IslandPathversion 1.0

IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.17 STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1414	 72.22	0	1594050..1594769	+	239	148260435	-	Acry_1434	-	O-methyltransferase-like protein
1415	 66.67	0	1594778..1595245	-	155	148260436	-	Acry_1435	-	hypothetical protein
1416	 66.60	0	1595471..1596964	+	497	148260437	-	Acry_1436	-	Acetyl-CoA hydrolase
1417	 66.04	0	1597010..1598134	-	374	148260438	-	Acry_1437	-	DNA polymerase III subunit beta
1418	 65.69	0	1598333..1600066	+	577	148260439	-	Acry_1438	-	binding-protein-dependent transport systems inner membrane component
1419	 66.59	0	1600076..1601395	+	439	148260440	-	Acry_1439	-	ABC transporter related
1420	 69.01	0	1601465..1602913	+	482	148260441	-	Acry_1440	-	fumarate lyase
1421	 72.86	0	1602832..1603800	-	322	148260442	-	Acry_1441	-	LysR family transcriptional regulator
1422	 63.62	0	1603866..1604324	+	152	148260443	-	Acry_1442	-	DoxX family protein
1423	 70.11	0	1604324..1605106	+	260	148260444	-	Acry_1443	-	extradiol ring-cleavage dioxygenase III subunit B
1424	 71.66	0	1605082..1606323	-	413	148260445	-	Acry_1444	-	major facilitator transporter
1425	 62.48	-1	1606353..1607882	-	509	148260446	-	Acry_1445	-	Na+/solute symporter
1426	 57.97	-2	1607894..1608100	-	68	148260447	-	Acry_1446	-	hypothetical protein
1427	 64.60	0	1608185..1608766	-	193	148260448	-	Acry_1447	-	guanylate kinase
1428	 68.32	0	1608759..1609667	-	302	148260449	-	Acry_1448	-	hypothetical protein
1429	 64.91	0	1609664..1610746	-	360	148260450	-	Acry_1449	-	DNA methylase N-4/N-6 domain-containing protein
1430	 64.46	0	1610890..1611660	+	256	148260451	-	Acry_1450	-	enoyl-CoA hydratase/isomerase
1431	 66.37	0	1612238..1613257	-	339	148260452	-	Acry_1452	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1432	 69.11	0	1613327..1613776	+	149	148260453	-	Acry_1453	-	hypothetical protein
1433	 70.69	0	1613773..1616652	+	959	148260454	-	Acry_1454	-	hypothetical protein
1434	 68.80	0	1616649..1620122	+	1157	148260455	-	Acry_1455	-	UvrD-like DNA helicase, C terminal
1435	 60.86	-1	1620180..1620506	+	108	148260456	-	Acry_1456	-	thioredoxin
1436	 65.91	0	1620512..1620910	+	132	148260457	-	Acry_1457	-	thioesterase superfamily protein
1437	 64.56	0	1620912..1622336	-	474	148260458	-	Acry_1458	-	major facilitator transporter
1438	 65.05	0	1622344..1623396	-	350	148260459	-	Acry_1459	-	aldo/keto reductase
1439	 63.24	0	1623663..1624334	+	223	148260460	-	Acry_1460	-	MotA/TolQ/ExbB proton channel
1440	 62.15	-1	1624339..1624803	+	154	148260461	-	Acry_1461	-	biopolymer transport protein ExbD/TolR
1441	 65.87	0	1624848..1626221	-	457	148260462	-	Acry_1462	-	D-lactate dehydrogenase (cytochrome)
1442	 67.04	0	1626342..1627154	+	270	148260463	-	Acry_1463	-	metallophosphoesterase
1443	 62.04	-1	1627146..1627685	-	179	148260464	-	Acry_1464	-	cytochrome B561
1444	 67.06	0	1627734..1628738	+	334	148260465	-	Acry_1465	-	hypothetical protein
1445	 66.67	0	1628671..1629342	-	223	148260466	-	Acry_1466	-	FMN-binding negative transcriptional regulator
1446	 66.73	0	1629352..1631010	-	552	148260467	-	Acry_1467	-	3-dehydroquinate synthase
1447	 65.68	0	1631038..1631952	+	304	148260468	-	Acry_1468	-	phage integrase family protein
1448	 63.12	-1	1631979..1632824	-	281	148260469	-	Acry_1469	-	cobyrinic acid a,c-diamide synthase
1449	 62.36	-1	1632814..1633695	-	293	148260470	-	Acry_1470	-	GTP-binding signal recognition particle
1450	 59.06	-1	1633696..1635771	-	691	148260471	flhA	Acry_1471	-	flagellar biosynthesis protein FlhA
1451	 57.96	-2	1635771..1637126	-	451	148260472	-	Acry_1472	-	two component, sigma54 specific, Fis family transcriptional regulator
1452	 58.90	-1	1637133..1637531	-	132	148260473	-	Acry_1473	-	flagellar motor switch protein FliN
1453	 58.85	-1	1637497..1638507	-	336	148260474	fliG	Acry_1474	-	flagellar motor switch protein G
1454	 59.63	-1	1638504..1640066	-	520	148260475	-	Acry_1475	-	flagellar M-ring protein FliF
1455	 64.47	0	1640186..1640641	-	151	148260476	-	Acry_1476	-	CMP/dCMP deaminase, zinc-binding
1456	 66.11	0	1640696..1641409	+	237	148260477	-	Acry_1477	-	peptidase C26
1457	 65.32	0	1641406..1642149	+	247	148260478	-	Acry_1478	-	RNA-binding S4 domain-containing protein
1458	 70.97	0	1642146..1642703	+	185	148260479	-	Acry_1479	-	putative methyltransferase
1459	 62.52	-1	1642710..1643408	-	232	148260480	-	Acry_1480	-	hypothetical protein
1460	 63.72	0	1643411..1644769	-	452	148260481	-	Acry_1481	-	hypothetical protein
1461	 66.23	0	1644786..1646633	-	615	148260482	-	Acry_1482	-	pepF/M3 family oligoendopeptidase
1462	 66.42	0	1646732..1647553	+	273	148260483	-	Acry_1483	-	hypothetical protein
1463	 70.08	0	1647550..1648515	+	321	148260484	-	Acry_1484	-	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
1464	 66.38	0	1648523..1649230	-	235	148260485	-	Acry_1485	-	haloacid dehalogenase, type II
1465	 66.13	0	1649236..1649421	-	61	148260486	-	Acry_1486	-	hypothetical protein
1466	 65.83	0	1649474..1651864	+	796	148260487	-	Acry_1487	-	MscS mechanosensitive ion channel
1467	 62.53	-1	1651917..1652642	+	241	148260488	-	Acry_1488	-	hypothetical protein
1468	 63.59	0	1652650..1653657	-	335	148260489	-	Acry_1489	-	cysteine synthase A
1469	 62.04	-1	1653751..1654161	+	136	148260490	-	Acry_1490	-	rhodanese domain-containing protein
1470	 64.31	0	1654243..1655472	+	409	148260491	-	Acry_1491	-	major facilitator transporter
1471	 61.58	-1	1655516..1656301	+	261	148260492	-	Acry_1492	-	methionine aminopeptidase, type I
1472	 63.15	0	1656346..1657113	+	255	148260493	-	Acry_1493	-	DNA repair protein RadC
1473	 66.28	0	1657108..1657881	-	257	148260494	-	Acry_1494	-	methyltransferase type 11
1474	 65.75	0	1657999..1658652	+	217	148260495	-	Acry_1495	-	phosphoribosyltransferase
1475	 62.02	-1	1658715..1658972	+	85	148260496	-	Acry_1496	-	glutaredoxin 3
1476	 63.60	0	1658969..1659424	+	151	148260497	-	Acry_1497	-	hypothetical protein
1477	 62.25	-1	1659441..1659983	+	180	148260498	-	Acry_1498	-	carbonic anhydrase
1478	 62.93	-1	1660013..1660600	+	195	148260499	-	Acry_1499	-	hypothetical protein
1479	 65.39	0	1660660..1662069	-	469	148260500	-	Acry_1500	-	hypothetical protein
1480	 64.36	0	1662261..1663646	+	461	148260501	-	Acry_1501	-	isocitrate lyase
1481	 67.72	0	1663732..1664775	-	347	148260502	-	Acry_1502	-	HhH-GPD family protein
1482	 69.51	0	1664772..1665263	-	163	148260503	-	Acry_1503	-	hypothetical protein
1483	 64.12	0	1665269..1668016	-	915	148260504	-	Acry_1504	-	DNA polymerase I
1484	 59.65	-1	1668013..1668240	-	75	148260505	-	Acry_1505	-	hypothetical protein
1485	 66.67	0	1668781..1669056	+	91	148260506	-	Acry_1506	-	hypothetical protein
1486	 59.46	-1	1669047..1669601	+	184	148260507	dcd	Acry_1507	-	deoxycytidine triphosphate deaminase
1487	 69.29	0	1669608..1670864	+	418	148260508	-	Acry_1508	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1488	 65.80	0	1670801..1672075	-	424	148260509	-	Acry_1509	-	cyclopropane-fatty-acyl-phospholipid synthase
1489	 68.27	0	1672239..1672799	-	186	148260510	-	Acry_1510	-	ribosomal protein L9
1490	 69.79	0	1672812..1673099	-	95	148260511	rpsR	Acry_1511	-	30S ribosomal protein S18
1491	 66.67	0	1673103..1673579	-	158	148260512	-	Acry_1512	-	ribosomal protein S6
1492	 70.33	0	1673725..1674024	-	99	148260513	-	Acry_1513	-	antibiotic biosynthesis monooxygenase
1493	 71.79	0	1674040..1676028	-	662	148260514	-	Acry_1514	-	carbamoyl-phosphate synthase L chain, ATP-binding
1494	 71.74	0	1676034..1676822	-	262	148260515	-	Acry_1515	-	enoyl-CoA hydratase/isomerase
1495	 68.84	0	1676827..1678434	-	535	148260516	-	Acry_1516	-	propionyl-CoA carboxylase
1496	 71.97	0	1678331..1679254	-	307	148260517	-	Acry_1517	-	glycosyl transferase WecB/TagA/CpsF
1497	 73.10	0	1679251..1680510	-	419	148260518	-	Acry_1518	-	hypothetical protein
1498	 72.56	0	1680590..1681522	+	310	148260519	-	Acry_1519	-	glycosyl transferase family protein
1499	 68.17	0	1681519..1682514	+	331	148260520	-	Acry_1520	-	acyltransferase 3
1500	 69.37	0	1682522..1682743	+	73	148260521	-	Acry_1521	-	hypothetical protein
1501	 69.67	0	1682701..1684065	-	454	148260522	-	Acry_1522	-	hypothetical protein
1502	 72.55	0	1684073..1686229	-	718	148260523	-	Acry_1523	-	non-specific protein-tyrosine kinase
1503	 71.74	0	1686368..1686958	+	196	148260524	-	Acry_1524	-	polysaccharide export protein
1504	 70.42	0	1687107..1688066	+	319	148260525	-	Acry_1525	-	malonyl CoA-acyl carrier protein transacylase
1505	 69.73	0	1688056..1688805	+	249	148260526	-	Acry_1526	-	3-oxoacyl-(acyl-carrier-protein) reductase
1506	 56.67	-2	1688985..1689224	+	79	148260527	-	Acry_1527	-	acyl carrier protein
1507	 67.38	0	1689244..1690512	+	422	148260528	-	Acry_1528	-	3-oxoacyl-(acyl carrier protein) synthase II
1508	 67.07	0	1690530..1691525	+	331	148260529	-	Acry_1529	-	aminodeoxychorismate lyase
1509	 67.60	0	1691636..1693570	+	644	148260530	-	Acry_1530	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
1510	 70.79	0	1693567..1694682	+	371	148260531	-	Acry_1531	-	succinyl-diaminopimelate desuccinylase
1511	 67.82	0	1694679..1695284	+	201	148260532	-	Acry_1532	-	hypothetical protein
1512	 71.22	0	1695259..1696158	-	299	148260533	-	Acry_1533	-	uroporphyrin-III C/tetrapyrrole methyltransferase
1513	 72.87	0	1696221..1697429	+	402	148260534	-	Acry_1534	-	putative lipoprotein-like protein
68.17	MEAN

5.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.