	 73.23	+1	2037125..2038327	-	400	148260841	-	Acry_1847	-	beta-ketoadipyl CoA thiolase
1821	 73.06	0	2038348..2038863	-	171	148260842	-	Acry_1848	-	protocatechuate 3,4-dioxygenase, alpha subunit
1822	 71.06	0	2038873..2039577	-	234	148260843	-	Acry_1849	-	protocatechuate 3,4-dioxygenase, beta subunit
1823	 70.36	0	2039574..2040764	-	396	148260844	-	Acry_1850	-	4-hydroxybenzoate 3-monooxygenase
1824	 69.04	0	2041073..2043259	+	728	148260845	-	Acry_1851	-	catalase/peroxidase HPI
1825	 67.07	0	2043310..2044302	-	330	148260846	-	Acry_1852	-	monosaccharide-transporting ATPase
1826	 65.69	0	2044319..2045338	-	339	148260847	-	Acry_1853	-	periplasmic binding protein/LacI transcriptional regulator
1827	 66.67	0	2045335..2046114	-	259	148260848	-	Acry_1854	-	ABC transporter related
1828	 72.11	0	2046397..2047149	+	250	148260849	-	Acry_1855	-	short chain dehydrogenase
1829	 74.36	+1	2047149..2047967	+	272	148260850	-	Acry_1856	-	amidohydrolase 2
1830	 75.95	+1	2048079..2048972	-	297	148260851	-	Acry_1857	-	ribokinase-like domain-containing protein
1831	 72.93	0	2048972..2050153	-	393	148260852	-	Acry_1858	-	mannonate dehydratase
1832	 74.95	+1	2050174..2051586	-	470	148260853	-	Acry_1859	-	mannitol dehydrogenase domain-containing protein
1833	 70.93	0	2051564..2052337	-	257	148260854	-	Acry_1860	-	short-chain dehydrogenase/reductase SDR
1834	 70.57	0	2052475..2053269	+	264	148260855	-	Acry_1861	-	GntR family transcriptional regulator
1835	 69.08	0	2053266..2054882	+	538	148260856	-	Acry_1862	-	galactarate dehydratase
1836	 68.20	0	2054966..2055682	-	238	148260857	-	Acry_1863	-	ABC transporter related
1837	 64.67	0	2055675..2057474	-	599	148260858	-	Acry_1864	-	ABC transporter related
1838	 63.50	0	2057508..2058392	-	294	148260859	-	Acry_1865	-	inner-membrane translocator
1839	 62.57	-1	2058486..2059607	-	373	148260860	-	Acry_1866	-	extracellular ligand-binding receptor
1840	 72.02	0	2059881..2060552	-	223	148260861	-	Acry_1867	-	dethiobiotin synthase
1841	 72.43	0	2060549..2061694	-	381	148260862	-	Acry_1868	-	8-amino-7-oxononanoate synthase
1842	 68.51	0	2061782..2062759	+	325	148260863	-	Acry_1869	-	biotin synthase
1843	 69.37	0	2062756..2064012	+	418	148260864	-	Acry_1870	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1844	 77.14	+1	2064033..2064605	-	190	148260865	-	Acry_1871	-	hypothetical protein
1845	 73.56	+1	2064736..2065431	-	231	148260866	-	Acry_1872	-	hypothetical protein
1846	 70.97	0	2065607..2066419	-	270	148260867	-	Acry_1873	-	hypothetical protein
1847	 74.11	+1	2066696..2067313	-	205	148260868	-	Acry_1874	-	cytochrome B561
1848	 71.17	0	2067395..2068771	-	458	148260869	-	Acry_1875	-	glutamate--cysteine ligase
1849	 75.17	+1	2068787..2069503	-	238	148260870	-	Acry_1876	-	hypothetical protein
1850	 73.52	+1	2069559..2070419	+	286	148260871	-	Acry_1877	-	4-hydroxybenzoate polyprenyl transferase
1851	 72.71	0	2070416..2071060	+	214	148260872	-	Acry_1878	-	methyltransferase-like protein
1852	 68.98	0	2071151..2071582	+	143	148260873	-	Acry_1879	-	succinate dehydrogenase, cytochrome b subunit
1853	 67.72	0	2071606..2071983	+	125	148260874	-	Acry_1880	-	succinate dehydrogenase, cytochrome b subunit
1854	 68.93	0	2072009..2073820	+	603	148260875	sdhA	Acry_1881	-	succinate dehydrogenase flavoprotein subunit
1855	 65.52	0	2073837..2074619	+	260	148260876	sdhB	Acry_1882	-	succinate dehydrogenase iron-sulfur subunit
1856	 72.79	0	2075234..2076883	-	549	148260877	-	Acry_1883	-	integral membrane sensor signal transduction histidine kinase
1857	 67.52	0	2076880..2077581	-	233	148260878	-	Acry_1884	-	two component transcriptional regulator
1858	 70.11	0	2078438..2080093	+	551	148260879	-	Acry_1886	-	phosphoenolpyruvate carboxykinase
1859	 73.68	+1	2080608..2081777	+	389	148260880	-	Acry_1887	-	amidohydrolase
1860	 71.45	0	2081774..2082463	+	229	148260881	-	Acry_1888	-	multiple antibiotic resistance (MarC)-related protein
1861	 73.04	0	2082578..2083126	+	182	148260882	-	Acry_1889	-	MarR family transcriptional regulator
1862	 67.75	0	2083126..2084232	+	368	148260883	-	Acry_1890	-	secretion protein HlyD family protein
1863	 66.92	0	2084260..2085834	+	524	148260884	-	Acry_1891	-	EmrB/QacA family drug resistance transporter
1864	 69.00	0	2085877..2086518	-	213	148260885	-	Acry_1892	-	uracil phosphoribosyltransferase
1865	 71.01	0	2086543..2087925	-	460	148260886	-	Acry_1893	-	glycosyl transferase, group 1
1866	 77.54	+1	2087939..2088913	-	324	148260887	-	Acry_1894	-	hypothetical protein
1867	 78.51	+2	2088916..2091777	-	953	148260888	-	Acry_1895	-	glycosyl transferase family protein
1868	 76.18	+1	2091722..2093497	-	591	148260889	-	Acry_1896	-	Sel1 domain-containing protein
1869	 69.74	0	2093516..2094946	-	476	148260890	-	Acry_1897	-	HlyD family type I secretion membrane fusion protein
1870	 68.64	0	2094912..2097140	-	742	148260891	-	Acry_1898	-	ABC transporter related
1871	 69.64	0	2097397..2097900	+	167	148260892	-	Acry_1899	-	GCN5-related N-acetyltransferase
1872	 66.20	0	2097907..2098767	-	286	148260893	-	Acry_1900	-	flagellar motor protein MotA
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.