IslandPath Analysis: Acidiphilium cryptum JF-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.17   STD DEV: 5.03
Acidiphilium cryptum JF-5, complete genome - 1..3389227
3063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
94	 64.71	0	104863..105732	-	289	148259115	-	Acry_0094	-	PaaX family transcriptional regulator
95	 61.90	-1	105939..106820	-	293	148259116	-	Acry_0095	-	transposase, IS4 family protein
96	 63.71	0	107093..107329	-	78	148259117	-	Acry_0096	-	hypothetical protein
97	 64.42	0	107462..108439	-	325	148259118	-	Acry_0097	-	transposase, IS4 family protein
98	 63.12	-1	108572..108994	+	140	148259119	-	Acry_0098	-	transposase
99	 58.91	-1	109937..110284	+	115	148259120	-	Acry_0100	-	hypothetical protein
100	 55.04	-2	110302..110688	+	128	148259121	-	Acry_0101	-	transposase, IS4 family protein
101	 59.62	-1	110707..111912	-	401	148259122	-	Acry_0102	-	aminotransferase, class I and II
102	 52.50	-2	111944..114145	-	733	148259123	-	Acry_0103	-	TPR repeat-containing protein
103	 55.18	-2	114138..114929	-	263	148259124	-	Acry_0104	-	TPR repeat-containing protein
104	 46.62	-2	114995..115867	-	290	148259125	-	Acry_0105	-	hypothetical protein
105	 54.17	-2	115953..116216	+	87	148259126	-	Acry_0106	-	hypothetical protein
106	 55.89	-2	116241..116639	-	132	148259127	-	Acry_0107	-	flagellar biosynthesis regulator FlbT-like protein
107	 52.88	-2	116711..117595	-	294	148259128	-	Acry_0108	-	flagellin domain-containing protein
108	 54.39	-2	118749..120206	-	485	148259129	-	Acry_0109	-	flagellar hook-associated protein FlgK
109	 56.49	-2	120249..121526	-	425	148259130	flgE	Acry_0110	-	flagellar hook protein FlgE
110	 63.38	0	121659..122114	-	151	148259131	-	Acry_0111	-	hypothetical protein
111	 64.33	0	122185..123468	+	427	148259132	-	Acry_0112	-	hypothetical protein
112	 61.15	-1	123517..124278	+	253	148259133	-	Acry_0113	-	flagellar hook capping protein
113	 55.79	-2	124372..125823	-	483	148259134	-	Acry_0114	-	hypothetical protein
114	 66.51	0	126107..127360	-	417	148259135	-	Acry_0115	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
115	 65.25	0	127815..129011	+	398	148259136	-	Acry_0116	-	ROK family protein
116	 67.64	0	129367..130599	-	410	148259137	-	Acry_0117	-	amine oxidase
117	 69.07	0	130596..131468	-	290	148259138	-	Acry_0118	-	squalene/phytoene synthase
118	 66.67	0	131468..132304	-	278	148259139	-	Acry_0119	-	squalene/phytoene synthase
119	 68.17	0	132301..133428	-	375	148259140	-	Acry_0120	-	glycosyl transferase family protein
120	 66.21	0	133425..134510	-	361	148259141	-	Acry_0121	-	NAD-dependent epimerase/dehydratase
121	 66.95	0	134658..135707	+	349	148259142	-	Acry_0122	-	hypothetical protein
122	 59.61	-1	135777..136031	+	84	148259143	-	Acry_0123	-	transglycosylase-associated protein
123	 66.58	0	136075..137256	+	393	148259144	-	Acry_0124	-	acyltransferase 3
124	 70.89	0	137216..138400	-	394	148259145	-	Acry_0125	-	HemY domain-containing protein
125	 69.71	0	138400..139353	-	317	148259146	-	Acry_0126	-	hypothetical protein
126	 70.87	0	139350..140063	-	237	148259147	-	Acry_0127	-	uroporphyrinogen III synthase HEM4
127	 68.76	0	140056..141057	-	333	148259148	-	Acry_0128	-	porphobilinogen deaminase
128	 70.79	0	141081..142172	+	363	148259149	-	Acry_0129	-	metalloendopeptidase glycoprotease family
129	 65.36	0	142327..144843	+	838	148259150	-	Acry_0130	-	glycogen/starch/alpha-glucan phosphorylase
130	 63.13	-1	144902..146173	+	423	148259151	glgC	Acry_0131	-	glucose-1-phosphate adenylyltransferase
131	 66.53	0	146176..147615	+	479	148259152	-	Acry_0132	-	glycogen/starch synthase, ADP-glucose type
132	 62.79	-1	147623..150715	-	1030	148259153	-	Acry_0133	-	acriflavin resistance protein
133	 67.54	0	150719..153916	-	1065	148259154	-	Acry_0134	-	acriflavin resistance protein
134	 65.98	0	153913..155073	-	386	148259155	-	Acry_0135	-	RND family efflux transporter MFP subunit
135	 68.92	0	155076..156584	-	502	148259156	-	Acry_0136	-	RND efflux system outer membrane lipoprotein
136	 67.03	0	156613..157167	-	184	148259157	-	Acry_0137	-	phosphoglycerate mutase
137	 71.47	0	157294..157959	+	221	148259158	-	Acry_0138	-	import inner membrane translocase, subunit Tim44
138	 69.16	0	157963..159165	+	400	148259159	-	Acry_0139	-	MltA domain-containing protein
139	 70.45	0	159162..159953	+	263	148259160	-	Acry_0140	-	hypothetical protein
140	 63.50	0	159950..161842	+	630	148259161	-	Acry_0141	-	K+ potassium transporter
141	 73.49	+1	161848..162345	+	165	148259162	-	Acry_0142	-	hypothetical protein
142	 71.88	0	162327..162671	+	114	148259163	-	Acry_0143	-	hypothetical protein
143	 72.33	0	162788..165346	+	852	148259164	-	Acry_0144	-	GCN5-related N-acetyltransferase
144	 68.00	0	165383..166282	+	299	148259165	-	Acry_0145	-	hypothetical protein
145	 66.10	0	166351..167226	-	291	148259166	-	Acry_0146	-	3-hydroxybutyryl-CoA dehydrogenase
146	 68.80	0	167310..168245	-	311	148259167	-	Acry_0147	-	electron transfer flavoprotein, alpha subunit
147	 66.40	0	168248..168997	-	249	148259168	-	Acry_0148	-	electron transfer flavoprotein beta-subunit
148	 72.85	0	169102..172176	-	1024	148259169	-	Acry_0149	-	hypothetical protein
149	 72.92	0	172194..175103	+	969	148259170	-	Acry_0150	-	(glutamate--ammonia-ligase) adenylyltransferase
150	 65.82	0	175100..175573	+	157	148259171	-	Acry_0151	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
151	 67.30	0	175669..176145	+	158	148259172	-	Acry_0152	-	disulphide bond formation protein DsbB
152	 69.22	0	176142..176690	+	182	148259173	-	Acry_0153	-	ubiquinone biosynthesis protein COQ7
153	 72.02	0	176760..177413	+	217	148259174	-	Acry_0154	-	hypothetical protein
154	 61.81	-1	177497..177970	+	157	148259175	-	Acry_0155	-	phasin family protein
155	 65.20	0	177999..180185	+	728	148259176	-	Acry_0156	-	excinuclease ABC subunit B
156	 63.41	0	180182..181009	+	275	148259177	-	Acry_0157	-	hypothetical protein
157	 69.91	0	181110..181787	-	225	148259178	-	Acry_0158	-	hypothetical protein
158	 63.29	0	182359..182802	+	147	148259179	-	Acry_0159	-	hypothetical protein
159	 67.28	0	182795..183283	+	162	148259180	-	Acry_0160	-	hypothetical protein
160	 69.20	0	183407..184510	+	367	148259181	mtnA	Acry_0161	-	methylthioribose-1-phosphate isomerase
161	 68.51	0	184507..185319	+	270	148259182	-	Acry_0162	-	hypothetical protein
162	 70.86	0	185334..186668	+	444	148259183	-	Acry_0163	-	recombination factor protein RarA
163	 71.49	0	186665..187639	+	324	148259184	-	Acry_0164	-	RluA family pseudouridine synthase
164	 68.00	0	187697..189640	+	647	148259185	-	Acry_0165	-	surface antigen (D15)
165	 70.15	0	189640..193599	+	1319	148259186	-	Acry_0166	-	hypothetical protein
166	 65.34	0	193712..194989	-	425	148259187	-	Acry_0167	-	phosphopyruvate hydratase
167	 68.83	0	195047..195508	-	153	148259188	-	Acry_0168	-	endoribonuclease L-PSP
168	 73.15	0	195512..197038	-	508	148259189	-	Acry_0169	-	hypothetical protein
169	 67.69	0	197148..197636	+	162	148259190	-	Acry_0170	-	NADH:ubiquinone oxidoreductase subunit
170	 64.27	0	197674..198174	+	166	148259191	-	Acry_0171	-	hypothetical protein
171	 71.65	0	198171..198752	+	193	148259192	-	Acry_0172	-	hypothetical protein
172	 64.47	0	198903..199997	+	364	148259193	-	Acry_0173	-	OmpA/MotB domain-containing protein
173	 66.11	0	200253..201338	+	361	148259194	-	Acry_0174	-	OmpA/MotB domain-containing protein
174	 71.22	0	201391..202158	-	255	148259195	-	Acry_0175	-	protein tyrosine/serine phosphatase
175	 64.24	0	202166..202660	-	164	148259196	-	Acry_0176	-	hypothetical protein
176	 63.14	0	202767..203078	-	103	148259197	-	Acry_0177	-	ethyl tert-butyl ether degradation EthD
177	 70.25	0	203141..204565	-	474	148259198	-	Acry_0178	-	pyruvate kinase
178	 66.35	0	204710..205024	+	104	148259199	-	Acry_0179	-	hypothetical protein
179	 64.49	0	205082..205357	+	91	148259200	-	Acry_0180	-	hypothetical protein
180	 68.78	0	205407..206402	-	331	148259201	-	Acry_0181	-	delta-aminolevulinic acid dehydratase
181	 70.39	0	206484..207557	-	357	148259202	-	Acry_0182	-	tartrate dehydrogenase
182	 69.92	0	207590..209005	+	471	148259203	-	Acry_0183	-	membrane protein-like protein
183	 74.44	+1	209070..209957	+	295	148259204	-	Acry_0184	-	CHAD domain-containing protein
184	 68.90	0	210057..212342	+	761	148259205	-	Acry_0185	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
185	 70.34	0	212360..213367	-	335	148259206	-	Acry_0186	-	alanine racemase
186	 72.71	0	213562..216075	+	837	148259207	-	Acry_0187	-	phosphoenolpyruvate-protein phosphotransferase
187	 73.48	+1	216072..217025	+	317	148259208	-	Acry_0188	-	1-phosphofructokinase
188	 69.62	0	217022..218716	+	564	148259209	-	Acry_0189	-	PTS system, fructose subfamily, IIC subunit
189	 68.93	0	218787..219227	+	146	148259210	-	Acry_0190	-	thioesterase superfamily protein
190	 71.35	0	219239..220156	+	305	148259211	-	Acry_0191	-	2-dehydropantoate 2-reductase
191	 74.06	+1	220129..220764	-	211	148259212	-	Acry_0192	-	hypothetical protein
192	 71.91	0	220749..222866	-	705	148259213	-	Acry_0193	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
193	 70.57	0	222874..224613	-	579	148259214	-	Acry_0194	-	radical SAM domain-containing protein
68.17	MEAN

5.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.