IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1720	 74.76	+1	1925167..1926537	-	456	148260741	-	Acry_1745	-	N-formimino-L-glutamate deiminase
1721	 73.88	+1	1926620..1927825	+	401	148260742	-	Acry_1746	-	imidazolonepropionase
1722	 73.48	+1	1927822..1929348	+	508	148260743	-	Acry_1747	-	histidine ammonia-lyase
1723	 68.82	0	1929345..1930178	+	277	148260744	-	Acry_1748	-	N-formylglutamate amidohydrolase
1724	 70.14	0	1930184..1931854	+	556	148260745	-	Acry_1749	-	urocanate hydratase
1725	 73.99	+1	1931858..1932622	-	254	148260746	-	Acry_1750	-	GntR family transcriptional regulator
1726	 75.50	+1	1932625..1933518	-	297	148260747	-	Acry_1751	-	N-formylglutamate amidohydrolase
1727	 65.80	0	1933600..1933944	+	114	148260748	-	Acry_1752	-	hypothetical protein
1728	 73.97	+1	1933945..1934355	-	136	148260749	-	Acry_1753	-	hypothetical protein
1729	 72.08	0	1934517..1937951	-	1144	148260750	-	Acry_1754	-	transcription-repair coupling factor
1730	 72.97	0	1938191..1940362	+	723	148260751	-	Acry_1756	-	DEAD/DEAH box helicase domain-containing protein
1731	 73.33	+1	1940359..1940793	+	144	148260752	-	Acry_1757	-	NUDIX hydrolase
1732	 64.42	0	1940786..1941763	-	325	148260753	-	Acry_1758	-	putative sulfite oxidase subunit YedY
1733	 71.90	0	1941863..1942645	+	260	148260754	mazG	Acry_1759	-	nucleoside triphosphate pyrophosphohydrolase
1734	 72.54	0	1942680..1943513	-	277	148260755	-	Acry_1760	-	inositol monophosphatase
1735	 71.87	0	1943537..1944844	-	435	148260756	-	Acry_1761	-	GTP-binding protein, HSR1-related
1736	 65.91	0	1944851..1945378	-	175	148260757	-	Acry_1762	-	RNA chaperone Hfq
1737	 69.31	0	1945426..1946976	-	516	148260758	-	Acry_1763	-	hypothetical protein
1738	 72.83	0	1947117..1948154	-	345	148260759	-	Acry_1764	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1739	 67.87	0	1948159..1948491	-	110	148260760	-	Acry_1765	-	ferredoxin
1740	 75.85	+1	1948546..1949688	-	380	148260761	-	Acry_1766	-	aminotransferase, class V
1741	 70.31	0	1949675..1950442	-	255	148260762	-	Acry_1767	-	serine O-acetyltransferase
1742	 66.37	0	1950885..1951550	+	221	148260763	-	Acry_1768	-	alpha/beta fold family hydrolase-like protein
1743	 65.66	0	1951607..1952404	-	265	148260764	-	Acry_1769	-	DeoR family transcriptional regulator
1744	 60.22	-1	1952645..1953094	-	149	148260765	-	Acry_1770	-	MucR family transcriptional regulator
1745	 64.02	0	1953254..1953517	+	87	148260766	-	Acry_1771	-	SirA family protein
1746	 74.05	+1	1953486..1953932	-	148	148260767	-	Acry_1772	-	ribosomal-protein-alanine acetyltransferase
1747	 78.27	+2	1953929..1954600	-	223	148260768	-	Acry_1773	-	peptidase M22, glycoprotease
1748	 65.64	0	1954602..1955186	-	194	148260769	-	Acry_1774	-	hypothetical protein
1749	 67.74	0	1955229..1955786	-	185	148260770	-	Acry_1775	-	NifU domain-containing protein
1750	 68.44	0	1955991..1956497	+	168	148260771	-	Acry_1776	-	hypothetical protein
1751	 75.99	+1	1956507..1957214	-	235	148260772	-	Acry_1777	-	methyltransferase type 11
1752	 72.68	0	1957248..1957979	+	243	148260773	-	Acry_1778	-	hydroxyacylglutathione hydrolase
1753	 71.68	0	1958065..1959960	-	631	148260774	-	Acry_1779	-	AMP-dependent synthetase and ligase
1754	 72.25	0	1960352..1961014	+	220	148260775	-	Acry_1780	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
1755	 68.66	0	1961064..1962617	+	517	148260776	-	Acry_1781	-	TolC family type I secretion outer membrane protein
1756	 71.51	0	1962614..1963171	+	185	148260777	-	Acry_1782	-	hypothetical protein
1757	 69.84	0	1963330..1966005	+	891	148260778	valS	Acry_1783	-	valyl-tRNA synthetase
1758	 66.43	0	1966078..1966908	+	276	148260779	-	Acry_1784	-	band 7 protein
1759	 73.66	+1	1967004..1968332	-	442	148260780	-	Acry_1785	-	peptidase U62, modulator of DNA gyrase
1760	 67.61	0	1968329..1969594	-	421	148260781	-	Acry_1786	-	processing peptidase
1761	 70.58	0	1969591..1970994	-	467	148260782	-	Acry_1787	-	threonine synthase
1762	 67.27	0	1971057..1971557	-	166	148260783	-	Acry_1788	-	preprotein translocase subunit SecB
1763	 71.82	0	1971641..1972591	+	316	148260784	-	Acry_1789	-	N-acetyl-gamma-glutamyl-phosphate reductase
1764	 69.40	0	1972647..1973195	+	182	148260785	-	Acry_1790	-	2'-5' RNA ligase
1765	 68.70	0	1973308..1974834	-	508	148260786	-	Acry_1791	-	methylmalonate-semialdehyde dehydrogenase
1766	 70.16	0	1974920..1975807	+	295	148260787	-	Acry_1792	-	LysR family transcriptional regulator
1767	 67.68	0	1975868..1976359	-	163	148260788	-	Acry_1793	-	hypothetical protein
1768	 71.32	0	1976383..1977435	+	350	148260789	-	Acry_1794	-	secretion protein HlyD family protein
1769	 72.60	0	1977422..1979158	+	578	148260790	-	Acry_1795	-	ABC transporter related
1770	 69.69	0	1979155..1980279	+	374	148260791	-	Acry_1796	-	ABC-2 type transporter
1771	 68.20	0	1980285..1981391	+	368	148260792	-	Acry_1797	-	ABC-2 type transporter
1772	 68.94	0	1981545..1983218	+	557	148260793	-	Acry_1798	-	hydroxylamine reductase
1773	 69.73	0	1983295..1984305	+	336	148260794	-	Acry_1799	-	oxidoreductase FAD-binding subunit
1774	 67.11	0	1984337..1984789	+	150	148260795	-	Acry_1800	-	BadM/Rrf2 family transcriptional regulator
1775	 68.61	0	1984945..1986075	-	376	148260796	-	Acry_1801	-	cellulose biosynthesis protein CelD
1776	 66.57	0	1986113..1987153	+	346	148260797	-	Acry_1802	-	hypothetical protein
1777	 71.22	0	1987153..1988382	+	409	148260798	-	Acry_1803	-	glycosyl transferase, group 1
1778	 72.05	0	1988400..1989440	+	346	148260799	-	Acry_1804	-	hypothetical protein
1779	 72.74	0	1989437..1990555	+	372	148260800	-	Acry_1805	-	glycosyl transferase, group 1
1780	 68.33	0	1990552..1990971	+	139	148260801	-	Acry_1806	-	hypothetical protein
1781	 61.47	-1	1991304..1992266	-	320	148260802	-	Acry_1808	-	CRISPR-associated Cas1 family protein
1782	 63.46	0	1992259..1992945	-	228	148260803	-	Acry_1809	-	CRISPR-associated Cse3 family protein
1783	 65.20	0	1992942..1993691	-	249	148260804	-	Acry_1810	-	CRISPR-associated Cas5 family protein
1784	 63.43	0	1993693..1994805	-	370	148260805	-	Acry_1811	-	CRISPR-associated Cse4 family protein
1785	 65.56	0	1994805..1995344	-	179	148260806	-	Acry_1812	-	hypothetical protein
1786	 61.01	-1	1995341..1996930	-	529	148260807	-	Acry_1813	-	CRISPR-associated Cse1 family protein
1787	 63.11	-1	1997220..1999325	-	701	148260808	-	Acry_1814	-	CRISPR-associated helicase Cas3
1788	 58.58	-1	2000148..2000456	-	102	148260809	-	Acry_1815	-	hypothetical protein
1789	 62.61	-1	2000602..2002374	-	590	148260810	-	Acry_1816	-	ATPase central domain-containing protein
1790	 60.22	-1	2002595..2003308	-	237	148260811	-	Acry_1817	-	hypothetical protein
1791	 51.75	-2	2003548..2003775	+	75	148260812	-	Acry_1818	-	hypothetical protein
1792	 52.06	-2	2003885..2004370	-	161	148260813	-	Acry_1819	-	hypothetical protein
1793	 49.07	-2	2004619..2004942	-	107	148260814	-	Acry_1820	-	hypothetical protein
1794	 57.49	-2	2005182..2005508	-	108	148260815	-	Acry_1821	-	NIPSNAP family protein
1795	 64.53	0	2005755..2007485	+	576	148260816	-	Acry_1822	-	resolvase domain-containing protein
1796	 66.28	0	2013473..2016055	-	860	148260817	-	Acry_1823	-	ATPase
1797	 69.03	0	2016173..2016934	+	253	148260818	-	Acry_1824	-	MOSC domain-containing protein
1798	 67.35	0	2016985..2017569	+	194	148260819	-	Acry_1825	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1799	 67.78	0	2017577..2018116	+	179	148260820	-	Acry_1826	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1800	 69.65	0	2018170..2018940	+	256	148260821	-	Acry_1827	-	hypothetical protein
1801	 60.71	-1	2018972..2019223	+	83	148260822	-	Acry_1828	-	molybdopterin converting factor, subunit 1
1802	 67.76	0	2019220..2019678	+	152	148260823	-	Acry_1829	-	molybdopterin biosynthesis MoaE protein
1803	 53.78	-2	2019963..2020715	+	250	148260824	-	Acry_1830	-	two component transcriptional regulator
1804	 59.20	-1	2020749..2021900	-	383	148260825	-	Acry_1831	-	radical SAM domain-containing protein
1805	 62.50	-1	2021940..2022923	-	327	148260826	-	Acry_1832	-	hydroxymethylbutenyl pyrophosphate reductase
1806	 67.49	0	2023304..2025247	+	647	148260827	-	Acry_1833	-	1-deoxy-D-xylulose-5-phosphate synthase
1807	 62.04	-1	2025244..2025891	+	215	148260828	-	Acry_1834	-	toluene tolerance family protein
1808	 69.26	0	2025893..2027086	+	397	148260829	-	Acry_1835	-	cell wall biosynthesis glycosyltransferase-like protein
1809	 64.28	0	2027097..2028521	+	474	148260830	-	Acry_1836	-	radical SAM domain-containing protein
1810	 68.03	0	2028543..2029346	+	267	148260831	-	Acry_1837	-	YdjC family protein
1811	 59.15	-1	2029506..2031167	+	553	148260832	-	Acry_1838	-	hypothetical protein
1812	 65.77	0	2031312..2031758	-	148	148260833	-	Acry_1839	-	hypothetical protein
1813	 61.86	-1	2031755..2032087	-	110	148260834	-	Acry_1840	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1814	 68.31	0	2032161..2032889	-	242	148260835	-	Acry_1841	-	hypothetical protein
1815	 65.00	0	2032873..2033292	-	139	148260836	-	Acry_1842	-	hypothetical protein
1816	 64.76	0	2033386..2033805	+	139	148260837	-	Acry_1843	-	BadM/Rrf2 family transcriptional regulator
1817	 70.20	0	2033926..2035650	-	574	148260838	-	Acry_1844	-	DEAD/DEAH box helicase domain-containing protein
1818	 71.99	0	2035778..2036434	-	218	148260839	-	Acry_1845	-	3-oxoacid CoA-transferase, B subunit
1819	 71.18	0	2036434..2037120	-	228	148260840	-	Acry_1846	-	3-oxoacid CoA-transferase, A subunit
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.